BAC Information

Click to search

BAC

Clone NameB6Ng01-177K22
Chromosome3 (Build37)
Map Location 33,026,078 - 33,168,452
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177K22.bB6Ng01-177K22.g
ACCGA004882GA004883
length1,1621,046
definitionB6Ng01-177K22.b B6Ng01-177K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,167,283 - 33,168,452)(33,026,078 - 33,027,132)
sequence
gaattcttaaacttgaccctctgtatcttcttcacattcccacagatctt
attttcctgattattatacatttctttgtaaatcttcatctttcaacctc
ctattacaaatatcagttgcatggctaatttccaagcatcttcttgagcc
tccattttcttttatcacagtggaggagtcctagcttaaggcaactgatg
agttcagtattatgtcaacagtatgttttggagactcagttcattcatgc
atttttatgtctaagttttctagaattatcttgccagttgttgacataag
gttaatttataaattaaatatttatcaataaaattgtgtgaaatttatag
ctggatattaagaaatctaagatgtaatcagaattttaaatttctaccaa
aaatgtggtacatattattgtttgtttagattattataattgaagtgtac
ttttataacatgtctatatgctgttttactttgttttttcctcaaatcta
agactatttctttgaattagtagttgattctccacataccatttgatcac
acacatatttgtatttatttctactatattattttggtcagaatcttctc
tatttttctttcctatatttcctatatttggcccaaaaatttcaaaattt
catttatttttctcttaagtaattggtccccatttatgttctctgtcata
attccttaagttaatgtttataaatagtaaatcatttgttaactgttgaa
taatcctttatctggcaagtatatttgtgcggctctacattttaaaattt
tcacactactatctccagacacctataattatgctgaagaagtctgatgt
aagtcttcgtgattttacttggaagttcaattgatgtaacaaattaatca
cttttaattagtggcttaagcaaaaagcagcccgatcttttgcgttttac
aaagaacctcatagccagcatatatgacagaattctttcctgtaatctcg
atgctagtgctttgtttcgtatttgggaatcatgtttataccgggaataa
aacacttcaccatttctttctttcagcaattgcctggtcagatttcttca
tgtaagaccttgtttaacaatttttaataaatttgttatcaggctctcag
tcgaacttcaag
gaattcaaactgagatagctgagaactgaagtctcaggttttcttcacag
aaatcttgtgcccgcccattagaagtggccactttcaacagtccaggccc
tttctgtattccttcatgaaagggtgattaagagcctaagaaatgaagag
aacgcctttgaatagtagtggctatttttgaccatgaagtcaggcattta
ggacaagttcgacagaggatgaagtgctaaggtgtggggcatttggtaaa
gtcttggcagatctggtgtctcgtgggaactgtgagaaaaggggctggaa
agacgaggcattgagagcagtgtagtctcatccccctcacccctctcagg
ggctcccacccaaccacccataattctatttccaggggatctgacagctt
tttctggacccagagacactgcagttatgtgaacagatgacagacagaca
gacagacaatacatccctacacctagataaaaataaaataaactttaaaa
aataggattggggcctgataagaggggactgcggaacccggcttcccatt
ttgtgaactggctgtgagcagagtggctctgttctgctccgcacctcgct
cagggggtgatgcctcttacagaacccaaagcaatggctgtcaaaccatg
aactgaaacttctatgactaagagcctaaatgaaccttttatatttgtag
gttggttacctcaggtattttactacagcaccaggaagctaacacttact
acatcattataaatattttatataaaattgtaagtgacagtgcatgcatt
agaatgtatttgtgtattagaattcaggatgagggggtatttttggctta
gctgatgcatacaaccccagacttcttccacatatatgtacaaagagcgg
acagaccacagtctcagagctttgataaacatgctttactataatactga
cacccaaggtcttctatggggtgattcctactattgctgattgtcagttg
aagcatctagaacctacctgaagcagctcctgtattacctggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33167283_33168452
seq2: B6Ng01-177K22.b_48_1209 (reverse)

seq1  CTTGAAGGTTTCGAGCTGAGAGCTTGAAATAAACAAAAATTTATAAAATA  50
      |||||||  ||||| |||||||| ||| |     | |||||||| ||| |
seq2  CTTGAAG--TTCGA-CTGAGAGCCTGATA-----ACAAATTTATTAAAAA  42

seq1  TT-TAAAACAA-GTCTAACATGAAGAAATCCTGAACA-GCAATTGCTGAA  97
      || | |||||| |||| |||||||||||| |||| || ||||||||||||
seq2  TTGTTAAACAAGGTCTTACATGAAGAAAT-CTGACCAGGCAATTGCTGAA  91

seq1  AG-AAGAATTGGTGAAGTTGTTTTTAATCCC-GTAT-AACATGGATTCCA  144
      || ||||| |||||||||   ||||| |||| |||| ||||||  | |||
seq2  AGAAAGAAATGGTGAAGT--GTTTTATTCCCGGTATAAACATGATTCCCA  139

seq1  AATACGGAAAACAAAGCACTAGCATCGAGATAACAGGAAAGAATTCTGTC  194
      ||||||  ||||||||||||||||||||||| ||||||||||||||||||
seq2  AATACG--AAACAAAGCACTAGCATCGAGATTACAGGAAAGAATTCTGTC  187

seq1  ATAATATGCTGGCTATGA-GTTCTTTGTTAAAACGCAAAAGATCGGGCTG  243
      || ||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AT-ATATGCTGGCTATGAGGTTCTTTG-TAAAACGCAAAAGATCGGGCTG  235

seq1  CTTTTTGCTTAAGCCACTAATTAAAAGTGATTAATTTGTTACATCAATTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTTAAGCCACTAATTAAAAGTGATTAATTTGTTACATCAATTG  285

seq1  AACTTCCAAGTAAAATCACGAAGACTTACATCAGACTTCTTCAGCATAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAAGTAAAATCACGAAGACTTACATCAGACTTCTTCAGCATAAT  335

seq1  TATAGGTGTCTGGAGATAGTAGTGTGAAAATTTTAAAATGTAGAGCCGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGTCTGGAGATAGTAGTGTGAAAATTTTAAAATGTAGAGCCGCA  385

seq1  CAAATATACTTGCCAGATAAAGGATTATTCAACAGTTAACAAATGATTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATACTTGCCAGATAAAGGATTATTCAACAGTTAACAAATGATTTA  435

seq1  CTATTTATAAACATTAACTTAAGGAATTATGACAGAGAACATAAATGGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATAAACATTAACTTAAGGAATTATGACAGAGAACATAAATGGGG  485

seq1  ACCAATTACTTAAGAGAAAAATAAATGAAATTTTGAAATTTTTGGGCCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTACTTAAGAGAAAAATAAATGAAATTTTGAAATTTTTGGGCCAA  535

seq1  ATATAGGAAATATAGGAAAGAAAAATAGAGAAGATTCTGACCAAAATAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGAAATATAGGAAAGAAAAATAGAGAAGATTCTGACCAAAATAAT  585

seq1  ATAGTAGAAATAAATACAAATATGTGTGTGATCAAATGGTATGTGGAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAAATAAATACAAATATGTGTGTGATCAAATGGTATGTGGAGAA  635

seq1  TCAACTACTAATTCAAAGAAATAGTCTTAGATTTGAGGAAAAAACAAAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACTAATTCAAAGAAATAGTCTTAGATTTGAGGAAAAAACAAAGT  685

seq1  AAAACAGCATATAGACATGTTATAAAAGTACACTTCAATTATAATAATCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCATATAGACATGTTATAAAAGTACACTTCAATTATAATAATCT  735

seq1  AAACAAACAATAATATGTACCACATTTTTGGTAGAAATTTAAAATTCTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAATAATATGTACCACATTTTTGGTAGAAATTTAAAATTCTGA  785

seq1  TTACATCTTAGATTTCTTAATATCCAGCTATAAATTTCACACAATTTTAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTAGATTTCTTAATATCCAGCTATAAATTTCACACAATTTTAT  835

seq1  TGATAAATATTTAATTTATAAATTAACCTTATGTCAACAACTGGCAAGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATATTTAATTTATAAATTAACCTTATGTCAACAACTGGCAAGAT  885

seq1  AATTCTAGAAAACTTAGACATAAAAATGCATGAATGAACTGAGTCTCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGAAAACTTAGACATAAAAATGCATGAATGAACTGAGTCTCCAA  935

seq1  AACATACTGTTGACATAATACTGAACTCATCAGTTGCCTTAAGCTAGGAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTGTTGACATAATACTGAACTCATCAGTTGCCTTAAGCTAGGAC  985

seq1  TCCTCCACTGTGATAAAAGAAAATGGAGGCTCAAGAAGATGCTTGGAAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACTGTGATAAAAGAAAATGGAGGCTCAAGAAGATGCTTGGAAAT  1035

seq1  TAGCCATGCAACTGATATTTGTAATAGGAGGTTGAAAGATGAAGATTTAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGCAACTGATATTTGTAATAGGAGGTTGAAAGATGAAGATTTAC  1085

seq1  AAAGAAATGTATAATAATCAGGAAAATAAGATCTGTGGGAATGTGAAGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGTATAATAATCAGGAAAATAAGATCTGTGGGAATGTGAAGAA  1135

seq1  GATACAGAGGGTCAAGTTTAAGAATTC  1170
      |||||||||||||||||||||||||||
seq2  GATACAGAGGGTCAAGTTTAAGAATTC  1162

seq1: chr3_33026078_33027132
seq2: B6Ng01-177K22.g_65_1110

seq1  GAATTCAAACTGAGATAGCTGAGAACTGAAGTCTCAGGTTTTCTTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGAGATAGCTGAGAACTGAAGTCTCAGGTTTTCTTCACAG  50

seq1  AAATCTTGTGCCCGCCCATTAGAAGTGGCCACTTTCAACAGTCCAGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTGCCCGCCCATTAGAAGTGGCCACTTTCAACAGTCCAGGCCC  100

seq1  TTTCTGTATTCCTTCATGAAAGGGTGATTAAGAGCCTAAGAAATGAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATTCCTTCATGAAAGGGTGATTAAGAGCCTAAGAAATGAAGAG  150

seq1  AACGCCTTTGAATAGTAGTGGCTATTTTTGACCATGAAGTCAGGCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCTTTGAATAGTAGTGGCTATTTTTGACCATGAAGTCAGGCATTTA  200

seq1  GGACAAGTTCGACAGAGGATGAAGTGCTAAGGTGTGGGGCATTTGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTTCGACAGAGGATGAAGTGCTAAGGTGTGGGGCATTTGGTAAA  250

seq1  GTCTTGGCAGATCTGGTGTCTCGTGGGAACTGTGAGAAAAGGGGCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCAGATCTGGTGTCTCGTGGGAACTGTGAGAAAAGGGGCTGGAA  300

seq1  AGACGAGGCATTGAGAGCAGTGTAGTCTCATCCCCCTCACCCCTCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGGCATTGAGAGCAGTGTAGTCTCATCCCCCTCACCCCTCTCAGG  350

seq1  GGCTCCCACCCAACCACCCATAATTCTATTTCCAGGGGATCTGACAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCACCCAACCACCCATAATTCTATTTCCAGGGGATCTGACAGCTT  400

seq1  TTTCTGGACCCAGAGACACTGCAGTTATGTGAACAGATGACAGACAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGACCCAGAGACACTGCAGTTATGTGAACAGATGACAGACAGACA  450

seq1  GACAGACAATACATCCCTACACCTAGATAAAAATAAAATAAACTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAATACATCCCTACACCTAGATAAAAATAAAATAAACTTTAAAA  500

seq1  AATAGGATTGGGGCCTGATAAGAGGGGACTGCGGAACCCGGCTTCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATTGGGGCCTGATAAGAGGGGACTGCGGAACCCGGCTTCCCATT  550

seq1  TTGTGAACTGGCTGTGAGCAGAGTGGCTCTGTTCTGCTCCGCACCTCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTGGCTGTGAGCAGAGTGGCTCTGTTCTGCTCCGCACCTCGCT  600

seq1  CAGGGGGTGATGCCTCTTACAGAACCCAAAGCAATGGCTGTCAAACCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGTGATGCCTCTTACAGAACCCAAAGCAATGGCTGTCAAACCATG  650

seq1  AACTGAAACTTCTATGACTAAGAGCCTAAATGAACCTTTTATATTTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACTTCTATGACTAAGAGCCTAAATGAACCTTTTATATTTGTAG  700

seq1  GTTGGTTACCTCAGGTATTTTACTACAGCACCAGGAAGCTAACACTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTACCTCAGGTATTTTACTACAGCACCAGGAAGCTAACACTTACT  750

seq1  ACATCATTATAAAATATTTTATATAAAAATTGTAAGTGACAGTGCATGCA  800
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  ACATCATTAT-AAATATTTTATAT-AAAATTGTAAGTGACAGTGCATGCA  798

seq1  TTAGAATGTATTTGTGTATTAGAATTCAGGGATGA-GGGGTA-TTTTGGC  848
      |||||||||||||||||||||||||||| |||||| |||||| |||||||
seq2  TTAGAATGTATTTGTGTATTAGAATTCA-GGATGAGGGGGTATTTTTGGC  847

seq1  TTAGCTGATGCATACAACCCCAGAC-TCTTCCACATATGT-AACACAGAG  896
      ||||||||||||||||||||||||| |||||||||||| |  ||| ||||
seq2  TTAGCTGATGCATACAACCCCAGACTTCTTCCACATATATGTACAAAGAG  897

seq1  C-GACAGAACCACAGTCTCAGAGCTTTGATTAAACCATGGCTTTACTATT  945
      | ||||| ||||||||||||||||||||||  || ||| |||||||||| 
seq2  CGGACAG-ACCACAGTCTCAGAGCTTTGAT--AAACAT-GCTTTACTATA  943

seq1  ATACTGGCCACCCAGGTCTTCTATGGGGGTTGATTCCTTACTAAGTGCTG  995
      |||||| |  || |||||||||||||||  ||||||| |||| | |||||
seq2  ATACTGACACCCAAGGTCTTCTATGGGG--TGATTCC-TACT-ATTGCTG  989

seq1  ATTGTCAGTTGACAGCATCTAGAA-CTACCTTGGAAGCAAGCCTCCCTGT  1044
      |||||||||||| ||||||||||| ||||||  ||||| |||   |||||
seq2  ATTGTCAGTTGA-AGCATCTAGAACCTACCT--GAAGC-AGC--TCCTGT  1033

seq1  A-TACCT-GTGAG  1055
      | ||||| |||||
seq2  ATTACCTGGTGAG  1046