BAC Information

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BAC

Clone NameB6Ng01-177L21
Chromosome3 (Build37)
Map Location 47,863,117 - 47,944,606
singlet/doubletdoublet
Overlap geneLOC666202
Upstream geneLOC383849, LOC383850, LOC100039426
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177L21.bB6Ng01-177L21.g
ACCGA004928GA004929
length1,1051,085
definitionB6Ng01-177L21.b B6Ng01-177L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,943,501 - 47,944,606)(47,863,117 - 47,864,191)
sequence
gaattcattttttaaatatctgagtagtactccattgtgtaaatgtacca
cattttctgtatccattcttctgttgagggacatatgggttctttccagc
ttctggctattataaatgaggccgctatgaacatagtagagcatgtgccc
ttattacaagttgaaatatattctgggtatattcccaggagaggtattgc
tggatcttctggtagtactggatccaattttttgaggaacggccaaactg
atttctatagtagttgtaccaacttgcaatcccaccagcaatggaggaat
gttcctctttctccacatccttgccaggatttgctgtcacctgatttttt
gatcttagccattgtgagtagtaatgcatgtttgtatttctaaatagtaa
gagagaaaaactgaaatatcagtatatagtaagtaagagagagacaaata
gcgaaagagtgatggagagaaagagaaaaagaaagagagggacagagaga
gagacagaggtatctcgaatgttcctgggtattcataggggcacacatct
atgtaggatggagaataacagagcatccgtcctgacattcctctgtgttt
tgacgtggtgtctgtcttgttcactgatgaactcactggttctttatctt
gtattaactccactgccccctcttctcctttcccaatagtgatatgatat
aaacactgatgctgccatttcctgcttttttatgacatggattttagaaa
tacagactccagtcatcaggcttgggtagtcaatgctttaccactgtccc
cactccaagccccaaggccttcacattcatatgaaagatgcttcataatt
tgcattgctcgagaaagagaataaacaatgacagtttctgaatgttcctg
acaagtattcttcattcctctgtgtcctctcttagagatttccttaggaa
tgcaaggtaatctttcagatttgaatcgagcaagattgggctcttcagta
ttagtacttcacacagtatacttagtttgttttagtgtgggtccacaata
gtgatataatgtgtatgataatagtaatattctggattaatagtattaac
acatt

gaattctttctcatttgcatgcatttccagattaattttaaactcagctc
tgtagaaagaactactctcaccatgttgttagtcagcacacagggcatct
acttcaaacctttctaaatttagccttcttgctggctccactgtacttac
tttctaccctagatggccctattcttgaatcaggatgctcactcaggatg
ctcacctctgaaggtcatgccatgggactcctggcccctaaggcttccag
ttgagcttcaggagggatgagtctcagtgggaaaccagaagggtcaaaaa
aggcaggttgtaagaattttcttctaactgcagctcaggaaggtcacaaa
ggttggctatgctattggactgacaatgacaaaattccagagcactgtac
aactagctgaactttagactcggctttgtctgttacactccaatcaccta
ggaatatgcataaaaacataaattttcactgcacctgattcaatctttta
taatgaattccaatgtaactgaaacctctccaactagtcatatatatgta
tatatacatacacacatatacatacatatgtgtgtatacacacacacaca
cacacatatatatatatattcaacttgtcttatgtatatcattatatcat
ctttctcttgttgggatgcttatcgccgcaccctttataaatcacgtgta
ctttattagtagtatgtactggagtatagacacatggatatattgaaaac
ctaatatcaactgtcatctatgaatttgtcgatgtaaccaaacaaacaat
gtattaacaaacatcaacatgcacttaccccccccccccacacacaccac
cacacataccacaggatattaaaagccaaaccatttgagaattgtgggat
aattcagtaacaagataaatgcattttttgaattaatcaatattataaga
tttattggacagggataccttttgaatagtaaatggtcatttctatgctc
caggttttacacccaaaatttggaaccttaaccgaagttcccattttata
tcagtgtgttccattatttaccgaacctagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47943501_47944606
seq2: B6Ng01-177L21.b_62_1153 (reverse)

seq1  AATGTGTTTAATAACTTAATTAAT-CAGAATATTACCTATTATCATACAC  49
      |||||| ||||| |||  |||||| |||||||||| ||||||||||||||
seq2  AATGTG-TTAAT-ACT--ATTAATCCAGAATATTA-CTATTATCATACAC  45

seq1  A-TATATCACTATTGTGACCCCACAACTAAAAAACAAACTAAGTTATTAC  98
      | |||||||||||||||  ||||| |||  ||||||||||||||   |||
seq2  ATTATATCACTATTGTGGACCCAC-ACT--AAAACAAACTAAGT--ATAC  90

seq1  TGTGTGAAGTAACCTAATACTG-AGAGCCCAAATTCCTTGCTCGATTCAA  147
      |||||||||||  ||||||||| |||||||||    ||||||||||||||
seq2  TGTGTGAAGTA--CTAATACTGAAGAGCCCAA---TCTTGCTCGATTCAA  135

seq1  ATCTGAAAGATTACCTTGCATTCCTAAGGGAAATCTCTAAGAGAGGACAC  197
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCTGAAAGATTACCTTGCATTCCTAA-GGAAATCTCTAAGAGAGGACAC  184

seq1  AGAGGAATGAAGAATACTTGTCAGGAACATTCAGAAACTGTCATTGTTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGAAGAATACTTGTCAGGAACATTCAGAAACTGTCATTGTTTA  234

seq1  TTCTCTTTCTCGAGCAATGCAAATTTATGAAGCATCTTTCATATGAATGT  297
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTCTTTCTCGAGCAATGCAAA-TTATGAAGCATCTTTCATATGAATGT  283

seq1  GAAGGCCTTGGGGCTTGGAGTGGGGACAGTGGTAAAGCATTGACTACCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTTGGGGCTTGGAGTGGGGACAGTGGTAAAGCATTGACTACCCA  333

seq1  AGCCTGATGACTGGAGTCTGTATTTCTAAAATCCATGTCATAAAAAAGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGACTGGAGTCTGTATTTCTAAAATCCATGTCATAAAAAAGCA  383

seq1  GGAAATGGCAGCATCAGTGTTTATATCATATCACTATTGGGAAAGGAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGCAGCATCAGTGTTTATATCATATCACTATTGGGAAAGGAGAA  433

seq1  GAGGGGGCAGTGGAGTTAATACAAGATAAAGAACCAGTGAGTTCATCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCAGTGGAGTTAATACAAGATAAAGAACCAGTGAGTTCATCAGT  483

seq1  GAACAAGACAGACACCACGTCAAAACACAGAGGAATGTCAGGACGGATGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACAGACACCACGTCAAAACACAGAGGAATGTCAGGACGGATGC  533

seq1  TCTGTTATTCTCCATCCTACATAGATGTGTGCCCCTATGAATACCCAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTCTCCATCCTACATAGATGTGTGCCCCTATGAATACCCAGGA  583

seq1  ACATTCGAGATACCTCTGTCTCTCTCTCTGTCCCTCTCTTTCTTTTTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGAGATACCTCTGTCTCTCTCTCTGTCCCTCTCTTTCTTTTTCTC  633

seq1  TTTCTCTCCATCACTCTTTCGCTATTTGTCTCTCTCTTACTTACTATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCATCACTCTTTCGCTATTTGTCTCTCTCTTACTTACTATATA  683

seq1  CTGATATTTCAGTTTTTCTCTCTTACTATTTAGAAATACAAACATGCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTCAGTTTTTCTCTCTTACTATTTAGAAATACAAACATGCATT  733

seq1  ACTACTCACAATGGCTAAGATCAAAAAATCAGGTGACAGCAAATCCTGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCACAATGGCTAAGATCAAAAAATCAGGTGACAGCAAATCCTGGC  783

seq1  AAGGATGTGGAGAAAGAGGAACATTCCTCCATTGCTGGTGGGATTGCAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTGGAGAAAGAGGAACATTCCTCCATTGCTGGTGGGATTGCAAG  833

seq1  TTGGTACAACTACTATAGAAATCAGTTTGGCCGTTCCTCAAAAAATTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACAACTACTATAGAAATCAGTTTGGCCGTTCCTCAAAAAATTGGA  883

seq1  TCCAGTACTACCAGAAGATCCAGCAATACCTCTCCTGGGAATATACCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACTACCAGAAGATCCAGCAATACCTCTCCTGGGAATATACCCAG  933

seq1  AATATATTTCAACTTGTAATAAGGGCACATGCTCTACTATGTTCATAGCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTCAACTTGTAATAAGGGCACATGCTCTACTATGTTCATAGCG  983

seq1  GCCTCATTTATAATAGCCAGAAGCTGGAAAGAACCCATATGTCCCTCAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTATAATAGCCAGAAGCTGGAAAGAACCCATATGTCCCTCAAC  1033

seq1  AGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACT  1083

seq1  CAGATATTT  1106
      |||||||||
seq2  CAGATATTT  1092


seq1: chr3_47863117_47864191
seq2: B6Ng01-177L21.g_69_1153

seq1  GAATTCTTTCTCATTTGCATGCATTTCCAGATTAATTTTAAACTCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCATTTGCATGCATTTCCAGATTAATTTTAAACTCAGCTC  50

seq1  TGTAGAAAGAACTACTCTCACCATGTTGTTAGTCAGCACACAGGGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAGAACTACTCTCACCATGTTGTTAGTCAGCACACAGGGCATCT  100

seq1  ACTTCAAACCTTTCTAAATTTAGCCTTCTTGCTGGCTCCACTGTACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACCTTTCTAAATTTAGCCTTCTTGCTGGCTCCACTGTACTTAC  150

seq1  TTTCTACCCTAGATGGCCCTATTCTTGAATCAGGATGCTCACTCAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCCTAGATGGCCCTATTCTTGAATCAGGATGCTCACTCAGGATG  200

seq1  CTCACCTCTGAAGGTCATGCCATGGGACTCCTGGCCCCTAAGGCTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTGAAGGTCATGCCATGGGACTCCTGGCCCCTAAGGCTTCCAG  250

seq1  TTGAGCTTCAGGAGGGATGAGTCTCAGTGGGAAACCAGAAGGGTCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTCAGGAGGGATGAGTCTCAGTGGGAAACCAGAAGGGTCAAAAA  300

seq1  AGGCAGGTTGTAAGAATTTTCTTCTAACTGCAGCTCAGGAAGGTCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTTGTAAGAATTTTCTTCTAACTGCAGCTCAGGAAGGTCACAAA  350

seq1  GGTTGGCTATGCTATTGGACTGACAATGACAAAATTCCAGAGCACTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTATGCTATTGGACTGACAATGACAAAATTCCAGAGCACTGTAC  400

seq1  AACTAGCTGAACTTTAGACTCGGCTTTGTCTGTTACACTCCAATCACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTGAACTTTAGACTCGGCTTTGTCTGTTACACTCCAATCACCTA  450

seq1  GGAATATGCATAAAAACATAAATTTTCACTGCACCTGATTCAATCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGCATAAAAACATAAATTTTCACTGCACCTGATTCAATCTTTTA  500

seq1  TAATGAATTCCAATGTAACTGAAACCTCTCCAACTAGTCATATATATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATTCCAATGTAACTGAAACCTCTCCAACTAGTCATATATATGTA  550

seq1  TATATACATACACACATATACATACATATGTGTGTATACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATACACACATATACATACATATGTGTGTATACACACACACACA  600

seq1  CACACATATATATATATATTCAACTTGTCTTATGTATATCATTATATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATATATATTCAACTTGTCTTATGTATATCATTATATCAT  650

seq1  CTTTCTCTTGTTGGGATGCTTATCGCCGCACCCTTTATAAATCACGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTGTTGGGATGCTTATCGCCGCACCCTTTATAAATCACGTGTA  700

seq1  CTTTATTAGTAGTATGTACTGGAGTATAGACACATGGATATATTGAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAGTAGTATGTACTGGAGTATAGACACATGGATATATTGAAAAC  750

seq1  CTAATATCAACTGTCATCTATGAATTTGTCGATGTAACCAAACAAAC-AT  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTAATATCAACTGTCATCTATGAATTTGTCGATGTAACCAAACAAACAAT  800

seq1  GTATTAACAAACATCAACATGCACTTACCCCCCCCCCACACACACA----  845
      ||||||||||||||||||||||||||||||||||||| ||||||||    
seq2  GTATTAACAAACATCAACATGCACTTACCCCCCCCCCCCACACACACCAC  850

seq1  CACACATA-CACAGGATA-TAAAAG-CAAAACAATTGAGAATTGT-GGAT  891
      |||||||| ||||||||| |||||| |||| || ||||||||||| ||||
seq2  CACACATACCACAGGATATTAAAAGCCAAACCATTTGAGAATTGTGGGAT  900

seq1  AA-TCAGTAAC-AGAT-AATGCATTTTTTGAATTAATTCAATATTAATAG  938
      || |||||||| |||| ||||||||||||||||||| |||||||| ||| 
seq2  AATTCAGTAACAAGATAAATGCATTTTTTGAATTAA-TCAATATT-ATAA  948

seq1  AATTTATT-GACAGGGATAACTTTTTGGATAGTAAATGGTCATTTCTATG  987
       ||||||| ||||||||| || ||||| ||||||||||||||||||||||
seq2  GATTTATTGGACAGGGAT-ACCTTTTGAATAGTAAATGGTCATTTCTATG  997

seq1  CTCAAGTATTTTATCACCAAATATTT-GAACTTTAAACGAAGTT-CCATT  1035
      ||| ||  ||||| |||| || |||| |||| |||| ||||||| |||||
seq2  CTCCAG-GTTTTA-CACCCAAAATTTGGAACCTTAACCGAAGTTCCCATT  1045

seq1  TTATATCAGTGTGTT-CATTATTATCAGAAAACTAGAAAAA  1075
      ||||||||||||||| |||||||  | | || |||||||||
seq2  TTATATCAGTGTGTTCCATTATTTACCG-AACCTAGAAAAA  1085


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