BAC Information

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BAC

Clone NameB6Ng01-177M06
Chromosome3 (Build37)
Map Location 95,045,120 - 95,217,124
singlet/doubletdoublet
Overlap geneBnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589
Upstream geneEG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128
Downstream geneLOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177M06.bB6Ng01-177M06.g
ACCGA004946GA004947
length994991
definitionB6Ng01-177M06.b B6Ng01-177M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,045,120 - 95,046,101)(95,216,123 - 95,217,124)
sequence
gaattctgtgcaggaaccagaaagattgtgatgtaagggcttgaggggaa
cctgttggtccctaggcacagacttaaatctctcatcacagtttattaaa
ggtcacaggtctgaatttactgagagtgaaaacacaggttttgacagcag
ttctcaggatcacaggcagctgactactaagaaggggttggcttttcaag
attttgcaagctggctcctgggctcccggcagacaggctggctgtggctg
ctggttaagccttccatccacctcccctcaaagactgctaagacaactaa
actgggaaggatcccagtagttttgattacagagaaggaaaatgagaccc
acatattttacagctaaagcagaattaaaactcagagccttacacttcca
atgccacacagccttctttttggacagccgaaatgcaagccaccccccac
cccgttctggggttcccacccttaaatcccagcttgaaggcagtgtccag
aagtgggcgtcgcactgaaaagtgaggatccggtggagctggccctcagg
atgagatgagacatagctcccccatgcagaccactcatgatctttgccag
atcctaggccctctgcccagctttgtgttaggtgcctttcgagccatgca
gatcccggtccagcctagagggataagggaatggaaagatgaatgggagg
agctagaaaactgagtgcttgcatcacttcccatccttttgctcctaaca
tgctccccactggattctatctcttccttgcaggctttacctcttcctag
tacagaaaggcacgtaagaacctgaggacgacacagacttttccgttgtt
ggggttattctttggtgccccccacctcagtgtcttcttcccatggacat
tttcttttttttaaaatagtttttttctttacatttcatttcaccacctc
cccctttcttcttacttcctttttctttttccttgttttttttt
gaattcctagcctcttgtctgaccactgaggggcctctgagtaatgagca
caagtaactaaatttcttttcttaatccttgtgctatcagcaggagttaa
ttatcagaagccatcagcttttagccctagcaaaggaagagagagttaaa
gagccaaaagtcatcatcagcttttttggcccctgttgatgctgtaccta
gcaccttgatgttttcctcagtctacctggatgctgcgctaaatctcagc
aggtcctgggcccccaacccaggtcttctgcaagagcaacaagggtttaa
gtgaccactgagtcatctccccagctctagttggagtgattatttttatc
aaagtaaaaaatatattattttttatcaaaaataactgagtttgctttag
gaatatggaaaatacaaataaaaaataattcataattctaccactgagat
tgtatagtctctccatgagttttatgatcatctgtaaaaagagactcttt
tctgagtctctttgaaatttgaatgcaattctcagatattctatatatta
ctttgtaatctctctcattttgtatcctagcagaagcttatttttaaaaa
aataaggattgttctcttattaaaagccagagaattagagattggttcca
aatataataaacatcaagataagaagagatataactaaaaccactaactg
taagagcttcaaagtaggagacagtttaaatatgtgaacaaacactaata
aaaagagttatattgccatggtaacatcagataaagcggaaaccaagcaa
actccattacataagggtaaggatgggttcaattagccttccaaaggttt
tgctgtgtacttgtttctcatacctccttttctccatcattttacccact
ctctcaacaatactccactgcttaaattgttgctgtgtgcatccctcttt
aagacctacatccagtcagtctttctaaagttctttaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95045120_95046101
seq2: B6Ng01-177M06.b_44_1037

seq1  GAATTCTGTGCAGGAACCAGAAAGATTGTGATGTAAGGGCTTGAGGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCAGGAACCAGAAAGATTGTGATGTAAGGGCTTGAGGGGAA  50

seq1  CCTGTTGGTCCCTAGGCACAGACTTAAATCTCTCATCACAGTTTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGTCCCTAGGCACAGACTTAAATCTCTCATCACAGTTTATTAAA  100

seq1  GGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAG  150

seq1  TTCTCAGGATCACAGGCAGCTGACTACTAAGAAGGGGTTGGCTTTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGATCACAGGCAGCTGACTACTAAGAAGGGGTTGGCTTTTCAAG  200

seq1  ATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGGCTGTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGGCTGTGGCTG  250

seq1  CTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAA  300

seq1  ACTGGGAAGGATCCCAGTAGTTTTGATTACAGAGAAGGAAAATGAGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGGATCCCAGTAGTTTTGATTACAGAGAAGGAAAATGAGACCC  350

seq1  ACATATTTTACAGCTAAAGCAGAATTAAAACTCAGAGCCTTACACTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTACAGCTAAAGCAGAATTAAAACTCAGAGCCTTACACTTCCA  400

seq1  ATGCCACACAGCCTTCTTTTTGGACAGCCGAAATGCAAGCCACCCCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACACAGCCTTCTTTTTGGACAGCCGAAATGCAAGCCACCCCCCAC  450

seq1  CCCGTTCTGGGGTTCCCACCCTTAAATCCCAGCTTGAAGGCAGTGTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCTGGGGTTCCCACCCTTAAATCCCAGCTTGAAGGCAGTGTCCAG  500

seq1  AAGTGGGCGTCGCACTGAAAAGTGAGGATCCGGTGGAGCTGGCCCTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGCGTCGCACTGAAAAGTGAGGATCCGGTGGAGCTGGCCCTCAGG  550

seq1  ATGAGATGAGACATAGCTCCCCCATGCAGACCACTCATGATCTTTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGAGACATAGCTCCCCCATGCAGACCACTCATGATCTTTGCCAG  600

seq1  ATCCTAGGCCCTCTGCCCAGCTTTGTGTTAGGTGCCTTTCGAGCCATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGCCCTCTGCCCAGCTTTGTGTTAGGTGCCTTTCGAGCCATGCA  650

seq1  GATCCCGGTCCAGCCTAGAGGGATAAGGGAATGGAAAGATGAATGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCGGTCCAGCCTAGAGGGATAAGGGAATGGAAAGATGAATGGGAGG  700

seq1  AGCTAGAAAACTGAGTGCTTGCATCACTTCCCATCC-TTTGCTCCTAACA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCTAGAAAACTGAGTGCTTGCATCACTTCCCATCCTTTTGCTCCTAACA  750

seq1  TGCTCCCCACTGGATTCTATCTCTTCCTTGCAGGCTTTACCTCTTCCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCACTGGATTCTATCTCTTCCTTGCAGGCTTTACCTCTTCCTAG  800

seq1  TACAG-AAGGCACGTAAGAACCTGAGGACGACACAGAC-TTTCCG-TGTT  846
      ||||| |||||||||||||||||||||||||||||||| |||||| ||||
seq2  TACAGAAAGGCACGTAAGAACCTGAGGACGACACAGACTTTTCCGTTGTT  850

seq1  GGGGTTATTCTTTGGTGCCCCCCACCTCAGTGTC-TCTT-CCAT-GACAT  893
      |||||||||||||||||||||||||||||||||| |||| |||| |||||
seq2  GGGGTTATTCTTTGGTGCCCCCCACCTCAGTGTCTTCTTCCCATGGACAT  900

seq1  TTTC-TTTTTTTAATATAGTTTTTTTCTTTTCTTTTCTTTTCTC--TCTC  940
      |||| ||||||||| ||||||||||||||| | |||| |||| |   |||
seq2  TTTCTTTTTTTTAAAATAGTTTTTTTCTTTACATTTCATTTCACCACCTC  950

seq1  TCTCTTTCTTTCTTTCTTTCTTTTTTCTTTTTC----TTTTTTTTT  982
       | ||||| ||||| | ||| ||||||||||||    |||||||||
seq2  CCCCTTTC-TTCTTAC-TTCCTTTTTCTTTTTCCTTGTTTTTTTTT  994

seq1: chr3_95216123_95217124
seq2: B6Ng01-177M06.g_60_1050 (reverse)

seq1  AAATTAAAAGAAACTTTTAAGAAAAGACTGACTGGGGATGGTTAGGGTCT  50
      ||||||||   ||||||  || |||||||||||  |||||  || |||||
seq2  AAATTAAA--GAACTTT--AG-AAAGACTGACT--GGATG--TA-GGTCT  40

seq1  TAAAGAGGGGATGCACACAGCAAACATTTAAGCAGTGGAGTTATGTTGAG  100
      |||||| ||||||||||||||||  ||||||||||||||||  |||||||
seq2  TAAAGA-GGGATGCACACAGCAACAATTTAAGCAGTGGAGTATTGTTGAG  89

seq1  AGAAGTGGGTAAAATGGATGAGAAAAGGA-GTATGAGAAACAAGTACACA  149
      || |||||||||||||   |||||||||| ||||||||||||||||||||
seq2  AG-AGTGGGTAAAATGATGGAGAAAAGGAGGTATGAGAAACAAGTACACA  138

seq1  GCAAAACC-TTGGAAGGCTAATTGAAACCATCCTTACCCTTATGTAATGG  198
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GCAAAACCTTTGGAAGGCTAATTGAACCCATCCTTACCCTTATGTAATGG  188

seq1  AGTTTGCTTGGTTTCCGCTTTATCTGATGTTACCATGGCAATATAACTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTGGTTTCCGCTTTATCTGATGTTACCATGGCAATATAACTCT  238

seq1  TTTTATTAGTGTTTTGTTCACATATTTAAACTGTCTCCTACTTTGAAGCT  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGTG-TTTGTTCACATATTTAAACTGTCTCCTACTTTGAAGCT  287

seq1  CTTACAGTTAGTGGTTTTAGTTATATCTCTTCTTATCTTGATGTTTATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTTAGTGGTTTTAGTTATATCTCTTCTTATCTTGATGTTTATTA  337

seq1  TATTTGGAACCAATCTCTAATTCTCTGGCTTTTAATAAGAGAACAATCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAACCAATCTCTAATTCTCTGGCTTTTAATAAGAGAACAATCCT  387

seq1  TATTTTTTTAAAAATAAGCTTCTGCTAGGATACAAAATGAGAGAGATTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAAAAATAAGCTTCTGCTAGGATACAAAATGAGAGAGATTAC  437

seq1  AAAGTAATATATAGAATATCTGAGAATTGCATTCAAATTTCAAAGAGACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATATATAGAATATCTGAGAATTGCATTCAAATTTCAAAGAGACT  487

seq1  CAGAAAAGAGTCTCTTTTTACAGATGATCATAAAACTCATGGAGAGACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAGTCTCTTTTTACAGATGATCATAAAACTCATGGAGAGACTA  537

seq1  TACAATCTCAGTGGTAGAATTATGAATTATTTTTTATTTGTATTTTCCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTCAGTGGTAGAATTATGAATTATTTTTTATTTGTATTTTCCAT  587

seq1  ATTCCTAAAGCAAACTCAGTTATTTTTGATAAAAAATAATATATTTTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAAGCAAACTCAGTTATTTTTGATAAAAAATAATATATTTTTTA  637

seq1  CTTTGATAAAAATAATCACTCCAACTAGAGCTGGGGAGATGACTCAGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATAAAAATAATCACTCCAACTAGAGCTGGGGAGATGACTCAGTGG  687

seq1  TCACTTAAACCCTTGTTGCTCTTGCAGAAGACCTGGGTTGGGGGCCCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAACCCTTGTTGCTCTTGCAGAAGACCTGGGTTGGGGGCCCAGG  737

seq1  ACCTGCTGAGATTTAGCGCAGCATCCAGGTAGACTGAGGAAAACATCAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGAGATTTAGCGCAGCATCCAGGTAGACTGAGGAAAACATCAAG  787

seq1  GTGCTAGGTACAGCATCAACAGGGGCCAAAAAAGCTGATGATGACTTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGTACAGCATCAACAGGGGCCAAAAAAGCTGATGATGACTTTTG  837

seq1  GCTCTTTAACTCTCTCTTCCTTTGCTAGGGCTAAAAGCTGATGGCTTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTAACTCTCTCTTCCTTTGCTAGGGCTAAAAGCTGATGGCTTCTG  887

seq1  ATAATTAACTCCTGCTGATAGCACAAGGATTAAGAAAAGAAATTTAGTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAACTCCTGCTGATAGCACAAGGATTAAGAAAAGAAATTTAGTTA  937

seq1  CTTGTGCTCATTACTCAGAGGCCCCTCAGTGGTCAGACAAGAGGCTAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTCATTACTCAGAGGCCCCTCAGTGGTCAGACAAGAGGCTAGGA  987

seq1  ATTC  1002
      ||||
seq2  ATTC  991