BAC Information

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BAC

Clone NameB6Ng01-177M10
Chromosome3 (Build37)
Map Location 113,905,517 - 114,016,892
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177M10.bB6Ng01-177M10.g
ACCGA004953GA004954
length1,0261,058
definitionB6Ng01-177M10.b B6Ng01-177M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,905,517 - 113,906,547)(114,015,817 - 114,016,892)
sequence
gaattccaggtcacttcttataagtcaaatgaatgttttaacaagttaac
tggacacaaaagcttcataatcagtctttctatgaatattgaaaatatag
cattaaatcatagtagtatcactgtggatttcaatatatctttctctcca
aaaatcatagtgaaatatgtttatattcaatagaatataagtaaaattaa
ggtcagaattcagagtgttagacattgcctcttgtggcttcaagttcata
tcatagacttgtttcctgattctttacagaattagataccattccaatct
ataccaatatgtttttatgtgtaaacacaacaatgtcacatctatatgac
ttctctgaggttttcaaatgtcatttgattattacaatcttttgtttttt
atatttttttttattttttttatttattttttttcttttccattttttat
taggtatttagctcatttacatttccaacgctataccaaaagtcccccat
acccacccacccccactcccctacccacccactccccatttttggccctg
gtgttcccctgtactggggcatataaagtttgcgtgtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatacatatacaactaga
gtcaagagctccggggtactggttagttcataatgttgttccacctatag
ggttgcagttccctttagctccttgggtactttctctagctcctccattg
ggaaccctgtgatccatccattagctgactgtgagcatccacttctgtgt
ttgctaggccccggcatagtctcacaagagacagctacatctttttgctt
ttttaaatgtgctgaaaataatgtaaccgttgaaattagaagcttatcat
tgaagtactcatggcactgaatgtataagtaacaatcttatcttgatctt
attatacataagaagtttatgctttcttctcatggggatcctttttcatc
aatcccattcagtttcacacacacta

gaattcagagtacacatgttttaattagttctttgtgcatcatgaaacat
attctgaggaaaacattaaattacacagaaagatagtgagcaagttgctg
atatgctgatttgctgatattttttgtgttattcaaaatagaattgattt
gaatttcaaatacattcttaaagaaatggtgttttaattaagataaaaat
gatagagtaaaataatgctacagtatttattattatgaaagtattataaa
atactaaaatgaatgaaatcaaaatatatgagaaatggggttttattcaa
gggatttttgttaaagattttaataaagttttacctatcatcatcagtaa
cataacaaaagcttctatcaatgtcagaaaacaaaagaaaaatataacaa
ggttgtgtgtttcttagtcaggcattaagattaggccgtttaagaatgga
ggtatagccaagtggtggtggcatacgcctttatcccagcacttgggagg
cagaagaaggcaggtttctgagtttgaggccagcctggtctacagagtga
gttccaggacagtcatagctacacagagaaaccctgtctcaaaaaacata
aataaataaataaacaaacaaacaaacaaataaataaatagaaaaaatgg
gaagtataattaattgtggaaaacgggacgctttcttctgtcataaggaa
atcatacaacagtgaatgcttccacaattcttttcagcagtatgatagtt
gttcttatcatttcagtcaactgggaaatggttaacaatataggaaatag
tatgaaagaggacttcattaatggagaaatccatcacatttacaactttg
tctaagaatcagacttccctaaatttaccatcatattttacttactatta
ttaaaatcatttttgtcatgtaaagtgagaaactcatttaaaattaattc
aagttcagaaaatatagaaatgtcatagacgatctgttctagacgctcga
agtagttctgcacagtgagagtgtgactaagaactaacgcttctggacca
ggcaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113905517_113906547
seq2: B6Ng01-177M10.b_46_1070

seq1  GAATTCCAGGTCACTTCTTATAAGTCAAATGAATGTTTTAACAAGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCACTTCTTATAAGTCAAATGAATGTTTTAACAAGTTAAC  50

seq1  TGGACACAAAAGCTTCATAATCAGTCTTTCTATGAATATTGAAAATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACAAAAGCTTCATAATCAGTCTTTCTATGAATATTGAAAATATAG  100

seq1  CATTAAATCATAGTAGTATCACTGTGGATTTCAATATATCTTTCTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATCATAGTAGTATCACTGTGGATTTCAATATATCTTTCTCTCCA  150

seq1  AAAATCATAGTGAAATATGTTTATATTCAATAGAATATAAGTAAAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATAGTGAAATATGTTTATATTCAATAGAATATAAGTAAAATTAA  200

seq1  GGTCAGAATTCAGAGTGTTAGACATTGCCTCTTGTGGCTTCAAGTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAATTCAGAGTGTTAGACATTGCCTCTTGTGGCTTCAAGTTCATA  250

seq1  TCATAGACTTGTTTCCTGATTCTTTACAGAATTAGATACCATTCCAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACTTGTTTCCTGATTCTTTACAGAATTAGATACCATTCCAATCT  300

seq1  ATACCAATATGTTTTTATGTGTAAACACAACAATGTCACATCTATATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAATATGTTTTTATGTGTAAACACAACAATGTCACATCTATATGAC  350

seq1  TTCTCTGAGGTTTTCAAATGTCATTTGATTATTACAATCTTTTGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGGTTTTCAAATGTCATTTGATTATTACAATCTTTTGTTTTTT  400

seq1  ATATTTTTTTTTATTTTTTTTATTTATTTTTTTTCTTTTCCATTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTTTATTTTTTTTATTTATTTTTTTTCTTTTCCATTTTTTAT  450

seq1  TAGGTATTTAGCTCATTTACATTTCCAACGCTATACCAAAAGTCCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTAGCTCATTTACATTTCCAACGCTATACCAAAAGTCCCCCAT  500

seq1  ACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCATTTTTGGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCATTTTTGGCCCTG  550

seq1  GTGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCT  600

seq1  CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATACAACTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATACAACTAGA  650

seq1  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAG  700

seq1  GGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  750

seq1  GGAACCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGT  800

seq1  TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTTTTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTTTTTGCTT  850

seq1  TTTTAAATGTTGCTGAAAATATTGTAACCTTTGAAATTAG-AGCTTATCA  899
      ||||||||| ||||||||||| ||||||| |||||||||| |||||||||
seq2  TTTTAAATG-TGCTGAAAATAATGTAACCGTTGAAATTAGAAGCTTATCA  899

seq1  TTGAAGTACTCATGG-ACTGAATGTATAAGTTACAAATCTATTCTGATTT  948
      ||||||||||||||| ||||||||||||||| ||||   |||  ||||  
seq2  TTGAAGTACTCATGGCACTGAATGTATAAGTAACAATCTTATCTTGAT--  947

seq1  AATTATTATAATTAAG-AGTTTATGCTTTCTTCTCAAATGTGAATCCATA  997
        ||||||||  |||| ||||||||||||||||||  ||| | |||| | 
seq2  -CTTATTATACATAAGAAGTTTATGCTTTCTTCTC--ATGGGGATCC-TT  993

seq1  TATCATCTATCCTATTTCAGGTTTCACACACACT  1031
      | ||||| |||| | |||| ||||||||||||||
seq2  TTTCATCAATCCCA-TTCA-GTTTCACACACACT  1025


seq1: chr3_114015817_114016892
seq2: B6Ng01-177M10.g_63_1120 (reverse)

seq1  TTCTTTGGCCTGTTCCAGAAGCTGTTAGTTTCTTTAGTGCACACTCTCAC  50
      |||||  ||||| ||||||||| |||||||   ||||| |||||||||| 
seq2  TTCTT--GCCTGGTCCAGAAGC-GTTAGTT--CTTAGT-CACACTCTCA-  43

seq1  CTGTGCAG-ACTACTTTCGGAGGCGTCCTAGAACCAAGATCGTCTATGAC  99
      |||||||| ||||| ||||   |||| |||||||  ||||||||||||||
seq2  CTGTGCAGAACTAC-TTCG--AGCGT-CTAGAAC--AGATCGTCTATGAC  87

seq1  ATTTCTAATATTTCTGAAACTTTGAATATATTTTAAATTGAGTTTCTCAC  149
      |||||||   ||||||||   ||||||  |||||||| ||||||||||||
seq2  ATTTCTATATTTTCTGAA--CTTGAATTAATTTTAAA-TGAGTTTCTCAC  134

seq1  TTTACATGACAAAATGGAATTTTAAATATTAGTTAAGT-AAATATGATGG  198
      ||||||||||||||  ||  ||| |||| ||| ||||| |||||||||||
seq2  TTTACATGACAAAAATGA--TTTTAATAATAG-TAAGTAAAATATGATGG  181

seq1  TAAATTTAGGGAAGTCTGATTCTTAGACAAAGTTGTAAATGTGATGGATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAGGGAAGTCTGATTCTTAGACAAAGTTGTAAATGTGATGGATT  231

seq1  TCTCCCTTAATTGAAGTCCTCTTTCATACTATTTCCTATATTGTTAACCA  298
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTAA-TGAAGTCCTCTTTCATACTATTTCCTATATTGTTAACCA  280

seq1  TTTCCCAGTTGACTGAAATGATAAGAACAACTATCATACTGCTGAAAAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTTGACTGAAATGATAAGAACAACTATCATACTGCTGAAAAGA  330

seq1  ATTGTGGAAGCATTCACTGTTGTATGATTTCCTTATGACAGAAGAAAGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAAGCATTCACTGTTGTATGATTTCCTTATGACAGAAGAAAGCG  380

seq1  TCCCGTTTTCCACAATTAATTATACTTCCCATTTTTTCTATTTATTTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTTTCCACAATTAATTATACTTCCCATTTTTTCTATTTATTTATT  430

seq1  TGTTTGTTTGTTTGTTTATTTATTTATTTATGTTTTTTGAGACAGGGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTATTTATTTATTTATGTTTTTTGAGACAGGGTTT  480

seq1  CTCTGTGTAGCTATGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCTATGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  530

seq1  CTCAAACTCAGAAACCTGCCTTCTTCTGCCTCCCAAGTGCTGGGATAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCAGAAACCTGCCTTCTTCTGCCTCCCAAGTGCTGGGATAAAG  580

seq1  GCGTATGCCACCACCACTTGGCTATACCTCCATTCTTAAACGGCCTAATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATGCCACCACCACTTGGCTATACCTCCATTCTTAAACGGCCTAATC  630

seq1  TTAATGCCTGACTAAGAAACACACAACCTTGTTATATTTTTCTTTTGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCCTGACTAAGAAACACACAACCTTGTTATATTTTTCTTTTGTTT  680

seq1  TCTGACATTGATAGAAGCTTTTGTTATGTTACTGATGATGATAGGTAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTGATAGAAGCTTTTGTTATGTTACTGATGATGATAGGTAAAA  730

seq1  CTTTATTAAAATCTTTAACAAAAATCCCTTGAATAAAACCCCATTTCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAAAATCTTTAACAAAAATCCCTTGAATAAAACCCCATTTCTCA  780

seq1  TATATTTTGATTTCATTCATTTTAGTATTTTATAATACTTTCATAATAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGATTTCATTCATTTTAGTATTTTATAATACTTTCATAATAAT  830

seq1  AAATACTGTAGCATTATTTTACTCTATCATTTTTATCTTAATTAAAACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGTAGCATTATTTTACTCTATCATTTTTATCTTAATTAAAACAC  880

seq1  CATTTCTTTAAGAATGTATTTGAAATTCAAATCAATTCTATTTTGAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTAAGAATGTATTTGAAATTCAAATCAATTCTATTTTGAATAA  930

seq1  CACAAAAAATATCAGCAAATCAGCATATCAGCAACTTGCTCACTATCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAATATCAGCAAATCAGCATATCAGCAACTTGCTCACTATCTTT  980

seq1  CTGTGTAATTTAATGTTTTCCTCAGAATATGTTTCATGATGCACAAAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATTTAATGTTTTCCTCAGAATATGTTTCATGATGCACAAAGAA  1030

seq1  CTAATTAAAACATGTGTACTCTGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  CTAATTAAAACATGTGTACTCTGAATTC  1058


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