BAC Information

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BAC

Clone NameB6Ng01-178B16
Chromosome3 (Build37)13 (Build37)
Map Location 17,159,376 - 17,160,40761,400,226 - 61,400,457
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936
Downstream geneLOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178B16.bB6Ng01-178B16.g
ACCGA005187GA005188
length1,031130
definitionB6Ng01-178B16.b B6Ng01-178B16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,159,376 - 17,160,407)(61,400,226 - 61,400,457)
sequence
gaattcattccaatcatgtgaataagcaggcagccttgagtatatatgtg
ggaaatcctgctttccttttttctacaacagtcatcgtttgtttgttcat
ttacatttcaggtttctttattttttgaccagaagcaactgtcttatcgt
aattcatggtaaccaaatagtgtcttcttacattttctgaaagaaaacta
ataacaatgagggtctcaagttttctcaatcttgtccctgatgtagccat
ctactgaaagtctgactctttgctactctgcctccgcttacactcccacc
tcttgaaagtcactctgagaattatccaatcctgttccagggactcaaag
taaaagtgcccagctaactctctctctctttgctactgttaacagtgtct
attgctctacttccattggtaattgccaagcatgatatggttttcttttt
gcctttacgtggtccctgaacaaaaagcagttggggatgatctgtaagaa
ttgtttctttctaggcagttgctgaccatcttaataaagactcccaaata
cagtatctgttttatttgagtgatccttggggtctttgtctcacaacaca
tcaaaaacaaaattcaaccctaatgtctttgttacacaatgttgaacaat
tggataaagttcattaaagatactacttggagaagaagcatacttttttc
ctactgttacttcacatattagaattcccatgactctattagaaaaaaat
tgtcagtattttttaaacttgtatgttttagcatctaatatttaaataat
ttactagaagtaacttcaaagtcctcactgtattcatagtttcatattcc
tatagtttgtttttggtgggaatgaaggagttggaggataccaaatgatt
ttaagtatgggtattatcctagttttaggttttatgtcttctatttatga
gccttttcatgagaattgtaaacctgtaactgaattcttctcatagccat
gactgaatttgtgaaatcagagatactcaca

ctgatctttccaaggttttttttttttttttatcatgaaaggatgctgaa
ttttgtcaaattcattctcagcatctaatgtaatgatcatgtgtgtgtgt
ttgtgtgtgtgtttgtgtgtgtgtttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17159376_17160407
seq2: B6Ng01-178B16.b_46_1076

seq1  GAATTCATTCCAATCATGTGAATAAGCAGGCAGCCTTGAGTATATATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAATCATGTGAATAAGCAGGCAGCCTTGAGTATATATGTG  50

seq1  GGAAATCCTGCTTTCCTTTTTTCTACAACAGTCATCGTTTGTTTGTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCTGCTTTCCTTTTTTCTACAACAGTCATCGTTTGTTTGTTCAT  100

seq1  TTACATTTCAGGTTTCTTTATTTTTTGACCAGAAGCAACTGTCTTATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCAGGTTTCTTTATTTTTTGACCAGAAGCAACTGTCTTATCGT  150

seq1  AATTCATGGTAACCAAATAGTGTCTTCTTACATTTTCTGAAAGAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGGTAACCAAATAGTGTCTTCTTACATTTTCTGAAAGAAAACTA  200

seq1  ATAACAATGAGGGTCTCAAGTTTTCTCAATCTTGTCCCTGATGTAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATGAGGGTCTCAAGTTTTCTCAATCTTGTCCCTGATGTAGCCAT  250

seq1  CTACTGAAAGTCTGACTCTTTGCTACTCTGCCTCCGCTTACACTCCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAAGTCTGACTCTTTGCTACTCTGCCTCCGCTTACACTCCCACC  300

seq1  TCTTGAAAGTCACTCTGAGAATTATCCAATCCTGTTCCAGGGACTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAGTCACTCTGAGAATTATCCAATCCTGTTCCAGGGACTCAAAG  350

seq1  TAAAAGTGCCCAGCTAACTCTCTCTCTCTTTGCTACTGTTAACAGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGCCCAGCTAACTCTCTCTCTCTTTGCTACTGTTAACAGTGTCT  400

seq1  ATTGCTCTACTTCCATTGGTAATTGCCAAGCATGATATGGTTTTCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTACTTCCATTGGTAATTGCCAAGCATGATATGGTTTTCTTTTT  450

seq1  GCCTTTACGTGGTCCCTGAACAAAAAGCAGTTGGGGATGATCTGTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACGTGGTCCCTGAACAAAAAGCAGTTGGGGATGATCTGTAAGAA  500

seq1  TTGTTTCTTTCTAGGCAGTTGCTGACCATCTTAATAAAGACTCCCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTCTAGGCAGTTGCTGACCATCTTAATAAAGACTCCCAAATA  550

seq1  CAGTATCTGTTTTATTTGAGTGATCCTTGGGGTCTTTGTCTCACAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTGTTTTATTTGAGTGATCCTTGGGGTCTTTGTCTCACAACACA  600

seq1  TCAAAAACAAAATTCAACCCTAATGTCTTTGTTACACAATGTTGAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACAAAATTCAACCCTAATGTCTTTGTTACACAATGTTGAACAAT  650

seq1  TGGATAAAGTTCATTAAAGATACTACTTGGAGAAGAAGCATACTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAGTTCATTAAAGATACTACTTGGAGAAGAAGCATACTTTTTTC  700

seq1  CTACTGTTACTTCACATATTAGAATTCCCATGACTCTATTAGAAAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTACTTCACATATTAGAATTCCCATGACTCTATTAGAAAAAAAT  750

seq1  TGTCAGTATTTTTTAAACTTGTATGTTTTAGCATCTAATATTTAAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTATTTTTTAAACTTGTATGTTTTAGCATCTAATATTTAAATAAT  800

seq1  TTACTAGAAGTAACTTCAAAGTCCTCACTGTATTCATAGTTTCATATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAGTAACTTCAAAGTCCTCACTGTATTCATAGTTTCATATTCC  850

seq1  TATAGTTTGTTTTTGGTGGGAATGAAGGAGTTGGAGGATACCAAATGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTGTTTTTGGTGGGAATGAAGGAGTTGGAGGATACCAAATGATT  900

seq1  TTAAGTATGGGTATTATCCTAGTTTTAGGTTTTATGTCTTCTATTTATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATGGGTATTATCCTAGTTTTAGGTTTTATGTCTTCTATTTATGA  950

seq1  GCCTTTTCATGAAGAATGTAAAACCTGTAACTGAATTCTTCTCATAGCCA  1000
      ||||||||||| |||||   ||||||||||||||||||||||||||||||
seq2  GCCTTTTCATG-AGAATTGTAAACCTGTAACTGAATTCTTCTCATAGCCA  999

seq1  TGACTGAATTTGTGAAATCAGAGATACTCACA  1032
      ||||||||||||||||||||||||||||||||
seq2  TGACTGAATTTGTGAAATCAGAGATACTCACA  1031


seq1: chr13_61400226_61400457
seq2: B6Ng01-178B16.g_155_197 (reverse)

seq1  ACACAAACACCCTCACATTAGTGATAACAATAATTTTTAAGTGTGAGATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATCATTGTAACTTGCCTGAAGTCTTGTAAAGTGAAGACACAGCTGGAGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGCTTCAACTACAAATGATCATAATCTCTAGGATCAGTGAAATATGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCTCCATGGTAGACAGCTAAGGCAAACAATAGCTGTCAACACTGGAAA  200
                               | |||         |||||   | |
seq2  -------------------------ACACA---------AACAC---ACA  13

seq1  CACAAACACACACACAAACACACAAGCACATG  232
      ||||||||||||||||||||||||  ||||||
seq2  CACAAACACACACACAAACACACA--CACATG  43


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