BAC Information

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BAC

Clone NameB6Ng01-178B20
Chromosome3 (Build37)
Map Location 65,611,311 - 65,740,327
singlet/doubletdoublet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178B20.bB6Ng01-178B20.g
ACCGA005195GA005196
length914767
definitionB6Ng01-178B20.b B6Ng01-178B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,611,311 - 65,612,149)(65,739,488 - 65,740,327)
sequence
gaattcaatggaaatagatttacaaagctcaacaggccacaagcacaaga
aagcaaacacaccaaaggacattgtaatccaaattctcaaaaaagaaaca
aaaaacaaaaaaaactttctctttgtttgtttctttctttgtttctttct
ttgtttgtttctttgtttcttccttccttctttccttccttccttccttc
cttccttccttccttccttccttccttccttccttcctctttctctcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
atcaagaggctggacagatggagagaagtaaagagtatgtgccactctta
tagagggcccaagttcagttcccagcaccagtgattggctgctcaccacc
atctgtatctggctccagggcatccaatgtctgtggcctctgcaggcttc
catgtttatgcagacaaccccaaatgcagacacattccgtccttcctttc
tctttctttctctctctctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttcaataattaaaacaatttctttctttc
ataataaattaaataatttctttctttcataattaaaaataaaataattt
ttcttacacagtatggattaattacagttcccttccctctactcctccca
gtttctccccacttcccatccagatgtgatccctttctccctctcattag
taaaaacagcgtctacgagagtataatgcaatatgatatataaacaaaac
taactcttttgtaattagaccatacaaacaaaacaaaggaaaatttgcca
agagagacccaaagtcagagctctactagttcagctccttcatgaatcca
ataacatgcactaa
gaattcaccgtttgccaaaagtcgtgagttccacctatgcaagtattttt
agtgcaatgaagaaagagatttgagagttttaggaaaacatccctgaaga
tcatgataacagaaggtatattatgcatcagcaaaagtgatactttcttt
ttttttaagatttatttattttctgtatatgagtacaccattgctgtctt
cagacacagcaggagagggcatcagatcccattacagatggttgtgagcc
accatgtggttgctgggatttgaactcaggaccttcggaagagcagtcag
tgctcttaaccactgagccatctctccagcccccaaaagtgatactcttt
aatttgcaaaaaacaaattgaaggtgtgtttccaggaaaaaaaaattgga
aattaagaaaacaaaaacaacaacaacccccctaaaacagtttttagtaa
attatccttcctccaaacagaaaaggttctggctcggaactggcaagcaa
ccgatccatgtgagcaccccataaacattcaagggtgaaggaaatgtcct
cagagcataggaaccatttttgcctctgcaagaacccctttgaaatgcca
gtgactgaaatggggtctttctgacaattctctgcaaatcttggaacaag
aaaggccagtgaagctggttctcggacgaaacagaaggacttaagtaatc
actcctggggtctctggttgggactgtacattcaaagcagagccaactga
agtggctgtggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65611311_65612149
seq2: B6Ng01-178B20.b_126_960

seq1  CAAATTCTCAAAAAAGAAACAAAAAACAAAAAAAACTTTCTCTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTCAAAAAAGAAACAAAAAACAAAAAAAACTTTCTCTTTGTTTG  50

seq1  TTTCTTTCTTTGTTTCTTTCTTTGTTTGTTTCTTTGTTTCTTCCTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTGTTTCTTTCTTTGTTTGTTTCTTTGTTTCTTCCTTCCTT  100

seq1  CTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  150
      ||    ||||||||||||||||||||||||||||||||||||||||||||
seq2  CT----TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  146

seq1  TTCCTTCCTTCCTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  196

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTATCAAGAGGCTGGACAGATGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTATCAAGAGGCTGGACAGATGGAGAG  246

seq1  AAGTAAAGAGTATGTGCCACTCTTATAGAGGGCCCAAGTTCAGTTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGAGTATGTGCCACTCTTATAGAGGGCCCAAGTTCAGTTCCCAG  296

seq1  CACCAGTGATTGGCTGCTCACCACCATCTGTATCTGGCTCCAGGGCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGATTGGCTGCTCACCACCATCTGTATCTGGCTCCAGGGCATCC  346

seq1  AATGTCTGTGGCCTCTGCAGGCTTCCATGTTTATGCAGACAACCCCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTGGCCTCTGCAGGCTTCCATGTTTATGCAGACAACCCCAAAT  396

seq1  GCAGACACATTCCGTCCTTCCTTTCTCTTTCTTTCTCTCTCTCTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACATTCCGTCCTTCCTTTCTCTTTCTTTCTCTCTCTCTTTCTTT  446

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCA  496

seq1  ATAATTAAAACAATTTCTTTCTTTCATAATAAATTAAATAATTTCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAACAATTTCTTTCTTTCATAATAAATTAAATAATTTCTTTCT  546

seq1  TTCATAATTAAAAATAAAATAATTTTTCTTACACAGTATGGATTAATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTAAAAATAAAATAATTTTTCTTACACAGTATGGATTAATTAC  596

seq1  AGTTCCCTTCCCTCTACTCCTCCCAGTTTCTCCCCACTTCCCATCCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTTCCCTCTACTCCTCCCAGTTTCTCCCCACTTCCCATCCAGAT  646

seq1  GTGATCCCTTTCTCCCTCTCATTAGTAAAACAGGCGTCTACGAGAGTATA  700
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GTGATCCCTTTCTCCCTCTCATTAGTAAAAACAGCGTCTACGAGAGTATA  696

seq1  ATGCAATATGATATATAAAACAAAAACTAACTC-TTTGGAATTAGACCAA  749
      |||||||||||||||||||   ||||||||||| |||| |||||||||| 
seq2  ATGCAATATGATATATAAA--CAAAACTAACTCTTTTGTAATTAGACCAT  744

seq1  ACAAACAAACAAAAGGAAAATTGCCCAAGAGAGACCCAAAAGTCAGAGCT  799
      |||||||||  |||||||||||  ||||||||||||| ||||||||||||
seq2  ACAAACAAAACAAAGGAAAATTTGCCAAGAGAGACCC-AAAGTCAGAGCT  793

seq1  CTACTAGTTCAGCT-CTTCAGGAATCCAATAACA-GCACTAA  839
      |||||||||||||| ||||| ||||||||||||| |||||||
seq2  CTACTAGTTCAGCTCCTTCATGAATCCAATAACATGCACTAA  835

seq1: chr3_65739488_65740327
seq2: B6Ng01-178B20.g_67_833 (reverse)

seq1  CACACACACACACATACACACACATACACACACACACACACACACACACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACACACAGCCACTTCAGTTGGCT  100
                            ||||||| ||||||||||||||||||||
seq2  ----------------------CACACAC-CACAGCCACTTCAGTTGGCT  27

seq1  CTGCTTTGAATGTACAGTCCCAACCAGAGACCCCAGGAGTGATTACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGAATGTACAGTCCCAACCAGAGACCCCAGGAGTGATTACTTAA  77

seq1  GTCCTTCTGTTTCGTCCGAGAACCAGCTTCACTGGCCTTTCTTGTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGTTTCGTCCGAGAACCAGCTTCACTGGCCTTTCTTGTTCCAA  127

seq1  GATTTGCAGAGAATTGTCAGAAAGACCCCATTTCAGTCACTGGCATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAGAGAATTGTCAGAAAGACCCCATTTCAGTCACTGGCATTTCA  177

seq1  AAGGGGTTCTTGCAGAGGCAAAAATGGTTCCTATGCTCTGAGGACATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTTCTTGCAGAGGCAAAAATGGTTCCTATGCTCTGAGGACATTTC  227

seq1  CTTCACCCTTGAATGTTTATGGGGTGCTCACATGGATCGGTTGCTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCTTGAATGTTTATGGGGTGCTCACATGGATCGGTTGCTTGCCA  277

seq1  GTTCCGAGCCAGAACCTTTTCTGTTTGGAGGAAGGATAATTTACTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGAGCCAGAACCTTTTCTGTTTGGAGGAAGGATAATTTACTAAAAA  327

seq1  CTGTTTTAGGGGGGTTGTTGTTGTTTTTGTTTTCTTAATTTCCAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGGGGGGTTGTTGTTGTTTTTGTTTTCTTAATTTCCAATTTTT  377

seq1  TTTTCCTGGAAACACACCTTCAATTTGTTTTTTGCAAATTAAAGAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGAAACACACCTTCAATTTGTTTTTTGCAAATTAAAGAGTATC  427

seq1  ACTTTTGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTC  477

seq1  TTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  527

seq1  CATCTGTAATGGGATCTGATGCCCTCTCCTGCTGTGTCTGAAGACAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAATGGGATCTGATGCCCTCTCCTGCTGTGTCTGAAGACAGCAA  577

seq1  TGGTGTACTCATATACAGAAAATAAATAAATCTTAAAAAAAAAGAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACTCATATACAGAAAATAAATAAATCTTAAAAAAAAAGAAAGTA  627

seq1  TCACTTTTGCTGATGCATAATATACCTTCTGTTATCATGATCTTCAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTGCTGATGCATAATATACCTTCTGTTATCATGATCTTCAGGGA  677

seq1  TGTTTTCCTAAAACTCTCAAATCTCTTTCTTCATTGCACTAAAAATACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTAAAACTCTCAAATCTCTTTCTTCATTGCACTAAAAATACTT  727

seq1  GCATAGGTGGAACTCACGACTTTTGGCAAACGGTGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGTGGAACTCACGACTTTTGGCAAACGGTGAATTC  767