BAC Information

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BAC

Clone NameB6Ng01-178F15
Chromosome3 (Build37)
Map Location 147,234,041 - 147,421,452
singlet/doubletdoublet
Overlap genenone
Upstream geneDnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F15.bB6Ng01-178F15.g
ACCGA005364GA005365
length1,144137
definitionB6Ng01-178F15.b B6Ng01-178F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,420,321 - 147,421,452)(147,234,041 - 147,234,177)
sequence
gaattcattaatcaataaaaaaataaatctgaagaaaattactgtaaagt
caatgacaaatatcagtgtgaaatggaatataagccaaaagaaaagcttt
actaagacaaagctacaaaatgacaaaaaaaaaaaaaagacaaaaaaaaa
tcccccaaaatcaagtccaataaagttgaaaattttccacaagagctttg
caggactaagcatatatgaagaccactctgaatgaccaagcagaatttca
cacaatctgtttgatttcctcagacatattgttcacatctgcaaaaattt
tcagatcaggatgcccctcacatttgatgtacatcaccacatctgtccta
gactgaactctcatttctctttcatctaagcaatgttcatatttgttcct
accagtaacaaagaggagtatcagcatgaagccatttcaacttaaaattt
ctaccaggaaccatgcacttttcaggcaaagtgaatttaaaccatctacc
tgccaagtgacagagtccttcagcatctacaaagaatctccacacctctc
ctctctacaccttcagcatcagagttgacaaatcaagggtactttgtttt
aggcctgagtattatatttgtattatattcttccctggagttgaggtctt
ataatggattatgcagaaataaggtattggactgtcattatttgtttctt
tagtgtagtgatagataatattgtattctacaattaaagctattttatac
tatgaagtgtatagttccctttagatgggcagggtaacttgtgtctataa
tactggtactattgagtgcaaggagaaggagtatcatgaattcaagacca
acctatctatctatctgtctatcgtctattctctctctctctgtctatca
cctatctacattccttcttatgagcacaaagtcaaatacatagctggtcc
tacttagtctacaaagagaacaggggtagctacatcttgccaaggagttg
taggtgaacaagggtttaattcctgattggctcttttttgatttttaaga
catccagaattggagaactttgacatttcagatgtcataggatgccttta
gaattatttttcttcagggttaacaattggaaggatgttttccc
atttgaatcagtatgccccaaagccaaaggagagggcattattctgtctt
cttttgtctctgtacaaatgttcacatatgcgtgtatgtgtgcgtatatg
tatatgtatatgtataggtataggtataggtataggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147420321_147421452
seq2: B6Ng01-178F15.b_45_1188 (reverse)

seq1  GGGAAAAAAACCCTCCAATTGTTAAACACTGA--GAAAATAA-TCTAAAG  47
      ||||||| | || |||||||||| ||| ||||   ||||||| |||||||
seq2  GGGAAAACATCCTTCCAATTGTT-AACCCTGAAGAAAAATAATTCTAAAG  49

seq1  GCATCCTATGACATCTG-AATGTCAAAG-TCT-CAATTCT-GATGTCTTA  93
      ||||||||||||||||| |||||||||| ||| ||||||| |||||||||
seq2  GCATCCTATGACATCTGAAATGTCAAAGTTCTCCAATTCTGGATGTCTTA  99

seq1  CAAAATC-AAAAAGAGCC-ATCAGGATTTAAA-CCTTG-TCACCTACAAC  139
       |||||| |||||||||| ||||||| ||||| ||||| |||||||||||
seq2  -AAAATCAAAAAAGAGCCAATCAGGAATTAAACCCTTGTTCACCTACAAC  148

seq1  TCCTTGGC-AGATGTAGCTACCCCTGTTCTCTTTGTAGACTAAGTA-GAC  187
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTTGGCAAGATGTAGCTACCCCTGTTCTCTTTGTAGACTAAGTAGGAC  198

seq1  CAGCTATGTATTTGACTTTGTGCTCATAAGAAGGAATGTAGATAGGTGAT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGTATTTGACTTTGTGCTCATAAGAAGGAATGTAGATAGGTGAT  248

seq1  AGACAGAGAGAGAGAG-ATAGACGATAGACAGATAGATAGATAGGTTGGT  286
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGAGAGAGAATAGACGATAGACAGATAGATAGATAGGTTGGT  298

seq1  CTTGAATTCATGATACTCCTTCTCCTTGCACTCAATAGTACCAGTATTAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTCATGATACTCCTTCTCCTTGCACTCAATAGTACCAGTATTAT  348

seq1  AGACACAAGTTACCCTGCCCATCTAAAGGGAACTATACACTTCATAGTAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAGTTACCCTGCCCATCTAAAGGGAACTATACACTTCATAGTAT  398

seq1  AAAATAGCTTTAATTGTAGAATACAATATTATCTATCACTACACTAAAGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTTTAATTGTAGAATACAATATTATCTATCACTACACTAAAGA  448

seq1  AACAAATAATGACAGTCCAATACCTTATTTCTGCATAATCCATTATAAGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAATGACAGTCCAATACCTTATTTCTGCATAATCCATTATAAGA  498

seq1  CCTCAACTCCAGGGAAGAATATAATACAAATATAATACTCAGGCCTAAAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTCCAGGGAAGAATATAATACAAATATAATACTCAGGCCTAAAA  548

seq1  CAAAGTACCCTTGATTTGTCAACTCTGATGCTGAAGGTGTAGAGAGGAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACCCTTGATTTGTCAACTCTGATGCTGAAGGTGTAGAGAGGAGA  598

seq1  GGTGTGGAGATTCTTTGTAGATGCTGAAGGACTCTGTCACTTGGCAGGTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAGATTCTTTGTAGATGCTGAAGGACTCTGTCACTTGGCAGGTA  648

seq1  GATGGTTTAAATTCACTTTGCCTGAAAAGTGCATGGTTCCTGGTAGAAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTAAATTCACTTTGCCTGAAAAGTGCATGGTTCCTGGTAGAAAT  698

seq1  TTTAAGTTGAAATGGCTTCATGCTGATACTCCTCTTTGTTACTGGTAGGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGAAATGGCTTCATGCTGATACTCCTCTTTGTTACTGGTAGGA  748

seq1  ACAAATATGAACATTGCTTAGATGAAAGAGAAATGAGAGTTCAGTCTAGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGAACATTGCTTAGATGAAAGAGAAATGAGAGTTCAGTCTAGG  798

seq1  ACAGATGTGGTGATGTACATCAAATGTGAGGGGCATCCTGATCTGAAAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTGGTGATGTACATCAAATGTGAGGGGCATCCTGATCTGAAAAT  848

seq1  TTTTGCAGATGTGAACAATATGTCTGAGGAAATCAAACAGATTGTGTGAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGATGTGAACAATATGTCTGAGGAAATCAAACAGATTGTGTGAA  898

seq1  ATTCTGCTTGGTCATTCAGAGTGGTCTTCATATATGCTTAGTCCTGCAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTTGGTCATTCAGAGTGGTCTTCATATATGCTTAGTCCTGCAAA  948

seq1  GCTCTTGTGGAAAATTTTCAACTTTATTGGACTTGATTTTGGGGGATTTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTGGAAAATTTTCAACTTTATTGGACTTGATTTTGGGGGATTTT  998

seq1  TTTTTGTCTTTTTTTTTTTTTTGTCATTTTGTAGCTTTGTCTTAGTAAAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTTTTTTTTTTTTTGTCATTTTGTAGCTTTGTCTTAGTAAAG  1048

seq1  CTTTTCTTTTGGCTTATATTCCATTTCACACTGATATTTGTCATTGACTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTGGCTTATATTCCATTTCACACTGATATTTGTCATTGACTT  1098

seq1  TACAGTAATTTTCTTCAGATTTATTTTTTTATTGATTAATGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATTTTCTTCAGATTTATTTTTTTATTGATTAATGAATTC  1144

seq1: chr3_147234041_147234177
seq2: B6Ng01-178F15.g_69_205

seq1  ATTTGAATCAGTATGCCCCAAAGCCAAAGGAGAGGGCATTATTCTGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATCAGTATGCCCCAAAGCCAAAGGAGAGGGCATTATTCTGTCTT  50

seq1  CTTTTGTCTCTGTACAAATGTTCACATATGCGTGTATGTGTGCGTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTCTGTACAAATGTTCACATATGCGTGTATGTGTGCGTATATG  100

seq1  TATATGTATATGTATAGGTATAGGTATAGGTATAGGT  137
      |||||||||||||||||||||||||||||||||||||
seq2  TATATGTATATGTATAGGTATAGGTATAGGTATAGGT  137