BAC Information

Click to search

BAC

Clone NameB6Ng01-178G21
Chromosome3 (Build37)
Map Location 141,188,484 - 141,311,983
singlet/doubletdoublet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178G21.bB6Ng01-178G21.g
ACCGA005421GA005422
length1,1531,084
definitionB6Ng01-178G21.b B6Ng01-178G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,188,484 - 141,189,642)(141,310,894 - 141,311,983)
sequence
gaattcacttccagtgaattactatggagtttagtccatgctctgagttc
ctgttcactggatctcattatgccagcttcacagagaaagtggaatgaat
ttgccccagaagattcagcagctttctggattatctattgataagcagtt
gttctatttatagaaattgaaaataatcattatttatattttgcctctgt
acctaacatctagtgttatttatcctaaattctgctttccattcatccta
tttatttttgctatcaatgtgtgaatgtgattattttcataaaatatcat
cctgtcatcttcttaaaatgatctttcaagactgtattagggatttgcca
atttttgtttctgatttttgggttattagccaattcaataatctactaca
ttcattttatcctggttacatgtaagtgtttgacttgcatctagtttcat
atatagtcactagaccatattgcatttgtatgtgcacctttgtgcttacc
tgtgttcatatgtatgtgtatatttacctctgtctctctgtctgtctctg
tctgcttctccctctctgtctctctctctctctttcaatttctctgtttc
tctgtctctctgtctctgtgtgtgcatgttatatgtgtttgtgtgtgtgt
gttgtgtgtgtgcttacctgagttctggtcctattagaagtcttaggaca
acctcaaatatccttcctaaatatcatccaattttttgaaagctcatctt
actgaccctgaagacacccagtaaggagaagctaggcccagggatctgtt
ttctaacactgggattacaacctccttctaccaccatctcttgcttatgt
aagacagtttctaaggacttaatgcagtaagacaataccaggctaactga
actacctcccaggcctagacaatgttctatttgaatttttttgaatttat
aagggagcaatctctgtgtttgttgctttatactgtaactttcaattatg
tgtgcactcagtcaaggatgtttaaattttcttctattctatgcattaga
tgttagcaacgaggagatctagccctattcgagaatgcttgttacctagc
ataaaaaaaaaaggctaactataaaattaggaacttactttgccttgctt
gac
gaattcagagacctttcttttattgcttagcttaaatacagccaattaag
tctaacctttttctgcttagtcagcagagctagaaatctagggataaaac
ttaattatttcctctccctctcccatcataaccattgcatttcaagccct
gtcatttatgtctttgaagctctatcctcctcccattcctaccaggtttc
agtcaactgctcacaggtgcctttcaattctctagaatggggtaccaccc
tttatactcatatgtgttgttttaattacagctcatcgggttaccaactt
tgtctaaagtccttttcagcttactctttatctgtattattaaacttata
tttttattatatgcaaagtcctttattacatggctgaagttcactctcta
cactctttgtagtattttcttaacccactttgaacaaatatgactttatt
tcttggcaaaagactaattgttgaccctaattcatccattaaaattctga
cctttgctctcctcagcaatatttttttctttttctgaaggaagtatgtt
tcattctctccccctatttaccctcctcagcctttactccactagaagcc
acttatgcattatcagtttatcttagaactcagcctccactagaacagac
tgttttgctgatcaaactattggccattgaaaatgatcagtatttttcaa
agcatagtaactgttcaataaatacccattgaattaattcataaactgga
atgaagccttttcttgtgttttctgtgtcaaaggcaccttgtctgcttac
ccatcctctagatgggaaaaatgctaaatatcctttcaactcataaatct
tgaaactgagaggccacattttttaagttcagactccattttagagaacc
taatctaagtttgaactcagctaaactatcaggcctgtatctagcattag
tttccaagttttcccccacaaaccagagcttagctctagtctctaggcta
atctccaacaaaacagcttctctagggttatacctcaacaagaccagcac
tccagttttctccctcaacaactgcaccccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141188484_141189642
seq2: B6Ng01-178G21.b_41_1193

seq1  GAATTCACTTCCAGTGAATTACTATGGAGTTTAGTCCATGCTCTGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCAGTGAATTACTATGGAGTTTAGTCCATGCTCTGAGTTC  50

seq1  CTGTTCACTGGATCTCATTATGCCAGCTTCACAGAGAAAGTGGAATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACTGGATCTCATTATGCCAGCTTCACAGAGAAAGTGGAATGAAT  100

seq1  TTGCCCCAGAAGATTCAGCAGCTTTCTGGATTATCTATTGATAAGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCAGAAGATTCAGCAGCTTTCTGGATTATCTATTGATAAGCAGTT  150

seq1  GTTCTATTTATAGAAATTGAAAATAATCATTATTTATATTTTGCCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTATAGAAATTGAAAATAATCATTATTTATATTTTGCCTCTGT  200

seq1  ACCTAACATCTAGTGTTATTTATCCTAAATTCTGCTTTCCATTCATCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACATCTAGTGTTATTTATCCTAAATTCTGCTTTCCATTCATCCTA  250

seq1  TTTATTTTTGCTATCAATGTGTGAATGTGATTATTTTCATAAAATATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGCTATCAATGTGTGAATGTGATTATTTTCATAAAATATCAT  300

seq1  CCTGTCATCTTCTTAAAATGATCTTTCAAGACTGTATTAGGGATTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATCTTCTTAAAATGATCTTTCAAGACTGTATTAGGGATTTGCCA  350

seq1  ATTTTTGTTTCTGATTTTTGGGTTATTAGCCAATTCAATAATCTACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTCTGATTTTTGGGTTATTAGCCAATTCAATAATCTACTACA  400

seq1  TTCATTTTATCCTGGTTACATGTAAGTGTTTGACTTGCATCTAGTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATCCTGGTTACATGTAAGTGTTTGACTTGCATCTAGTTTCAT  450

seq1  ATATAGTCACTAGACCATATTGCATTTGTATGTGCACCTTTGTGCTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCACTAGACCATATTGCATTTGTATGTGCACCTTTGTGCTTACC  500

seq1  TGTGTTCATATGTATGTGTATATTTACCTCTGTCTCTCTGTCTGTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCATATGTATGTGTATATTTACCTCTGTCTCTCTGTCTGTCTCTG  550

seq1  TCTGCTTCTCCCTCTCTGTCTCTCTCTCTCTCTTTCAATTTCTCTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTCCCTCTCTGTCTCTCTCTCTCTCTTTCAATTTCTCTGTTTC  600

seq1  TCTGTCTCTCTGTCTCTGTGTGTGCATGTTATATGTGTTTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTGTCTCTGTGTGTGCATGTTATATGTGTTTGTGTGTGTGT  650

seq1  GTTGTGTGTGTGCTTACCTGAGTTCTGGTCCTATTAGAAGTCTTAGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGTGTGCTTACCTGAGTTCTGGTCCTATTAGAAGTCTTAGGACA  700

seq1  ACCTCAAATATCCTTCCTAAATATCATCCAATTTTTTGAAAGCTCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAATATCCTTCCTAAATATCATCCAATTTTTTGAAAGCTCATCTT  750

seq1  ACTGACCCTGAAGACACCCAGTAAGGAGAAGCTAGGCCCAGGGATCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCTGAAGACACCCAGTAAGGAGAAGCTAGGCCCAGGGATCTGTT  800

seq1  TTCTAACACTGGGATTACAACCTCCTTCTACCACCATCTCTTGCTTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACACTGGGATTACAACCTCCTTCTACCACCATCTCTTGCTTATGT  850

seq1  AAGACAGTTTCTAAGGACTTAATGCAGTAAGACAATACCAGGCTAACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTTTCTAAGGACTTAATGCAGTAAGACAATACCAGGCTAACTGA  900

seq1  ACTACCTCCCAGGCCTAGACAATGTTCTATTTGAATTTTTTTGAATTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTACCTCCCAGGCCTAGACAATGTTCTATTTGAATTTTTTTGAA-TTTA  949

seq1  TAAGGGAGCAATCTCTGTGTTTGTTTGCTTTATACTGTAACTTTCAATTT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TAAGGGAGCAATCTCTGTGTTTG-TTGCTTTATACTGTAACTTTCAA-TT  997

seq1  ATGTGTGCACTCAGTCAGGGATG-TTAAATTTTCTCTTATTCTATGCATT  1049
      ||||||||||||||||| ||||| |||||||||||  |||||||||||||
seq2  ATGTGTGCACTCAGTCAAGGATGTTTAAATTTTCTTCTATTCTATGCATT  1047

seq1  AGATGTTAGCAAACGAGGAGATCTAGCCCCTATCGAAGAATGC-TGTTAT  1098
      |||||||||| ||||||||||||||| ||||||   ||||||| ||||| 
seq2  AGATGTTAGC-AACGAGGAGATCTAG-CCCTATTCGAGAATGCTTGTTAC  1095

seq1  CTAGCATTAAAAAAAAAAAAAGCTAACATAAAAATTAAGGAACTTACTTT  1148
      |||||||   |||||||||| |||||| || ||| | |||||||||||||
seq2  CTAGCAT---AAAAAAAAAAGGCTAAC-TATAAAATTAGGAACTTACTTT  1141

seq1  G-CTTGCTTGAC  1159
      | ||||||||||
seq2  GCCTTGCTTGAC  1153

seq1: chr3_141310894_141311983
seq2: B6Ng01-178G21.g_64_1147 (reverse)

seq1  ACATGGGGGTGCAGGTTTGTTGAGGGAGAAACCTGGAGGTGCTGGTCTTG  50
      |||| |||||||||  ||||||||||||||| ||||| ||||||||||||
seq2  ACAT-GGGGTGCAG--TTGTTGAGGGAGAAAACTGGA-GTGCTGGTCTTG  46

seq1  TTGAGGTTATAA-CCTAGAGAAGCTGGTTTTGTTGGAGATTAGCCTAGAG  99
      |||||| ||||| |||||||||||| ||||||||||||||||||||||||
seq2  TTGAGG-TATAACCCTAGAGAAGCT-GTTTTGTTGGAGATTAGCCTAGAG  94

seq1  ACTAGAGCTAAGCTCTGGTTTTGTTGGGGGAAAACTTGGAAACTAATGCT  149
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  ACTAGAGCTAAGCTCTGGTTT--GTGGGGGAAAACTTGGAAACTAATGCT  142

seq1  AGATACAGGCCTGATAGTTTAGCTGAGTTCAAACTTAGATTAGGTTCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGGCCTGATAGTTTAGCTGAGTTCAAACTTAGATTAGGTTCTCT  192

seq1  AAAATGGAGTCTGAACTTAAAAAATGTGGCCTCTCAGTTTCAAGATTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGTCTGAACTTAAAAAATGTGGCCTCTCAGTTTCAAGATTTAT  242

seq1  GAGTTG-AAGGATATTTAGCATTTTTCCCATCTAGAGGATGGGTAAGCAG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAAGGATATTTAGCATTTTTCCCATCTAGAGGATGGGTAAGCAG  292

seq1  ACAAGGTGCCTTTGACACAGAAAACACAAGAAAAGGCTTCATTCCAGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGCCTTTGACACAGAAAACACAAGAAAAGGCTTCATTCCAGTTT  342

seq1  ATGAATTAATTCAATGGGTATTTATTGAACAGTTACTATGCTTTGAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAATTCAATGGGTATTTATTGAACAGTTACTATGCTTTGAAAAA  392

seq1  TACTGATCATTTTCAATGGCCAATAGTTTGATCAGCAAAACAGTCTGTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATCATTTTCAATGGCCAATAGTTTGATCAGCAAAACAGTCTGTTC  442

seq1  TAGTGGAGGCTGAGTTCTAAGATAAACTGATAATGCATAAGTGGCTTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGGCTGAGTTCTAAGATAAACTGATAATGCATAAGTGGCTTCTA  492

seq1  GTGGAGTAAAGGCTGAGGAGGGTAAATAGGGGGAGAGAATGAAACATACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTAAAGGCTGAGGAGGGTAAATAGGGGGAGAGAATGAAACATACT  542

seq1  TCCTTCAGAAAAAGAAAAAAATATTGCTGAGGAGAGCAAAGGTCAGAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGAAAAAGAAAAAAATATTGCTGAGGAGAGCAAAGGTCAGAATT  592

seq1  TTAATGGATGAATTAGGGTCAACAATTAGTCTTTTGCCAAGAAATAAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGATGAATTAGGGTCAACAATTAGTCTTTTGCCAAGAAATAAAGT  642

seq1  CATATTTGTTCAAAGTGGGTTAAGAAAATACTACAAAGAGTGTAGAGAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTTCAAAGTGGGTTAAGAAAATACTACAAAGAGTGTAGAGAGT  692

seq1  GAACTTCAGCCATGTAATAAAGGACTTTGCATATAATAAAAATATAAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAGCCATGTAATAAAGGACTTTGCATATAATAAAAATATAAGTT  742

seq1  TAATAATACAGATAAAGAGTAAGCTGAAAAGGACTTTAGACAAAGTTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATACAGATAAAGAGTAAGCTGAAAAGGACTTTAGACAAAGTTGGT  792

seq1  AACCCGATGAGCTGTAATTAAAACAACACATATGAGTATAAAGGGTGGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGATGAGCTGTAATTAAAACAACACATATGAGTATAAAGGGTGGTA  842

seq1  CCCCATTCTAGAGAATTGAAAGGCACCTGTGAGCAGTTGACTGAAACCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCTAGAGAATTGAAAGGCACCTGTGAGCAGTTGACTGAAACCTG  892

seq1  GTAGGAATGGGAGGAGGATAGAGCTTCAAAGACATAAATGACAGGGCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATGGGAGGAGGATAGAGCTTCAAAGACATAAATGACAGGGCTTG  942

seq1  AAATGCAATGGTTATGATGGGAGAGGGAGAGGAAATAATTAAGTTTTATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAATGGTTATGATGGGAGAGGGAGAGGAAATAATTAAGTTTTATC  992

seq1  CCTAGATTTCTAGCTCTGCTGACTAAGCAGAAAAAGGTTAGACTTAATTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTTCTAGCTCTGCTGACTAAGCAGAAAAAGGTTAGACTTAATTG  1042

seq1  GCTGTATTTAAGCTAAGCAATAAAAGAAAGGTCTCTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTTAAGCTAAGCAATAAAAGAAAGGTCTCTGAATTC  1084