BAC Information

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BAC

Clone NameB6Ng01-178M18
Chromosome3 (Build37)
Map Location 140,143,565 - 140,295,922
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178M18.bB6Ng01-178M18.g
ACCGA005684GA005685
length1,178901
definitionB6Ng01-178M18.b B6Ng01-178M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,143,565 - 140,144,762)(140,295,029 - 140,295,922)
sequence
gaattccatgggtcataaacaaagttcctagaattcaagtgaggttataa
atatttgtaattggagttaacaaattattcagaaattcactagcttaaag
tcacaaaatttattttaacatttattttacaatggcttctctgtgctaaa
agttcagttcaactttaatgggtctccatatacctgtgattgaagtactg
aaaagagtggaattttcaagaaaatgtcaccatggaaagccatgttttca
acttcagaaaagtcattgttggtgcatgtggtggtaagtttcaatgggtg
acttgagatgtagagtcaccagagagagaggtcccttggaacacctgttg
gagattgttgcttaggttacttgaaataggaagactaacccactttcacc
agttccacctcatagactagggtggaggactgcaaactttaaatagtaag
gtggtcacagacatccattgctctctgcttcataatcaatgcaattcaac
catctgcctgaagagcctgttgttgtgactgccctgtacttggaacagtg
agataaaatacaactgtcctctctaggtggctttcccatggtattttatt
aagtgagaaaaggaactcagcaataggaaaagagatggagacactgtctc
actgacatgtgggctgttaggagcagcatggtttggcttttgcctagaga
cggcctaaacttatcttttcatatcagcttcttctgtatcacaacgtttt
tcttgaaggccattaagaggcagtgctgcctgtctaggaaaaattgtgca
gtgacatttttttctgtgttattataattggactgacaatctctgatgca
ttcagttagaagagaatcaatgtatgaagcctgaaagggacacaaaaaca
aagttaaaggcaactcagaatattatagaacctgtttcctatattcatgt
tccaaactctctacttagagatttattaagttatattttaatactccatt
tagtgaaattaaataagatggctcatatttattatttatttatttaatat
tatttgtatttcatgctatttatattacattcaatgctatccccatccca
ggtcctctccacatcttcccctgcccttcaattgaaggtgctccactatc
agcgatcagtcgttctcaatggcctagc

gaattctggttatgtcacctcatatcattgatctgttctactatcttctt
tttgctgacagtttctacaaagcttaaatagagaagcaaaacgtgctaaa
ggaaataaagaacgcgtgatttgttataggtatctcacaagcacaggatc
tcatagaacagcctggtgctctgaatctgatgagaagcatggagctgtgg
taggtcagtctatgtcagtctaagaaggaagcataggtatgggtgagaaa
agagacaagctacaagccacagaaaatactcatattcctcaaactgtgtt
attagtaacttccaggaggcaaaatgtggcactctgtccaggagctgaac
acattcttggccaagaaattagtatctggagtatgtttggagggatgtag
aggaattagtgactagaaatatgtaatggcaatatgctgattacatgaac
caccaaacagacgactatggtgtaagttccctcctctctttaccagattt
caaagattagagtttaaactttatttctgccctccatctgcattgtgaat
gaatctcttctgtggctaacagacccctagaatcacaccaaaaaacctat
aatttcattaaggggacatggtagacgttcacaactatatcatgtattac
ttgtttttacaaatatagatagatatgtcagaacttcattatttctctca
acaataaaccagacacttcaaatgttcaaatgcaaatttatatgagaata
tatatatatatatatatatatatatatatatatatatatatgcacagata
tatttaaatatatgctggtatattagggattgctaatttcgcagccttca
tctgaaacatttctatgacctccagccctgaccggtgtgaaagaaatttt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140143565_140144762
seq2: B6Ng01-178M18.b_48_1225

seq1  GAATTCCATGGGTCATAAACAAAGTTCCTAGAATTCAAGTGAGGTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGGTCATAAACAAAGTTCCTAGAATTCAAGTGAGGTTATAA  50

seq1  ATATTTGTAATTGGAGTTAACAAATTATTCAGAAATTCACTAGCTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAATTGGAGTTAACAAATTATTCAGAAATTCACTAGCTTAAAG  100

seq1  TCACAAAATTTATTTTAACATTTATTTTACAATGGCTTCTCTGTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATTTATTTTAACATTTATTTTACAATGGCTTCTCTGTGCTAAA  150

seq1  AGTTCAGTTCAACTTTAATGGGTCTCCATATACCTGTGATTGAAGTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTCAACTTTAATGGGTCTCCATATACCTGTGATTGAAGTACTG  200

seq1  AAAAGAGTGGAATTTTCAAGAAAATGTCACCATGGAAAGCCATGTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTGGAATTTTCAAGAAAATGTCACCATGGAAAGCCATGTTTTCA  250

seq1  ACTTCAGAAAAGTCATTGTTGGTGCATGTGGTGGTAAGTTTCAATGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAAAAGTCATTGTTGGTGCATGTGGTGGTAAGTTTCAATGGGTG  300

seq1  ACTTGAGATGTAGAGTCACCAGAGAGAGAGGTCCCTTGGAACACCTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATGTAGAGTCACCAGAGAGAGAGGTCCCTTGGAACACCTGTTG  350

seq1  GAGATTGTTGCTTAGGTTACTTGAAATAGGAAGACTAACCCACTTTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTTGCTTAGGTTACTTGAAATAGGAAGACTAACCCACTTTCACC  400

seq1  AGTTCCACCTCATAGACTAGGGTGGAGGACTGCAAACTTTAAATAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCTCATAGACTAGGGTGGAGGACTGCAAACTTTAAATAGTAAG  450

seq1  GTGGTCACAGACATCCATTGCTCTCTGCTTCATAATCAATGCAATTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACAGACATCCATTGCTCTCTGCTTCATAATCAATGCAATTCAAC  500

seq1  CATCTGCCTGAAGAGCCTGTTGTTGTGACTGCCCTGTACTTGGAACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTGAAGAGCCTGTTGTTGTGACTGCCCTGTACTTGGAACAGTG  550

seq1  AGATAAAATACAACTGTCCTCTCTAGGTGGCTTTCCCATGGTATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATACAACTGTCCTCTCTAGGTGGCTTTCCCATGGTATTTTATT  600

seq1  AAGTGAGAAAAGGAACTCAGCAATAGGAAAAGAGATGGAGACACTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAAAAGGAACTCAGCAATAGGAAAAGAGATGGAGACACTGTCTC  650

seq1  ACTGACATGTGGGCTGTTAGGAGCAGCATGGTTTGGCTTTTGCCTAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGTGGGCTGTTAGGAGCAGCATGGTTTGGCTTTTGCCTAGAGA  700

seq1  CGGCCTAAACTTATCTTTTCATATCAGCTTCTTCTGTATCACAACGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTAAACTTATCTTTTCATATCAGCTTCTTCTGTATCACAACGTTTT  750

seq1  TCTTGAAGGCCATTAAGAGGCAGTGCTGCCTGTCTAGGAAAAATTGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGCCATTAAGAGGCAGTGCTGCCTGTCTAGGAAAAATTGTGCA  800

seq1  GTGACATTTTTTTCTGTGTTATTATAATTGGACTGACAATCTCTGATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTTTTTCTGTGTTATTATAATTGGACTGACAATCTCTGATGCA  850

seq1  TTCAGTTAGAAGAGAATCAATGTATGAAGCCTGAAAGGGACACAAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAGAAGAGAATCAATGTATGAAGCCTGAAAGGGACACAAAAACA  900

seq1  AAGTT-AAGGCAACTCAGAATATTATAGAACCTGTTTCCTATATTCATGT  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAGGCAACTCAGAATATTATAGAACCTGTTTCCTATATTCATGT  950

seq1  TCCAAACTCTCTACTTAGAGATTTATTAAG-TATATTTTTATACTCCATT  998
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TCCAAACTCTCTACTTAGAGATTTATTAAGTTATATTTTAATACTCCATT  1000

seq1  TAGTGAAATTAAATAAGAATGGCTCATATTTATTTATTTATTTATTTATT  1048
      ||||||||||||||||| |||||||||||||| ||||||||||||||| |
seq2  TAGTGAAATTAAATAAG-ATGGCTCATATTTA-TTATTTATTTATTTAAT  1048

seq1  ATTTATTTTGTTTATTTTCTATTGCTTATTTTATTTAT-TTACATTTCAA  1097
      |||            ||| ||||  | ||  ||||||| |||||||   |
seq2  ATT-----------ATTTGTATT--TCATGCTATTTATATTACATT--CA  1083

seq1  ATGCTATCCCCCTTCCCAGGTTCCCCTCCACAATTCCCTCCCCCTGCC--  1145
      ||||||| |||| ||||||| ||| |||||||     || ||||||||  
seq2  ATGCTAT-CCCCATCCCAGG-TCCTCTCCACA----TCTTCCCCTGCCCT  1127

seq1  TCTA-TGAGGGTGCTCCACTATCCACCCACCCACTCCTTCCTCAATGGCC  1194
      || | ||| ||||||||||||| || | |  || || || ||||||||||
seq2  TCAATTGAAGGTGCTCCACTAT-CAGCGA-TCAGTCGTT-CTCAATGGCC  1174

seq1  TAGC  1198
      ||||
seq2  TAGC  1178


seq1: chr3_140295029_140295922
seq2: B6Ng01-178M18.g_66_966 (reverse)

seq1  TAAAA-ATCTTTCACA-CAGTCCTGGCT-GAGGTCATAAAAATG-TTCAG  46
      |||||  ||||||||| | |||  |||| ||||||||| ||||| |||||
seq2  TAAAATTTCTTTCACACCGGTCAGGGCTGGAGGTCATAGAAATGTTTCAG  50

seq1  A-GAAGGCTGCGAAGTGTGCAATCCCTA--TTTCCAGCCTTTCTTTCAAT  93
      | |||||||||||| |  ||||||||||   | ||||| | | ||| |||
seq2  ATGAAGGCTGCGAAATTAGCAATCCCTAATATACCAGCATATATTTAAAT  100

seq1  ACTACAGTGCATATATATATATATATATATATATATATATATATATATAT  143
      |   | ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTGCATATATATATATATATATATATATATATATATATATATAT  150

seq1  ATATTCTCATATAAATTTGCATTTGAACATTTGAAGTGTCTGGTTTATTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCATATAAATTTGCATTTGAACATTTGAAGTGTCTGGTTTATTG  200

seq1  TTGAGAGAAATAATGAAGTTCTGACATATCTATCTATATTTGTAAAAACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAAATAATGAAGTTCTGACATATCTATCTATATTTGTAAAAACA  250

seq1  AGTAATACATGATATAGTTGTGAACGTCTACCATGTCCCCTTAATGAAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACATGATATAGTTGTGAACGTCTACCATGTCCCCTTAATGAAAT  300

seq1  TATAGGTTTTTTGGTGTGATTCTAGGGGTCTGTTAGCCACAGAAGAGATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTTTTTGGTGTGATTCTAGGGGTCTGTTAGCCACAGAAGAGATT  350

seq1  CATTCACAATGCAGATGGAGGGCAGAAATAAAGTTTAAACTCTAATCTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAATGCAGATGGAGGGCAGAAATAAAGTTTAAACTCTAATCTTT  400

seq1  GAAATCTGGTAAAGAGAGGAGGGAACTTACACCATAGTCGTCTGTTTGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGGTAAAGAGAGGAGGGAACTTACACCATAGTCGTCTGTTTGGT  450

seq1  GGTTCATGTAATCAGCATATTGCCATTACATATTTCTAGTCACTAATTCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTAATCAGCATATTGCCATTACATATTTCTAGTCACTAATTCC  500

seq1  TCTACATCCCTCCAAACATACTCCAGATACTAATTTCTTGGCCAAGAATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCCCTCCAAACATACTCCAGATACTAATTTCTTGGCCAAGAATG  550

seq1  TGTTCAGCTCCTGGACAGAGTGCCACATTTTGCCTCCTGGAAGTTACTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTCCTGGACAGAGTGCCACATTTTGCCTCCTGGAAGTTACTAA  600

seq1  TAACACAGTTTGAGGAATATGAGTATTTTCTGTGGCTTGTAGCTTGTCTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAGTTTGAGGAATATGAGTATTTTCTGTGGCTTGTAGCTTGTCTC  650

seq1  TTTTCTCACCCATACCTATGCTTCCTTCTTAGACTGACATAGACTGACCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACCCATACCTATGCTTCCTTCTTAGACTGACATAGACTGACCT  700

seq1  ACCACAGCTCCATGCTTCTCATCAGATTCAGAGCACCAGGCTGTTCTATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCTCCATGCTTCTCATCAGATTCAGAGCACCAGGCTGTTCTATG  750

seq1  AGATCCTGTGCTTGTGAGATACCTATAACAAATCACGCGTTCTTTATTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGTGCTTGTGAGATACCTATAACAAATCACGCGTTCTTTATTTC  800

seq1  CTTTAGCACGTTTTGCTTCTCTATTTAAGCTTTGTAGAAACTGTCAGCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCACGTTTTGCTTCTCTATTTAAGCTTTGTAGAAACTGTCAGCAA  850

seq1  AAAGAAGATAGTAGAACAGATCAATGATATGAGGTGACATAACCAGAATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATAGTAGAACAGATCAATGATATGAGGTGACATAACCAGAATT  900

seq1  C  894
      |
seq2  C  901


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