MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-179C10
Chromosome	3 (Build37)
Map Location	4,316,448 - 4,317,569
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream gene	LOC620283, Zfhx4
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039140 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039140
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Hnf4g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30942 MGI:1353604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG383815 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383815 MGI:3649025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 72 ESTs, 7 Proteins

name	LOC100039157 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039157
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100039167 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039167
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC667709 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 255 ESTs, 11 Proteins pseudo : _no_value

name	LOC620283 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620283
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	Zfhx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80892 MGI:2137668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hnf4g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305146 GeneID:30942 MGI:1353604
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatocyte nuclear factor 4, gamma transcript_id : NM_013920.1

name	EG383815 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369198 GeneID:383815 MGI:3649025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 72 ESTs, 7 Proteins product : predicted gene, EG383815 transcript_id : XM_357274.5

name	Zfhx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656177 GeneID:80892 MGI:2137668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger homeodomain 4 transcript_id : NM_030708.2

name	Hnf4g (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305147 CCDS:CCDS17226.1 GeneID:30942 MGI:1353604
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] codon_start : 1 function : transcription factor product : hepatocyte nuclear factor 4, gamma protein_id : NP_038948.1

name	EG383815 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38076180 GeneID:383815 MGI:3649025
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357274.1

name	Zfhx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656178 GeneID:80892 MGI:2137668
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger homeodomain 4 protein_id : NP_109633.2

name	LOC100039140 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039140
definition	number : 1 pseudo : _no_value

name	LOC100039140 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039140
definition	number : 2 pseudo : _no_value

name	LOC100039157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039157
definition	number : 1 pseudo : _no_value

name	LOC100039167 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039167
definition	number : 1 pseudo : _no_value

name	LOC667709 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250609 GeneID:667709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 255 ESTs, 11 Proteins product : similar to Murine homolog of human ftp-3 pseudo : _no_value transcript_id : XR_032506.1

name	LOC620283 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250588 GeneID:620283
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : similar to mCBP pseudo : _no_value transcript_id : XR_030720.1

clone name	MSMg01-526G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353J23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-209H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437I24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-319E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344D13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-320O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462N05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-494P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247I06
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-179C10.b	B6Ng01-179C10.g
ACC	GA005950	GA005951
length	1,133	1,129
definition	B6Ng01-179C10.b	B6Ng01-179C10.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctatctttctctgatccccatccttttgagatgtatactttggca cttctttgaacatttgtctcttaatgttgttaaagtaaaaatcagaacat tcagatatacaatgtgcagagacagtcaaggagctctttaggtgctcaaa ataggctgtcttcaatttcacctactagactgtttttgttattgttgttt ttatttattttgctgttattctctgccagcaccaatcatacccactaaga gcttaataaatattttcttctctctgagtatatgtgtttatgtgtatata catattcatgaagtcagactttgagtattatacctcaggaactgcccttc ttaattttgagatgtagtttctcatttgactgtaactcatggctgaccaa ataaacttgagaacaactaatctttctttaccagaaccaggatttcagat gtgtaggcatttcatgtaggtttggggatcaaatacaaaatgatatatgt ggctgacaatttctgtaccaactgaattatcttctcagcctcattttaac taatatttaacaatgagtattcaactacagcaaagttagcttcacatatt tttaagtggcaaaggtttcccaaggatgaaaaaccattatgatattttga cactatacagaatctttggtatctcagaaaatgtgacctctttaggaaga atgctaagaatgagaattttatttgtgcaaagaacaaaggcaataaagga aagacattcacaccagattctatatgtataaccactttcatacacttttt tacataaagtagataaataaaaacatactagtgtggtgtcgaggcagagc agcccatggggatcattttttacaaaatgacaatatctttctcttgtaat cttcatagaaaatcaacaaacagaggatcacgttgtcccagaaccattag aagattcagaataaaaatgcaatcctaagccacaatgtaatacaaatgaa gtacaagagtcttcagttattcactatttataatttaagatgaatattga gcccagactttgaatgatgaccccccaagttagcttcagaaccacttggt tcattggtcttaaatccttaagggatcaaaggc	gaattctttgtttacctctgagcccaatttttaatggggttatttgattt cctggagtccaccttcttgaattctttatatatattggatatcagtcccc tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt tgagtcttattgacagtgtcttttgccttacagaagctttgcaattttat gaggtcccatttatcaattctcaattctctttcccaatctcaagccattg ctgttctattgaggaaattttcttctgttcccatatcttcgaggctttcc cccactttctcctctataagtttcagtgtctatggttttatgtggagttc cctaatccactaagatttgcctttagtacaaggagataggaatagataaa ttcgcattcttctacatgataaccgccagttgtgccagtaccatttgttg aaaatgctgtctttttttccactggattgttttagatctcttggtcaaag atcaagtaatcatagaagtgtatgttcatttctgggtcttcaattctatt ctattggtctacttgtctgtcactataccagtaccttgcaattttgatca caattgctctgtagtacagctttaagtcaggcatgttgattcaaaaagag aatcttttatccttaagaaagagtttttgctatcctaggttttttgttat tccagatgaatttggagattgcccttttcaattcgttgaagaattgagtt ggaattttgatggagattccattgaatctgtagtttgcttttggcaagat agccatttttactatattgatcctgccaatccatgaccatgggagatctt tccatctctgagatcttctttaaggttctttctttagtgacttgaagttc ttatcatagagatctttcacttccttagttagagtcacgaaaaagtattt tatattatttatggactatggagaaggtgttgtttccctaatttctttct cagccttgttaatctgtgtgtagagaaatgtccattgactgtttgagtta atttacatatccagatactcactgaactgctaacagttaggagtctccta gtggcatttctagggcacttcatataact
quality values	Open. Hide. 41 22 17 25 58 58 54 32 54 62 62 62 46 62 62 62 62 62 38 47 62 62 62 47 24 62 62 62 62 62 62 62 15 16 12 8 6 9 11 11 10 18 10 10 10 10 11 11 43 56 59 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 34 18 11 9 11 13 12 12 18 23 27 34 25 23 18 18 16 23 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 62 62 54 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 59 56 35 48 28 32 25 27 36 51 59 62 62 62 62 62 62 62 62 62 62 62 62 59 51 49 62 59 59 59 38 32 28 46 51 56 62 59 44 43 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 59 62 47 54 62 62 62 62 54 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 56 47 47 47 62 62 62 62 62 54 49 47 56 62 62 62 62 62 62 47 47 62 62 62 62 62 62 62 62 62 56 62 62 62 62 56 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 56 47 54 62 62 47 45 62 62 62 62 38 47 62 62 62 62 62 62 62 62 62 54 49 54 47 50 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 52 50 50 52 34 62 52 54 58 58 54 52 40 54 45 58 42 50 54 58 46 38 40 52 39 38 46 52 58 54 54 52 38 37 39 39 54 54 54 58 52 40 37 54 37 41 53 47 58 54 52 58 32 39 52 52 58 58 48 36 37 32 42 52 52 52 52 31 58 58 58 54 50 42 14 36 52 42 37 37 41 35 40 49 49 37 47 49 51 31 51 52 42 51 27 42 21 37 40 51 42 32 58 51 42 58 42 54 58 46 25 30 33 58 44 50 52 39 28 34 52 33 28 28 40 29 17 30 32 19 42 21 22 27 29 23 16 15 26 25 11 58 11 25 40 19 23 58 46 40 34 46 19 37 50 32 29 39 26 31 52 29 41 50 31 24 41 40 42 39 32 47 39 28 14 36 29 58 16 35 30 29 26 31 20 52 34 58 54 54 54 54 28 45 12 49 40 50 46 53 34 45 30 40 33 27 54 25 16 13 54 54 54 23 52 24 42 31 53 32 37 29 42 52 23 35 54 31 34 24 53 30 53 18 44 18 19 19 53 10 39 40 17 29 37 31 26 17 21 54 42 33 37 21 29 19 23 36 35 25 31 16 6 9 24 45 39 32 18 25 27 16 13 31 16 21 11 11 31 46 12 14 21 14 9 16 40 10 29 28 18 28 26 29 37 14 11 30 32 51 51 46 9 9 27 8 7 31 12 51 27 16 24 13 40 18 20 8 8 13 14 19 11 18 24 40 25 23 42 31 24 22 34 14 21 27 26 46 8 8 19 36 32 16 20 24 9 30 11 18 23 21 9 18 42 31 23 27 22 31 25 21 9 31 10 34 6 24 31 18 9 10 6 15 6 23 35 43 31 26 17 19 12 23 15 6 9 9 9 10 25 23 16 11 11 10 25 13 7 5 10 26 8 13 7 16 19 32 10 15 11 31 32 12 7 7 8 15 44 11 5 5 17 7 8 33 6 20 19 21 21 7 5 5 12 22 6 6 6 5 10 8 19 34 17 10 5 11 4 4 5 11 16 7 8 17 21 30 8 9 20 14 19 30 30 32 28 8 21 15 5 6 16 7 6 15 16 11 9 11 21 32 8 5 6 10 21 10 17 13 28 7 6 3 3 5 21 24 11 25 14 16 16 28 22 14 7 17 9 13 18 17 9 12 16 4 14 12 17 27 15 9 14 8	Open. Hide. 46 24 37 39 62 62 62 62 62 62 62 30 24 17 29 25 11 12 18 10 23 11 8 10 8 8 9 13 49 62 62 59 62 62 59 62 54 54 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 59 62 18 24 30 18 36 34 34 18 18 13 13 25 23 23 23 40 56 62 62 62 62 62 62 62 62 62 62 62 62 54 62 59 62 62 62 62 54 54 62 62 62 62 62 59 62 54 62 62 62 62 62 62 59 59 59 62 59 62 62 62 49 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 54 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 56 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 36 23 23 32 18 18 23 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 59 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 43 34 36 43 43 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 56 45 45 38 38 56 56 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 45 51 56 44 51 51 56 49 46 56 62 62 56 62 56 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 44 56 62 62 49 62 54 47 62 62 62 62 62 47 54 56 62 62 62 62 62 62 62 62 47 47 47 56 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 54 62 54 54 54 58 58 58 58 58 58 54 54 44 40 43 50 50 52 58 58 58 54 58 58 58 58 58 42 52 40 23 33 54 54 54 58 54 54 58 54 54 54 58 54 52 54 45 31 42 58 52 54 54 52 54 54 54 54 58 52 42 54 54 52 58 54 58 58 58 58 54 52 58 52 54 50 58 47 58 58 49 51 58 49 58 31 53 46 50 46 41 53 50 46 58 58 47 52 58 52 58 53 49 22 58 39 46 53 58 46 49 49 50 50 53 36 12 58 58 58 58 47 58 54 58 28 38 38 33 36 58 58 51 46 43 23 29 48 58 54 39 51 58 20 16 58 50 50 58 51 50 41 24 37 32 39 50 52 40 32 51 17 49 37 50 50 58 58 58 58 39 37 52 32 44 53 37 29 34 46 32 52 54 30 20 52 44 35 19 53 31 34 30 35 49 19 54 39 34 54 45 53 37 17 31 38 53 39 23 52 38 37 44 36 31 51 18 27 18 37 53 34 39 19 39 49 41 34 33 54 54 51 32 40 26 51 37 53 33 53 31 34 41 37 29 23 34 42 33 33 32 45 42 53 31 53 31 35 53 39 39 28 53 53 53 32 45 32 31 31 32 35 52 23 45 31 41 42 32 47 53 51 51 45 35 36 34 31 31 31 33 31 30 36 34 25 51 31 45 31 32 31 31 37 46 31 29 29 32 30 29 38 28 31 43 51 31 42 31 21 9 43 33 48 29 29 32 26 19 27 20 18 25 31 31 18 23 17 37 31 29 36 34 46 9 15 7 15 33 19 14 42 33 41 28 39 27 46 35 11 6 12 32 25 14 25 32 41 19 32 25 27 25 42 30 16 15 25 34 21 11 15 21 37 19 7 7 24 26 46 33 18 21 37 21 14 17 33 28 25 21 10 24 18 31 23 16 9 8 9 14 27 29 38 44 41 47 33 23 32 24 26 33 33 33 14 10 18 22 22 31 25 43 9 15 17 9 11 33 27 34 20 34 7 18 21 15 21 25 18 10 5 24 12 13 32 20 40 30 11 39 25 29 10 22 21 48 32 21 24 36 23 7 8 34 27 20 8 11 6 8 8 7 14 13 16 6 11 6 13 5 6 6 9 10 7 7 27 8 13 28 16 6 26 6 20 20 7 13 15 6 9 11 20 11 3 16 18 18 28 9 15 14 10 15 16 34 31 5 4 6 7 6 4 11 22 9 14 23 8 10 8 10 2 4 7 8 11 9 6 3 1 8 5 8 4 3 8 6 3 3 14 6 4 5 7 3 2 4 4 8 7 4 1 3 3 9 25 6 18 17 8 11 7 14 12 8 15 4 3 4 8 21 25 5 6 11 5 15 5 4 15 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_4316448_4317569
seq2: B6Ng01-179C10.b_47_1179 (reverse)

seq1  GCCTTTGATCCCCTTTAGGATTTAAGA-CACTAGAACAAGTGTGTCTGAA  49
      ||||||||| ||||| ||||||||||| || |  | ||||||  ||||||
seq2  GCCTTTGAT-CCCTTAAGGATTTAAGACCAATGAACCAAGTGGTTCTGAA  49

seq1  GCT-ACTTGGGGGGTCATCATCAATATGTCT-GGCTC-ATA-TCATCTT-  94
      ||| |||||||||||||||||  | | |||| ||||| ||| ||||||| 
seq2  GCTAACTTGGGGGGTCATCATTCA-AAGTCTGGGCTCAATATTCATCTTA  98

seq1  AATTATAAATAGTGAAT-ACTG-AGACTCTTGTACTTCATTTGTATTACA  142
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  AATTATAAATAGTGAATAACTGAAGACTCTTGTACTTCATTTGTATTACA  148

seq1  TTGT-GCTT-GGATTGCATTTTTA-TCTGAATCTTCTAATGGTTCTGGGA  189
      |||| |||| |||||||||||||| |||||||||||||||||||||||||
seq2  TTGTGGCTTAGGATTGCATTTTTATTCTGAATCTTCTAATGGTTCTGGGA  198

seq1  CAAACGTGATCCTCTGTTTGGTGATTTTCTATGAAGATTACAAGAGAAAG  239
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  C-AACGTGATCCTCTGTTTGTTGATTTTCTATGAAGATTACAAGAGAAAG  247

seq1  ATATTGTCATTTTGT-AAAAATGAT-CCCATGGGCTGCTCTGCCTCGACA  287
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  ATATTGTCATTTTGTAAAAAATGATCCCCATGGGCTGCTCTGCCTCGACA  297

seq1  CCACACTAGTATGTTTTTATTTATCTACTTTATGTAAAAAAGTGTATGAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAGTATGTTTTTATTTATCTACTTTATGTAAAAAAGTGTATGAA  347

seq1  AGTGGTTATACATATAGAATCTGGTGTGAATGTC-TTCCTTTATTGCCTT  386
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTGGTTATACATATAGAATCTGGTGTGAATGTCTTTCCTTTATTGCCTT  397

seq1  TGTTCTTTGCACAAATAAAATTCTCATTCTTAGCATTCTTCCTAAAGAGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGCACAAATAAAATTCTCATTCTTAGCATTCTTCCTAAAGAGG  447

seq1  TCACATTTTCTGAGATACCAAAGATTCTGTATAGTGTCAAAATATCATAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTCTGAGATACCAAAGATTCTGTATAGTGTCAAAATATCATAA  497

seq1  TGGTTTTTCATCCTTGGGAAACCTTTGCCACTTAAAAATATGTGAAGCTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCATCCTTGGGAAACCTTTGCCACTTAAAAATATGTGAAGCTA  547

seq1  ACTTTGCTGTAGTTGAATACTCATTGTTAAATATTAGTTAAAATGAGGCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGTAGTTGAATACTCATTGTTAAATATTAGTTAAAATGAGGCT  597

seq1  GAGAAGATAATTCAGTTGGTACAGAAATTGTCAGCCACATATATCATTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATAATTCAGTTGGTACAGAAATTGTCAGCCACATATATCATTTT  647

seq1  GTATTTGATCCCCAAACCTACATGAAATGCCTACACATCTGAAATCCTGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGATCCCCAAACCTACATGAAATGCCTACACATCTGAAATCCTGG  697

seq1  TTCTGGTAAAGAAAGATTAGTTGTTCTCAAGTTTATTTGGTCAGCCATGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAAAGAAAGATTAGTTGTTCTCAAGTTTATTTGGTCAGCCATGA  747

seq1  GTTACAGTCAAATGAGAAACTACATCTCAAAATTAAGAAGGGCAGTTCCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTCAAATGAGAAACTACATCTCAAAATTAAGAAGGGCAGTTCCT  797

seq1  GAGGTATAATACTCAAAGTCTGACTTCATGAATATGTATATACACATAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATAATACTCAAAGTCTGACTTCATGAATATGTATATACACATAAA  847

seq1  CACATATACTCAGAGAGAAGAAAATATTTATTAAGCTCTTAGTGGGTATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACTCAGAGAGAAGAAAATATTTATTAAGCTCTTAGTGGGTATG  897

seq1  ATTGGTGCTGGCAGAGAATAACAGCAAAATAAATAAAAACAACAATAACA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGCTGGCAGAGAATAACAGCAAAATAAATAAAAACAACAATAACA  947

seq1  AAAACAGTCTAGTAGGTGAAATTGAAGACAGCCTATTTTGAGCACCTAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTCTAGTAGGTGAAATTGAAGACAGCCTATTTTGAGCACCTAAA  997

seq1  GAGCTCCTTGACTGTCTCTGCACATTGTATATCTGAATGTTCTGATTTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTTGACTGTCTCTGCACATTGTATATCTGAATGTTCTGATTTTT  1047

seq1  ACTTTAACAACATTAAGAGACAAATGTTCAAAGAAGTGCCAAAGTATACA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACAACATTAAGAGACAAATGTTCAAAGAAGTGCCAAAGTATACA  1097

seq1  TCTCAAAAGGATGGGGATCAGAGAAAGATAGAATTC  1122
      ||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGGATGGGGATCAGAGAAAGATAGAATTC  1133

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information