BAC Information

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BAC

Clone NameB6Ng01-179E10
Chromosome3 (Build37)
Map Location 36,857,395 - 37,053,351
singlet/doubletdoublet
Overlap gene4932438A13Rik, Tenr, LOC652987, Il2
Upstream geneMccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Downstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179E10.bB6Ng01-179E10.g
ACCGA006041GA006042
length893868
definitionB6Ng01-179E10.b B6Ng01-179E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,857,395 - 36,858,274)(37,052,486 - 37,053,351)
sequence
gaattctttaatctttcaaaaaggaattgataaattcattgttaactcta
gaatcgtcttactacattggaggtagcattattttctttacatattttat
ttatttttctgccttttcagaataccaagatgcctttttaatacaactca
tatattaatgtctgatttttggtttttttcttaaaaggattttcattgtg
ttctctcaataatagacattgggacctgtgccatcactgccattcccttt
gaaaagtccaaagttttatttactcttgaagaattagatgaatttacttt
tgtagatgagacagatcaacaagctatcccagatgtaacacggataggtc
ccagccaagaaaaatggggctggataatgtttgaatgtggacttgaaaat
ttaactataaaaggtaaacttttaactcctgagttctgctttggtgggga
tttaagtgtatttaacagtttttactttttttagagtagagccttgccat
ataagaagtaaacatttcatgtgaattcttcctttaatgaaaactactga
tttatacttgtttcttatataagacaaggggaggaaggaaagtctgatct
ggtttatgagtaatactttaaaagcaggaaagttgaattagttgtaagac
tttcaggcttaatcttacatgattacagtaacttaaaatactagtagctc
tgtctccacaccttttacctgcaaaagtcatacataactctcttagataa
aggcaaagcctagtgaggaagaacatgatcttgatgaagttctattacag
attattttagagtataacagtgaaacacatcttacttttttttcctaaca
agtggtctccctttattttttataggatgatagtacaatcttg
gaattcacatgctaggtggttctcaccccagtccagaaaggctgagaaca
cagaagtgggaggtggggtgatggcctctgtcagggctggaggcgactgc
agatggatgactttttaatattttttggcactcttttctttctataaaac
atttttacagtgaatgcacagtactctctaaatggtacagttctgttcgc
tgtataaccaaagggtcctttatgtgacgctggccaggctcttcttgggg
tcagggataagctaaaaggcccggaggtgcccttctcccgtcccctgtgg
tatctcgtggtcaattcactcctgagcggtagataacctattcagggcat
cgggagtgttacaaaacaaccgcatacgggccagttctccaggcttggag
acgtggagcgatttcccatttctgttctcggactgtaagctaaagtgtgt
ggggtttcacggcgcctctctagaagtcagcttggaagatttgctcctat
gtgaagtggcgttctgttccaactgggcagaggatgcaaacacaggtaaa
aggagagcttccttcgctttcttggctgcctctggaaatccaaagagcct
ggcaattttgacacagtaagagagtcttcttactcctaactctgctcagt
tagggctagcctgggaatgtgacagtatggtgagcaggtctttttgccct
gcttaaacctgtgattaaatcccaggtactgtgagaagcaatcaggacaa
aagtcgaggctgaagcccctcttctctgctcctccctccgctctggctgc
ttcagaatcttttgcccactgagaactgagttgtgcagatgggaatgggg
taggggcgagggttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36857395_36858274
seq2: B6Ng01-179E10.b_34_926

seq1  GAATTCTTTAATCTTTCAAAAAGGAATTGATAAATTCATTGTTAACTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCTTTCAAAAAGGAATTGATAAATTCATTGTTAACTCTA  50

seq1  GAATCGTCTTACTACATTGGAGGTAGCATTATTTTCTTTACATATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGTCTTACTACATTGGAGGTAGCATTATTTTCTTTACATATTTTAT  100

seq1  TTATTTTTCTGCCTTTTCAGAATACCAAGATGCCTTTTTAATACAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTGCCTTTTCAGAATACCAAGATGCCTTTTTAATACAACTCA  150

seq1  TATATTAATGTCTGATTTTTGGTTTTTTTCTTAAAAGGATTTTCATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATGTCTGATTTTTGGTTTTTTTCTTAAAAGGATTTTCATTGTG  200

seq1  TTCTCTCAATAATAGACATTGGGACCTGTGCCATCACTGCCATTCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAATAATAGACATTGGGACCTGTGCCATCACTGCCATTCCCTTT  250

seq1  GAAAAGTCCAAAGTTTTATTTACTCTTGAAGAATTAGATGAATTTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCCAAAGTTTTATTTACTCTTGAAGAATTAGATGAATTTACTTT  300

seq1  TGTAGATGAGACAGATCAACAAGCTATCCCAGATGTAACACGGATAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGAGACAGATCAACAAGCTATCCCAGATGTAACACGGATAGGTC  350

seq1  CCAGCCAAGAAAAATGGGGCTGGATAATGTTTGAATGTGGACTTGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAGAAAAATGGGGCTGGATAATGTTTGAATGTGGACTTGAAAAT  400

seq1  TTAACTATAAAAGGTAAACTTTTAACTCCTGAGTTCTGCTTTGGTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATAAAAGGTAAACTTTTAACTCCTGAGTTCTGCTTTGGTGGGGA  450

seq1  TTTAAGTGTATTTAACAGTTTTTACTTTTTTTAGAGTAGAGCCTTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTATTTAACAGTTTTTACTTTTTTTAGAGTAGAGCCTTGCCAT  500

seq1  ATAAGAAGTAAACATTTCATGTGAATTCTTCCTTTAATGAAAACTACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGTAAACATTTCATGTGAATTCTTCCTTTAATGAAAACTACTGA  550

seq1  TTTATACTTGTTTCTTATATAAGACAAGGGGAGGAAGGAAAGTCTGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTTGTTTCTTATATAAGACAAGGGGAGGAAGGAAAGTCTGATCT  600

seq1  GG-TTATGAGTAATACTTT-AAAGCAGGAAAGTTGAA-TAGTTGTAAGAC  647
      || |||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GGTTTATGAGTAATACTTTAAAAGCAGGAAAGTTGAATTAGTTGTAAGAC  650

seq1  TTTCAGGCTTAATCTTACATGA-TACAGTAACTTAAAATACTAGTAGCTC  696
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCAGGCTTAATCTTACATGATTACAGTAACTTAAAATACTAGTAGCTC  700

seq1  TGTCTCCACACCTTTTACCTGC-AAAGTCATACATAACTCTCTTAGATAA  745
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCTCCACACCTTTTACCTGCAAAAGTCATACATAACTCTCTTAGATAA  750

seq1  AGGCAAAGCCTAGTGAGGAAGAACATGATCTTGATGAAGTTCTA-TACAG  794
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGCAAAGCCTAGTGAGGAAGAACATGATCTTGATGAAGTTCTATTACAG  800

seq1  A-TATTTTAGAGTATAACAGTGAAACACATC-TAC-TTTTTTTCCTAACA  841
      | ||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  ATTATTTTAGAGTATAACAGTGAAACACATCTTACTTTTTTTTCCTAACA  850

seq1  AGTGG-CTCCCTTTA-TTTTTATAGGAGGA-AG-ACAATCTGG  880
      ||||| ||||||||| ||||||||||| || || ||||||| |
seq2  AGTGGTCTCCCTTTATTTTTTATAGGATGATAGTACAATCTTG  893

seq1: chr3_37052486_37053351
seq2: B6Ng01-179E10.g_71_938 (reverse)

seq1  CCCCCACCCTCGCCCCTACCCCATTCCCATCTGCACAACTCAGTTCTCAG  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCCTCGCCCCTACCCCATTCCCATCTGCACAACTCAGTTCTCAG  50

seq1  TGGGC-AAAGATTCTGAAGCAGCCAGAGCGGAGGGAGGAGCAGAGAAGAG  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAAAGATTCTGAAGCAGCCAGAGCGGAGGGAGGAGCAGAGAAGAG  100

seq1  GGGCTTCAGCCTCGACCTTTGTCCTGATTGCTTCTCACAGTACCTGGGAT  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCTTCAGCCTCGACTTTTGTCCTGATTGCTTCTCACAGTACCTGGGAT  150

seq1  TTAATCACAGGTTTGAGCA-GGCAAAAAGACCTGCTCACCATACTGTCAC  198
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TTAATCACAGGTTTAAGCAGGGCAAAAAGACCTGCTCACCATACTGTCAC  200

seq1  ATTCCCAGGCTAGCCCTAACTGAGCAGAGTTAGGAGTAAGAAGACTCTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGGCTAGCCCTAACTGAGCAGAGTTAGGAGTAAGAAGACTCTCT  250

seq1  TACTGTGTCAAAATTGCCAGGCTCTTTGGATTTCCAGAGGCAGCCAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTCAAAATTGCCAGGCTCTTTGGATTTCCAGAGGCAGCCAAGAA  300

seq1  AGCGAAGGAAGCTCTCCTTTTACCTGTGTTTGCATCCTCTGCCCAGTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGGAAGCTCTCCTTTTACCTGTGTTTGCATCCTCTGCCCAGTTGG  350

seq1  AACAGAACGCCACTTCACATAGGAGCAAATCTTCCAAGCTGACTTCTAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACGCCACTTCACATAGGAGCAAATCTTCCAAGCTGACTTCTAGA  400

seq1  GAGGCGCCGTGAAACCCCACACACTTTAGCTTACAGTCCGAGAACAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGCCGTGAAACCCCACACACTTTAGCTTACAGTCCGAGAACAGAAA  450

seq1  TGGGAAATCGCTCCACGTCTCCAAGCCTGGAGAACTGGCCCGTATGCGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATCGCTCCACGTCTCCAAGCCTGGAGAACTGGCCCGTATGCGGT  500

seq1  TGTTTTGTAACACTCCCGATGCCCTGAATAGGTTATCTACCGCTCAGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAACACTCCCGATGCCCTGAATAGGTTATCTACCGCTCAGGAG  550

seq1  TGAATTGACCACGAGATACCACAGGGGACGGGAGAAGGGCACCTCCGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGACCACGAGATACCACAGGGGACGGGAGAAGGGCACCTCCGGGC  600

seq1  CTTTTAGCTTATCCCTGACCCCAAGAAGAGCCTGGCCAGCGTCACATAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCTTATCCCTGACCCCAAGAAGAGCCTGGCCAGCGTCACATAAA  650

seq1  GGACCCTTTGGTTATACAGCGAACAGAACTGTACCATTTAGAGAGTACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTTGGTTATACAGCGAACAGAACTGTACCATTTAGAGAGTACTG  700

seq1  TGCATTCACTGTAAAAATGTTTTATAGAAAGAAAAGAGTGCCAAAAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCACTGTAAAAATGTTTTATAGAAAGAAAAGAGTGCCAAAAAATA  750

seq1  TTAAAAAGTCATCCATCTGCAGTCGCCTCCAGCCCTGACAGAGGCCATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTCATCCATCTGCAGTCGCCTCCAGCCCTGACAGAGGCCATCA  800

seq1  CCCCACCTCCCACTTCTGTGTTCTCAGCCTTTCTGGACTGGGGTGAGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCCACTTCTGTGTTCTCAGCCTTTCTGGACTGGGGTGAGAAC  850

seq1  CACCTAGCATGTGAATTC  866
      ||||||||||||||||||
seq2  CACCTAGCATGTGAATTC  868