BAC Information

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BAC

Clone NameB6Ng01-179G21
Chromosome3 (Build37)
Map Location 77,301,510 - 77,412,177
singlet/doubletdoublet
Overlap geneDnmt3a-ps1
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179G21.bB6Ng01-179G21.g
ACCGA006151GA006152
length1,0441,136
definitionB6Ng01-179G21.b B6Ng01-179G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,411,150 - 77,412,177)(77,301,510 - 77,302,648)
sequence
gaattctttttctatgtttaatttcccactacttttaattacattttgca
gcacacataacttatactgaattgttcttgaaatcagcatttgaatattt
cggtgtacctacataatctgacatgctttatttttttaatgatgttattt
cctactaagagctcttccattaggaatgtgtataattcaaagttaattat
aagtaagggtattatgatgtcaatatttaacaactttaagccgcaatgat
gaagcaagccagaatgctgttagagagatgcccttgacaaacatcttagt
cagccatatcaactggattggcaaaggttaagactgacagttgcctctat
ttgctgtgaaagtggttaccatgaattcttgcattttatcttctttcagt
ggagtgaaagtttaagtacctagaataattatctgaaggctgagcagatt
ggactttgccttctcatctgcattcagtggcactgagaactaatgaagac
aaacataagaagaaaagaaaagaaaacactgacaggaaaaatacactgtt
cgtacgccatttcttaatttacaaaaaaaaaaaaataaggtggctggtgt
gacgaataaatatggagtccaccatgtatcatcattgcacgtgactggaa
aataattgctctgaaggtctttaattgtttttcatcttatcttaaaaaaa
aaaaagtcaagccaggtcaggaagaaagcagactaagaaataattactat
ctgtagacattggctgtacatgtagcctcaaagcagaggtctctaatgca
acaacactcataaacagaaaaagaggacccactcttgcagaacataaata
gacaataataatgcacaaagcataaattgcatttttctttctataaatta
cttaaataatttgtcatgtaatttcctttcgatggcaaaaatcctctgtg
atccattgagcttcacattaaaggaaaccagatgcttttcttatttttat
tgaaaaaaaaaattgcgcttacttagtttatccattaaatttga
gaattcattgcaaaatccttctattctttttacttgaggcctaaacttta
atagctaaaatcatgcagagttgtaaaatagagctaattatcaatgatct
ccccaaaccccttctttgcacaatcaagatgacctctttgtgatgcaatt
tgtattgtcatcttgtgataagattataggttctaccagctccacaccat
ttacattcttttatagaatgtggcctttctttaatgatatgcctcatact
ctatatcttttgttttatttctattttctggcttatttatacaggtattc
tgatgtccctcccccacaagatatccccatatagcatatactgacctttt
acttgatattcttttgtcccaacctcccacacactggaaaacacaggcga
gtactatcccaggtttcatttcaagtcctacttaataaagtattttacta
atttgcatcttgctcacagacaacatctgggtctgtgctaccatattaca
cttggctgcctacccacaggaggtggtttccctcctgaactgtgatgatt
ttaaaacatggtaataagtctcgttaacttatatatttccaaactatgta
ctacacctagaatgtaagcagacatccagaaaatattgaattaactcaag
aataagcaccaaagtgagccttttaattgaaaactgctggactatatcca
ttctaactactgttcattgtaaaggctcccatctcaaatgaaccctgaac
tgttcaacaagttagtagaccagagcactgggaatttagtggaataagca
tagctcaatatctactgttagagatttaaaagaaagtttaagtcccacat
aacacttggaaaagaatcattcttatcctacttttctggtttcttctttc
tgttgtcaacacacatgctctctctccagctctctctccaagcacatgct
tcacgtattttctgttcatacatttcatctttcttgctatatgttctgga
ctctcctgtcatgactgctaatgaagtgcatgctaccactcccgttttca
gttcataggaagttatcttgaattgctactcaattatgtactactaacta
caaagtgattgcagaaccactagctgctgctattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77411150_77412177
seq2: B6Ng01-179G21.b_36_1079 (reverse)

seq1  TCAAA-TTAATGGATAAACTAAGT-AGCCCA--TTTTTTTTTCAAT-AAA  45
      ||||| |||||||||||||||||| ||| ||  ||||||||||||| |||
seq2  TCAAATTTAATGGATAAACTAAGTAAGCGCAATTTTTTTTTTCAATAAAA  50

seq1  ATA--GAAAGCATCTGGTTTCCTTTAATGTG-AGCTCAATGGATCACAGA  92
      |||   ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAAGAAAAGCATCTGGTTTCCTTTAATGTGAAGCTCAATGGATCACAGA  100

seq1  -GATTTTTG-CATCGAAAGGAAATTACATGACAAATTATTTAAGTAATTT  140
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGCCATCGAAAGGAAATTACATGACAAATTATTTAAGTAATTT  150

seq1  ATAGAA--GAAAATGCAA-TTATGCTTTGTTGCATTATTA-TGTCTATTT  186
      ||||||   ||||||||| |||||||||| |||||||||| |||||||||
seq2  ATAGAAAGAAAAATGCAATTTATGCTTTG-TGCATTATTATTGTCTATTT  199

seq1  ATGTTCTGC-AGAGTGGGTCCTC-TTTTCTG-TTATG-GTGTTGTTGCAT  232
      ||||||||| ||||||||||||| ||||||| ||||| ||||||||||||
seq2  ATGTTCTGCAAGAGTGGGTCCTCTTTTTCTGTTTATGAGTGTTGTTGCAT  249

seq1  TAGAGACCTCTGCTTTTGAGGCTACATGTACAGCCAATGTCTACAGATAG  282
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTCTGC-TTTGAGGCTACATGTACAGCCAATGTCTACAGATAG  298

seq1  TAATTATTTCTTAGTCTGCTTTCTTCCTGACCTGGCTTGACTTTTTTTTT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTCTTAGTCTGCTTTCTTCCTGACCTGGCTTGACTTTTTTTTT  348

seq1  TTTAAGATAAGATGAAAAACAATTAAAGACCTTCAGAGCAATTATTTTCC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATAAGATGAAAAACAATTAAAGACCTTCAGAGCAATTATTTTCC  398

seq1  AGTCACGTGCAATGATGATACATGGTGGACTCCATATTTATTCGTCACAC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGTGCAATGATGATACATGGTGGACTCCATATTTATTCGTCACAC  448

seq1  CAGCCACCTTATTTTTTTTTTTTTGTAAATTAAGAAATGGCGTACGAACA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCTTATTTTTTTTTTTTTGTAAATTAAGAAATGGCGTACGAACA  498

seq1  GTGTATTTTTCCTGTCAGTGTTTTCTTTTCTTTTCTTCTTATGTTTGTCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTTCCTGTCAGTGTTTTCTTTTCTTTTCTTCTTATGTTTGTCT  548

seq1  TCATTAGTTCTCAGTGCCACTGAATGCAGATGAGAAGGCAAAGTCCAATC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTTCTCAGTGCCACTGAATGCAGATGAGAAGGCAAAGTCCAATC  598

seq1  TGCTCAGCCTTCAGATAATTATTCTAGGTACTTAAACTTTCACTCCACTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTTCAGATAATTATTCTAGGTACTTAAACTTTCACTCCACTG  648

seq1  AAAGAAGATAAAATGCAAGAATTCATGGTAACCACTTTCACAGCAAATAG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATAAAATGCAAGAATTCATGGTAACCACTTTCACAGCAAATAG  698

seq1  AGGCAACTGTCAGTCTTAACCTTTGCCAATCCAGTTGATATGGCTGACTA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTGTCAGTCTTAACCTTTGCCAATCCAGTTGATATGGCTGACTA  748

seq1  AGATGTTTGTCAAGGGCATCTCTCTAACAGCATTCTGGCTTGCTTCATCA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTGTCAAGGGCATCTCTCTAACAGCATTCTGGCTTGCTTCATCA  798

seq1  TTGCGGCTTAAAGTTGTTAAATATTGACATCATAATACCCTTACTTATAA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGCTTAAAGTTGTTAAATATTGACATCATAATACCCTTACTTATAA  848

seq1  TTAACTTTGAATTATACACATTCCTAATGGAAGAGCTCTTAGTAGGAAAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTGAATTATACACATTCCTAATGGAAGAGCTCTTAGTAGGAAAT  898

seq1  AACATCATTAAAAAAATAAAGCATGTCAGATTATGTAGGTACACCGAAAT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATTAAAAAAATAAAGCATGTCAGATTATGTAGGTACACCGAAAT  948

seq1  ATTCAAATGCTGATTTCAAGAACAATTCAGTATAAGTTATGTGTGCTGCA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATGCTGATTTCAAGAACAATTCAGTATAAGTTATGTGTGCTGCA  998

seq1  AAATGTAATTAAAAGTAGTGGGAAATTAAACATAGAAAAAGAATTC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATTAAAAGTAGTGGGAAATTAAACATAGAAAAAGAATTC  1044

seq1: chr3_77301510_77302648
seq2: B6Ng01-179G21.g_64_1199

seq1  GAATTCATTGCAAAATCCTTCTATTCTTTTTACTTGAGGCCTAAACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAAAATCCTTCTATTCTTTTTACTTGAGGCCTAAACTTTA  50

seq1  ATAGCTAAAATCATGCAGAGTTGTAAAATAGAGCTAATTATCAATGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAAATCATGCAGAGTTGTAAAATAGAGCTAATTATCAATGATCT  100

seq1  CCCCAAACCCCTTCTTTGCACAATCAAGATGACCTCTTTGTGATGCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACCCCTTCTTTGCACAATCAAGATGACCTCTTTGTGATGCAATT  150

seq1  TGTATTGTCATCTTGTGATAAGATTATAGGTTCTACCAGCTCCACACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTCATCTTGTGATAAGATTATAGGTTCTACCAGCTCCACACCAT  200

seq1  TTACATTCTTTTATAGAATGTGGCCTTTCTTTAATGATATGCCTCATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTTTTATAGAATGTGGCCTTTCTTTAATGATATGCCTCATACT  250

seq1  CTATATCTTTTGTTTTATTTCTATTTTCTGGCTTATTTATACAGGTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTTTGTTTTATTTCTATTTTCTGGCTTATTTATACAGGTATTC  300

seq1  TGATGTCCCTCCCCCACAAGATATCCCCATATAGCATATACTGACCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCCTCCCCCACAAGATATCCCCATATAGCATATACTGACCTTTT  350

seq1  ACTTGATATTCTTTTGTCCCAACCTCCCACACACTGGAAAACACAGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATTCTTTTGTCCCAACCTCCCACACACTGGAAAACACAGGCGA  400

seq1  GTACTATCCCAGGTTTCATTTCAAGTCCTACTTAATAAAGTATTTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATCCCAGGTTTCATTTCAAGTCCTACTTAATAAAGTATTTTACTA  450

seq1  ATTTGCATCTTGCTCACAGACAACATCTGGGTCTGTGCTACCATATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATCTTGCTCACAGACAACATCTGGGTCTGTGCTACCATATTACA  500

seq1  CTTGGCTGCCTACCCACAGGAGGTGGTTTCCCTCCTGAACTGTGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGCCTACCCACAGGAGGTGGTTTCCCTCCTGAACTGTGATGATT  550

seq1  TTAAAACATGGTAATAAGTCTCGTTAACTTATATATTTCCAAACTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATGGTAATAAGTCTCGTTAACTTATATATTTCCAAACTATGTA  600

seq1  CTACACCTAGAATGTAAGCAGACATCCAGAAAATATTGAATTAACTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTAGAATGTAAGCAGACATCCAGAAAATATTGAATTAACTCAAG  650

seq1  AATAAGCACCAAAGTGAGCCTTTTAATTGAAAACTGCTGGACTATATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACCAAAGTGAGCCTTTTAATTGAAAACTGCTGGACTATATCCA  700

seq1  TTCTAACTACTGTTCATTGTAAAGGCTCCCATCTCAAATGAACCCTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTACTGTTCATTGTAAAGGCTCCCATCTCAAATGAACCCTGAAC  750

seq1  TGTTCAACAAGTTAGTAGACCAGAGCACTGGGAATTTAGTGGAATAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACAAGTTAGTAGACCAGAGCACTGGGAATTTAGTGGAATAAGCA  800

seq1  TAGCTCAATATCTACTGTTAGAGATTTAAAAGAAAGTTTAAGTCCCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAATATCTACTGTTAGAGATTTAAAAGAAAGTTTAAGTCCCACAT  850

seq1  AACACTTGGAAAAGAATCATTCTTATCCTACTTTTTCTGGTTTCTTCTTT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACACTTGGAAAAGAATCATTCTTATCCTAC-TTTTCTGGTTTCTTCTTT  899

seq1  CTGTTGTCAACACACATGCTCTCTCTCCAGCTCTCTCTCCAAGCACATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCAACACACATGCTCTCTCTCCAGCTCTCTCTCCAAGCACATGC  949

seq1  TTCACGTATTTTCTGTTTCATACATTTCATCTTTCTTGCTAATATGTTCT  1000
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TTCACGTATTTTCTG-TTCATACATTTCATCTTTCTTGCT-ATATGTTCT  997

seq1  GGACTCTCCTGTCATGACTGCTAATTGAAGTGCCATGCTAACACTCCC-T  1049
      |||||||||||||||||||||||| ||||||| ||||||| ||||||| |
seq2  GGACTCTCCTGTCATGACTGCTAA-TGAAGTG-CATGCTACCACTCCCGT  1045

seq1  TTTCAGTTCATAGGGAAAGTATCTGAAATTGC-ACCCA--TATGTACTAC  1096
      |||||||||||| ||||  |||||  |||||| || ||  ||||||||| 
seq2  TTTCAGTTCATA-GGAAGTTATCTTGAATTGCTACTCAATTATGTACTA-  1093

seq1  CAAACTACAAAAGTGA-TGCAAGACCACTAGCTGCTGCTATTAA  1139
      | |||||| ||||||| ||||  |||||||||||||||||||||
seq2  CTAACTAC-AAAGTGATTGCAGAACCACTAGCTGCTGCTATTAA  1136