BAC Information

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BAC

Clone NameB6Ng01-179K21
Chromosome3 (Build37)
Map Location 95,411,777 - 95,532,106
singlet/doubletdoublet
Overlap geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4
Upstream geneTuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179K21.bB6Ng01-179K21.g
ACCGA006331GA006332
length565891
definitionB6Ng01-179K21.b B6Ng01-179K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,411,777 - 95,412,347)(95,531,248 - 95,532,106)
sequence
agtactcgtttcagaacattctttgttttcttccccctctcctagggcta
cacatctttctggaatgactgtatatcatctggactgcgaggaggcattc
tgatagagctggccatgcggggtcgaatctatctggaacctcccaccatg
cgtaagaagcgactcctagacagaaaggtacaatatcctctgaattatag
aagtcaaataccaatggtacattttgagaaaataagaacatttgagggca
gaaaagatagttcagcagttaaaaccattagttgttcttgcagaggatcc
agatttggttcccagtgcccacatggtggttaacagctgtctataactcc
agtcccagggttctgaatctcttctggcttcctcaggcattgcacacatg
tgatgcacagagtacatacgtacaagcaaaacactcacgtacataaaaga
aaattaagagtgctagacaaggtaacactggttcagctgtcccatcctct
acttggtttaattatcttatatagagtcatagaagttcaaggtcagcctg
gcctacagggcaagt
gaattcaagaattcaatcttaagttcaagtcagctatggctaccaagtaa
aaaaataaaataaaaaatgaaaaataaacttatctcaaaaaatataaaaa
tgagtagccttggccagctttgaatttgtgactttcctggagctgggatg
atagcatgtgccactgtgtacaggtcattttctaccctttttcctcattg
tgcatcttactgctatgtctacatactgctaaaaatttgttcttgtttac
tttgtgtcttcctggaaattgaacccaagggccctcgcgtgcacatcagc
aaacactatcacggcgctgtatttctatcattctagttggtccttattta
agagctctgtaatttttagttctcagaattcacttttgcgtgagtgtata
catcgtgggcaagcacgctaccactgagctacactcatctcccagaattc
atgtctgtgttttgatcctatttaaatttgctatgaagatgagaaggtag
ctcagtggatcgagtggctagcattcgaaaggctctatgtttgaacctca
gaacagtggggcttatctataatcccaacactccagatgtggagacagga
ggatcagaaatacaaggtcatttttggctacataccaagttcaaggccag
cctgggttacatgctgtcttaaaataagtaaatcggatgtatcttttttt
ttttcccttaaacattttatttttttatctgtgtgagtgttttgcctgca
tttatataatgtataccacatgtgtgtctggtgcccttgaaagcctaggg
tggtcatggctttatgcctttagtttccagccatctggatagacagaggc
agtcaatctcctgcccagtttcagggtctagtctgggtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95411777_95412347
seq2: B6Ng01-179K21.b_42_612

seq1  GAATTCAGTACTCGTTTCAGAACATTCTTTGTTTTCTTCCCCCTCTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTCGTTTCAGAACATTCTTTGTTTTCTTCCCCCTCTCCTA  50

seq1  GGGCTACACATCTTTCTGGAATGACTGTATATCATCTGGACTGCGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACATCTTTCTGGAATGACTGTATATCATCTGGACTGCGAGGAG  100

seq1  GCATTCTGATAGAGCTGGCCATGCGGGGTCGAATCTATCTGGAACCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGATAGAGCTGGCCATGCGGGGTCGAATCTATCTGGAACCTCCC  150

seq1  ACCATGCGTAAGAAGCGACTCCTAGACAGAAAGGTACAATATCCTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCGTAAGAAGCGACTCCTAGACAGAAAGGTACAATATCCTCTGAA  200

seq1  TTATAGAAGTCAAATACCAATGGTACATTTTGAGAAAATAAGAACATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGTCAAATACCAATGGTACATTTTGAGAAAATAAGAACATTTG  250

seq1  AGGGCAGAAAAGATAGTTCAGCAGTTAAAACCATTAGTTGTTCTTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAAAAGATAGTTCAGCAGTTAAAACCATTAGTTGTTCTTGCAGA  300

seq1  GGATCCAGATTTGGTTCCCAGTGCCCACATGGTGGTTAACAGCTGTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGATTTGGTTCCCAGTGCCCACATGGTGGTTAACAGCTGTCTAT  350

seq1  AACTCCAGTCCCAGGGTTCTGAATCTCTTCTGGCTTCCTCAGGCATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGTCCCAGGGTTCTGAATCTCTTCTGGCTTCCTCAGGCATTGCA  400

seq1  CACATGTGATGCACAGAGTACATACGTACAAGCAAAACACTCACGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGATGCACAGAGTACATACGTACAAGCAAAACACTCACGTACAT  450

seq1  AAAAGAAAATTAAGAGTGCTAGACAAGGTAACACTGGTTCAGCTGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATTAAGAGTGCTAGACAAGGTAACACTGGTTCAGCTGTCCCA  500

seq1  TCCTCTACTTGGTTTAATTATCTTATATAGAGTCATAGAAGTTCAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACTTGGTTTAATTATCTTATATAGAGTCATAGAAGTTCAAGGTC  550

seq1  AGCCTGGCCTACAGGGCAAGT  571
      |||||||||||||||||||||
seq2  AGCCTGGCCTACAGGGCAAGT  571

seq1: chr3_95531248_95532106
seq2: B6Ng01-179K21.g_67_936 (reverse)

seq1  AACT-GGCA-GAGATTGACTGCCTCTGTCT-TCCAGGT-GCTGG-AACTA  45
      |||| |||| |||||||||||||||||||| ||||| | ||||| |||||
seq2  AACTGGGCAGGAGATTGACTGCCTCTGTCTATCCAGATGGCTGGAAACTA  50

seq1  AAGGCAT-AAGCCATGACCACCCTA-GCCTTCAAGGGCACCAGACACACA  93
      ||||||| ||||||||||||||||| || |||||||||||||||||||||
seq2  AAGGCATAAAGCCATGACCACCCTAGGCTTTCAAGGGCACCAGACACACA  100

seq1  TGTGGTATACA-TATATAAATGCAGGCAAAACACTCACACAGATAAAAAA  142
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATACATTATATAAATGCAGGCAAAACACTCACACAGATAAAAAA  150

seq1  --TAAATGTTTAAGGG-AAAAAAAAAAGATACATCCGATTTACTTATTTT  189
         ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAAAATGTTTAAGGGAAAAAAAAAAAGATACATCCGATTTACTTATTTT  200

seq1  AAGACAGCATGTAACCCAGGCTGGCCTTGAACTTGGTATGTAGCCAAAAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCATGTAACCCAGGCTGGCCTTGAACTTGGTATGTAGCCAAAAA  250

seq1  TGACCTTGTATTTCTGATCCTCCTGTCTCCACATCTGGAGTGTTGGGATT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGTATTTCTGATCCTCCTGTCTCCACATCTGGAGTGTTGGGATT  300

seq1  ATAGATAAGCCCCACTGTTCTGAGGTTCAAACATAGAGCCTTTCGAATGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAGCCCCACTGTTCTGAGGTTCAAACATAGAGCCTTTCGAATGC  350

seq1  TAGCCACTCGATCCACTGAGCTACCTTCTCATCTTCATAGCAAATTTAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTCGATCCACTGAGCTACCTTCTCATCTTCATAGCAAATTTAAA  400

seq1  TAGGATCAAAACACAGACATGAATTCTGGGAGATGAGTGTAGCTCAGTGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCAAAACACAGACATGAATTCTGGGAGATGAGTGTAGCTCAGTGG  450

seq1  TAGCGTGCTTGCCCACGATGTATACACTCACGCAAAAGTGAATTCTGAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTGCTTGCCCACGATGTATACACTCACGCAAAAGTGAATTCTGAGA  500

seq1  ACTAAAAATTACAGAGCTCTTAAATAAGGACCAACTAGAATGATAGAAAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATTACAGAGCTCTTAAATAAGGACCAACTAGAATGATAGAAAT  550

seq1  ACAGCGCCGTGATAGTGTTTGCTGATGTGCACGCGAGGGCCCTTGGGTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCCGTGATAGTGTTTGCTGATGTGCACGCGAGGGCCCTTGGGTTC  600

seq1  AATTTCCAGGAAGACACAAAGTAAACAAGAACAAATTTTTAGCAGTATGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGGAAGACACAAAGTAAACAAGAACAAATTTTTAGCAGTATGT  650

seq1  AGACATAGCAGTAAGATGCACAATGAGGAAAAAGGGTAGAAAATGACCTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGCAGTAAGATGCACAATGAGGAAAAAGGGTAGAAAATGACCTG  700

seq1  TACACAGTGGCACATGCTATCATCCCAGCTCCAGGAAAGTCACAAATTCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGGCACATGCTATCATCCCAGCTCCAGGAAAGTCACAAATTCA  750

seq1  AAGCTGGCCAAGGCTACTCATTTTTATATTTTTTGAGATAAGTTTATTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCCAAGGCTACTCATTTTTATATTTTTTGAGATAAGTTTATTTT  800

seq1  TCATTTTTTATTTTATTTTTTTACTTGGTAGCCATAGCTGACTTGAACTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTATTTTATTTTTTTACTTGGTAGCCATAGCTGACTTGAACTT  850

seq1  AAGATTGAATTCTTGAATTC  859
      ||||||||||||||||||||
seq2  AAGATTGAATTCTTGAATTC  870