BAC Information

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BAC

Clone NameB6Ng01-179O14
Chromosome3 (Build37)
Map Location 87,928,561 - 88,125,164
singlet/doubletdoublet
Overlap geneMef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3
Downstream gene0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179O14.bB6Ng01-179O14.g
ACCGA006500GA006501
length1,128520
definitionB6Ng01-179O14.b B6Ng01-179O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,124,058 - 88,125,164)(87,928,561 - 87,929,086)
sequence
gaattccttgggacatctttggggaatacttggcccttccttttagacaa
agctcagaagctggttatctggacagaaacaacatatggtgtcttacctc
tactgctgttttgtacgtttgtagcttcacagccaatggctcccaaatac
ccagctctttcatgtccaccaaggtaccagtctcaccattcacaccccag
gtctcacaactctcctgtgtgtgcttggcctgcaggtggaacatacacaa
gtagggagtacaataaagcttgcttgtgtcagagaatggacaaaaccaaa
ccactaaaaactgacagccaacaaggcagactacaagacttttgaagaaa
cgagctgctgaggaagaacactgaaggctgacctctggcctacactccaa
cccacacccatgcaaatgtgtgcatgaacagaagcatatgtgcgaataat
cacaaactgtcagaaacacagttttttccttaggataaaaccagcttgcc
ttacctcggcaaggcatgagtgtagaaaagaactcacccgaagggaggta
agcagacgaatggtactggccccacaattctggatcaaggtccgagggat
gacctctaacgcctgggccacagctctatatggccattgttccacaccag
tcatggccttagatttttctgtcaaggcatgagccacagccatctcagag
gctccaccaccaggcaccagctgagggtccagtagaacattgcggcacac
ttgcatggcatcctggaggttgcgttctacttccttggggaagcagagaa
atggtgtatagtcagctcagtgattcagagagaaatcagaggcaaaggat
ttcctgactgtcaagcttttagcaaaccacaaaaagagggcaacttagga
agatcccttgtgacctctccctggtagaggggcagaagtgatgttcacat
ttctacctcaggaatggtgagcaacaggaagggggccctgcaagaggttt
aggggattgtcattaccctcaatttaatgagttagggtcttaatgtatta
caccaaaagagaaacaaaattttattctttcccctttctcctagatgtgg
ccacccagcagactgttatggtgtactg
agtgcggatcctttgcaaaggcagccagagtccttaaccactgagccatc
gttccagcacagccagccctcttccagctctggttttttttgttttgttt
tgttttgttttgttttgttttgttttgttttgtttttttaagctggggaa
agatcagggaggcagactcctgtcaggtcaaaggacagcttgtagggatc
aatcctctctaccacatgggtcgcagaaattgaacttaggtcaccagact
tggcagcaagtacttttacctgctgagccacccacccacctcccaggaca
aaaactttattatttatttatttatttatttgattttctgagacagggtt
tctctgtgtagccctggctgtcctggaactcactctgtagaccaggctgg
cctcaaactcataaatccacctgcctctgcctcccaagtgctgggattaa
aggtgtgtgccaccattgcccagcccttaatttttataataatacttttt
ttttccaagatgggctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88124058_88125164
seq2: B6Ng01-179O14.b_47_1174 (reverse)

seq1  CAGTACA-CAT-ACAGTCTGCTGGGTGG-CACAACTAGGAAGGAAGGGAA  47
      ||||||| ||| |||||||||||||||| |||| ||||||   | |||||
seq2  CAGTACACCATAACAGTCTGCTGGGTGGCCACATCTAGGAGAAAGGGGAA  50

seq1  AG-ATAAAA-TTTGTTTCTC-TTTGGTGTAATACATAAAGA-CCTAACTC  93
      || |||||| |||||||||| ||||||||||||||| |||| ||||||||
seq2  AGAATAAAATTTTGTTTCTCTTTTGGTGTAATACATTAAGACCCTAACTC  100

seq1  AT--AATTGAGG--TATGAC-ATCCCCTAACCCTCTTGCAGGGCCCC--T  136
      ||  ||||||||   ||||| ||||||||| ||||||||||||||||  |
seq2  ATTAAATTGAGGGTAATGACAATCCCCTAAACCTCTTGCAGGGCCCCCTT  150

seq1  CCTG-TGCTCA-CATTCCTGAGGTAG-AATGTGAACATCACTTCTGCCCC  183
      |||| |||||| |||||||||||||| |||||||||||||||||||||||
seq2  CCTGTTGCTCACCATTCCTGAGGTAGAAATGTGAACATCACTTCTGCCCC  200

seq1  TCT-CCA-GGAGAGGTCACAA-GGATCTTCCT-AGTTGCCCTCTTTTTGT  229
      ||| ||| ||||||||||||| |||||||||| |||||||||||||||||
seq2  TCTACCAGGGAGAGGTCACAAGGGATCTTCCTAAGTTGCCCTCTTTTTGT  250

seq1  GGTTTGCTAAAAGCTTGACAGTCAGGAAATCCTTTGCCTCTGATTTCTCT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTAAAAGCTTGACAGTCAGGAAATCCTTTGCCTCTGATTTCTCT  300

seq1  CTGAATCACTGAGCTGACTATACACCATTTCTCTGCTTCCCCAAGGAAGT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCACTGAGCTGACTATACACCATTTCTCTGCTTCCCCAAGGAAGT  350

seq1  AGAACGCAACCTCCAGGATGCCATGCAAGTGTGCCGCAATGTTCTACTGG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCAACCTCCAGGATGCCATGCAAGTGTGCCGCAATGTTCTACTGG  400

seq1  ACCCTCAGCTGGTGCCTGGTGGTGGAGCCTCTGAGATGGCTGTGGCTCAT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGCTGGTGCCTGGTGGTGGAGCCTCTGAGATGGCTGTGGCTCAT  450

seq1  GCCTTGACAGAAAAATCTAAGGCCATGACTGGTGTGGAACAATGGCCATA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACAGAAAAATCTAAGGCCATGACTGGTGTGGAACAATGGCCATA  500

seq1  TAGAGCTGTGGCCCAGGCGTTAGAGGTCATCCCTCGGACCTTGATCCAGA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGTGGCCCAGGCGTTAGAGGTCATCCCTCGGACCTTGATCCAGA  550

seq1  ATTGTGGGGCCAGTACCATTCGTCTGCTTACCTCCCTTCGGGTGAGTTCT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGGCCAGTACCATTCGTCTGCTTACCTCCCTTCGGGTGAGTTCT  600

seq1  TTTCTACACTCATGCCTTGCCGAGGTAAGGCAAGCTGGTTTTATCCTAAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACACTCATGCCTTGCCGAGGTAAGGCAAGCTGGTTTTATCCTAAG  650

seq1  GAAAAAACTGTGTTTCTGACAGTTTGTGATTATTCGCACATATGCTTCTG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACTGTGTTTCTGACAGTTTGTGATTATTCGCACATATGCTTCTG  700

seq1  TTCATGCACACATTTGCATGGGTGTGGGTTGGAGTGTAGGCCAGAGGTCA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCACACATTTGCATGGGTGTGGGTTGGAGTGTAGGCCAGAGGTCA  750

seq1  GCCTTCAGTGTTCTTCCTCAGCAGCTCGTTTCTTCAAAAGTCTTGTAGTC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGTGTTCTTCCTCAGCAGCTCGTTTCTTCAAAAGTCTTGTAGTC  800

seq1  TGCCTTGTTGGCTGTCAGTTTTTAGTGGTTTGGTTTTGTCCATTCTCTGA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTGGCTGTCAGTTTTTAGTGGTTTGGTTTTGTCCATTCTCTGA  850

seq1  CACAAGCAAGCTTTATTGTACTCCCTACTTGTGTATGTTCCACCTGCAGG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAAGCTTTATTGTACTCCCTACTTGTGTATGTTCCACCTGCAGG  900

seq1  CCAAGCACACACAGGAGAGTTGTGAGACCTGGGGTGTGAATGGTGAGACT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACACACAGGAGAGTTGTGAGACCTGGGGTGTGAATGGTGAGACT  950

seq1  GGTACCTTGGTGGACATGAAAGAGCTGGGTATTTGGGAGCCATTGGCTGT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTGGTGGACATGAAAGAGCTGGGTATTTGGGAGCCATTGGCTGT  1000

seq1  GAAGCTACAAACGTACAAAACAGCAGTAGAGGTAAGACACCATATGTTGT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACAAACGTACAAAACAGCAGTAGAGGTAAGACACCATATGTTGT  1050

seq1  TTCTGTCCAGATAACCAGCTTCTGAGCTTTGTCTAAAAGGAAGGGCCAAG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCAGATAACCAGCTTCTGAGCTTTGTCTAAAAGGAAGGGCCAAG  1100

seq1  TATTCCCCAAAGATGTCCCAAGGAATTC  1107
      ||||||||||||||||||||||||||||
seq2  TATTCCCCAAAGATGTCCCAAGGAATTC  1128

seq1: chr3_87928561_87929086
seq2: B6Ng01-179O14.g_74_599

seq1  GAATTCAGTGCGGATCCTTTGCAAAGGCAGCCAGAGTCCTTAACCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCGGATCCTTTGCAAAGGCAGCCAGAGTCCTTAACCACTGA  50

seq1  GCCATCGTTCCAGCACAGCCAGCCCTCTTCCAGCTCTGGTTTTTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGTTCCAGCACAGCCAGCCCTCTTCCAGCTCTGGTTTTTTTTGTT  100

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTAAGCT  150

seq1  GGGGAAAGATCAGGGAGGCAGACTCCTGTCAGGTCAAAGGACAGCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGATCAGGGAGGCAGACTCCTGTCAGGTCAAAGGACAGCTTGTA  200

seq1  GGGATCAATCCTCTCTACCACATGGGTCGCAGGAATTGAACTTAGGTCAC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGATCAATCCTCTCTACCACATGGGTCGCAGAAATTGAACTTAGGTCAC  250

seq1  CAGACTTGGCAGCAAGTACTTTTACCTGCTGAGCCACCCACCCACCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGGCAGCAAGTACTTTTACCTGCTGAGCCACCCACCCACCTCCC  300

seq1  AGGACAAAAACTTTATTATTTATTTATTTATTTATTTGATTTTCTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAAACTTTATTATTTATTTATTTATTTATTTGATTTTCTGAGAC  350

seq1  AGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  400

seq1  GGCTAGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTACTGG  450
      |||| |||||||||||| ||||||||||||||||||||||||||| ||||
seq2  GGCTGGCCTCAAACTCATAAATCCACCTGCCTCTGCCTCCCAAGTGCTGG  450

seq1  GATTAAAGGTGTGTGCCACCATTGCCCAGCCCTTAATTTTTATAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGTGCCACCATTGCCCAGCCCTTAATTTTTATAATAATA  500

seq1  CTTTTTTTTTCCAAGATGGGCTTTCT  526
      ||||||||||||||||||||||||||
seq2  CTTTTTTTTTCCAAGATGGGCTTTCT  526