BAC Information

Click to search

BAC

Clone NameB6Ng01-180E20
Chromosome3 (Build37)
Map Location 46,131,190 - 46,132,351
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E20.bB6Ng01-180E20.g
ACCGA006778GA006779
length1,1551,184
definitionB6Ng01-180E20.b B6Ng01-180E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggactaagtcctacttcgtgatgatctgtaattttgcattgg
ttttatttgtttaatcttcaattttgcacttttataaaagaatggtatta
tcagctctttataagatttagacagtattaatatactctatcagatttat
attacaataatttatagtatgttgaaactttctaatttttgaaaactttg
aaaaatttcctgatgaaaattgctagatttgagtctcctttttggttaat
ttgttttgcaatattttttctaggaaaactctgctatttagtaatttcaa
cttctattaattcctactaaattatttcaaatctactttaattatattat
gatatattattgattttttaaatcattctctgttcatatttctttttggt
actgtcccttgttctcttttctgtttctttcatttttaattaataaactc
ttggtatataaagcatatgattttatacataggtttattttaaaatcttt
atagatactaatttattttatgtgttatatttatatttgctttaaacttt
gtacttgttgttttatttttagtttgtgggcctaaaaatataacataaac
tttatctctgtagcttcaggtggaaagacaaatgtaagcatggcttcgct
tttgatccctattcaaagagcacataaaagcaggtacagtgaaactaaca
gaaaagaaactggggaagaatctcgaacacatgggcaataggggaaattt
tcctgaccagaacaccaatagcttatgctctaagatcaaaaattgacaaa
tgggacctcataaaattacaaggctactgtaaggcaaaggacactgtcaa
taggacaaaagggtaaccatcaagtgagaaaagatctttaccaatcctac
atctgatagagggctagtatccaatatatacaaagaactcaagaagttag
tctccagagaagaaaatacccctatttaaaaaataagggtacagagctaa
caaaatattatcaattgaagaatacgaatgagagcattttagaaatgttc
aacatctttagttataggaaatgcaaatcaaaacaaccctggagattcca
caatcatacgtagtcagaatgtctaagatcaaaactcaggtgacatcgca
atgct

gaattcaagacacatgcctaaacatgataaaaagcaatctagagcaaacc
agttgccaacatcaaagtaaatgataagaagctggaatcaatcccactaa
aatcagggactagaccaggctgcccactttctccctacatattcaacatt
gtacttgaaatcctagccagaggaattcaacaacaaaaggagattaaggg
gatacaaattggaaaggaagatcaaaatatcactttttgcagatgatatg
atagtatatataagtgaccctataaattccaccagcgaactcctaaacct
tttaaacagcttcagtaaagtagctggatataaaatgaactcaaacaagt
caatgaagtaaatggcctttctctacagaaaggaaaaacaggctgagaaa
gaaattagggaaacaacaccctcacattagtcacaaataatataaaattc
cttggtgtgacgctaactaaggaggtgaaaaatctatatgatatgaactt
caagtctctgaagaaagaaaataaagaagatctcagaagatggaaagatc
tctcatgctcatggatcggcaggatcaatatagtaaaaatggtctcttgc
caaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaa
tccttcaacaaattagaaagtgcaatctgcaaatttatcttgaataacaa
aaaacctaggatagcaaaaactgttctcaatgataaaagaacctctggtg
gaatcaccatgcctgacctaaagctgtactacagagcaattatgataaaa
acttcatggttctggtatagcgacagacaagtagaccaatggaatagaat
cgaagacccagaaatgaatccacatacctatggtcacttgatctttgaaa
agagtgctgaagacatccagtggaaaagagacagcattttcaacaaatgg
tgctggcacaactggtgattatcatgtagagatgcaaattgatccattcc
tatctccttatataaagactcatataaaacacagactgtaaaactataga
gagaagtgggtaagagcagtgagaatggctcaggaaaaaactctgataga
acagcatagttgtgctgtgggaatctgaattgacaatgatagctataaat
tgccaagctttctggttaaaggcaaaggaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46131190_46132351
seq2: B6Ng01-180E20.b_44_1198

seq1  GAATTCATGGACTAAGTCCTACTTCGTGATGATCTGTAATTTTGCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGACTAAGTCCTACTTCGTGATGATCTGTAATTTTGCATTGG  50

seq1  TTTTATTTGTTTAATCTTCAATTTTGCACTTTTATAAAAGAATGGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGTTTAATCTTCAATTTTGCACTTTTATAAAAGAATGGTATTA  100

seq1  TCAGCTCTTTATAAGATTTAGACAGTATTAATATACTCTATCAGATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTTTATAAGATTTAGACAGTATTAATATACTCTATCAGATTTAT  150

seq1  ATTACAATAATTTATAGTATGTTGAAACTTTCTAATTTTTGAAAACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATAATTTATAGTATGTTGAAACTTTCTAATTTTTGAAAACTTTG  200

seq1  AAAAATTTCCTGATGAAAATTGCTAGATTTGAGTCTCCTTTTTGGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTCCTGATGAAAATTGCTAGATTTGAGTCTCCTTTTTGGTTAAT  250

seq1  TTGTTTTGCAATATTTTTTCTAGGAAAACTCTGCTATTTAGTAATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCAATATTTTTTCTAGGAAAACTCTGCTATTTAGTAATTTCAA  300

seq1  CTTCTATTAATTCCTACTAAATTATTTCAAATCTACTTTAATTATATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTAATTCCTACTAAATTATTTCAAATCTACTTTAATTATATTAT  350

seq1  GATATATTATTGATTTTTTAAATCATTCTCTGTTCATATTTCTTTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTATTGATTTTTTAAATCATTCTCTGTTCATATTTCTTTTTGGT  400

seq1  ACTGTCCCTTGTTCTCTTTTCTGTTTCTTTCATTTTTAATTAATAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTTGTTCTCTTTTCTGTTTCTTTCATTTTTAATTAATAAACTC  450

seq1  TTGGTATATAAAGCATATGATTTTATACATAGGTTTATTTTAAAATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATATAAAGCATATGATTTTATACATAGGTTTATTTTAAAATCTTT  500

seq1  ATAGATACTAATTTATTTTATGTGTTATATTTATATTTGCTTTAAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACTAATTTATTTTATGTGTTATATTTATATTTGCTTTAAACTTT  550

seq1  GTACTTGTTGTTTTATTTTTAGTTTGTGGGCCTAAAAATATAACATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGTTGTTTTATTTTTAGTTTGTGGGCCTAAAAATATAACATAAAC  600

seq1  TTTATCTCTGTAGCTTCAGGTGGAAAGACAAATGTAAGCATGGCTTCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTGTAGCTTCAGGTGGAAAGACAAATGTAAGCATGGCTTCGCT  650

seq1  TTTGATCCCTATTCAAAGAGCACATAAAAGCAGGTACAGTGAAACTAATA  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGATCCCTATTCAAAGAGCACATAAAAGCAGGTACAGTGAAACTAACA  700

seq1  GAAAAGAAACTGGGGAAGAATCTCGAACACATGGGCAATAGGGGAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAACTGGGGAAGAATCTCGAACACATGGGCAATAGGGGAAATTT  750

seq1  TCCTGACCAGAACACCAATAGCTTATGCTCTAAGATCAAAAATTGACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCAGAACACCAATAGCTTATGCTCTAAGATCAAAAATTGACAAA  800

seq1  TGGGACCTCATAAAATTACAAGGCTACTGTAAGGCAAAGGACACTGTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTCATAAAATTACAAGGCTACTGTAAGGCAAAGGACACTGTCAA  850

seq1  TAGGACAAAAGGGTAACCATCAAGTTGAGAAAAGATCTTTACCAATCCTA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGGACAAAAGGGTAACCATCAAG-TGAGAAAAGATCTTTACCAATCCTA  899

seq1  CATCTGATAGAGGGCTAGTATCCAATATATACAAAGAACTCAAGAAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATAGAGGGCTAGTATCCAATATATACAAAGAACTCAAGAAGTTA  949

seq1  GTCTCCAGAGAAGAAAATACCCCTATTTAAAAAATAAGGGTACAGAGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTCCAGAGAAGAAAATACCCCTATTTAAAAAATAAGGGTACAGAGCT-  998

seq1  AACAAAATATTATCAATTGAAGAATAACGAATGAGAAGCATTTTAAGAAA  1050
      ||||||||||||||||||||||||| ||||||||| |||||||| |||||
seq2  AACAAAATATTATCAATTGAAGAAT-ACGAATGAG-AGCATTTT-AGAAA  1045

seq1  TGTTCAACATCTTTAGTTATTAGGGAAATGCAAATCAAAACAACCCT-GA  1099
      ||||||||||||||||||||   |||||||||||||||||||||||| ||
seq2  TGTTCAACATCTTTAGTTAT--AGGAAATGCAAATCAAAACAACCCTGGA  1093

seq1  GATTCCAC-ATCATACCGTAGGTCAGAATGTCTAAGATCAAAAACTCAGG  1148
      |||||||| |||||| |||| |||||||||||||||||| ||||||||||
seq2  GATTCCACAATCATA-CGTA-GTCAGAATGTCTAAGATC-AAAACTCAGG  1140

seq1  TGACAACGC-ATGCT  1162
      ||||| ||| |||||
seq2  TGACATCGCAATGCT  1155


| Home | SequenceCutter | Blast | Download |