BAC Information

Click to search

BAC

Clone NameB6Ng01-180E21
Chromosome3 (Build37)
Map Location 116,276,196 - 116,442,372
singlet/doubletdoublet
Overlap geneLrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3
Upstream geneEdg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705
Downstream geneAgl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E21.bB6Ng01-180E21.g
ACCGA006780GA006781
length1,128213
definitionB6Ng01-180E21.b B6Ng01-180E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,441,242 - 116,442,372)(116,276,196 - 116,276,408)
sequence
gaattctgataatccttaacaaacaagatgtataaaagaaggattgcctt
aacatcagtttgtacttaagaagaagggggaaatcgtaggtatgtttgaa
ggattgctttttgacggcttctgttctgttctgtgttctgcaagtgatca
ctaattaaggcacaatgaaaccattgaatgaatgactccatgggtggaaa
ggtttacttgaatagcaaactgtcacctggagatgatagagactaaccag
aggcattggggggagtccaaagctaccatggccactacctcttgaaggca
gagagaaggcaaagaagagagcagtgtctagctttagattgggagtaatc
tggaagatcctggtggctttgatatgggttacaggtccgtgttattgggt
actaaggaacctggagactagtgtggggctttgctatgccttgcaggtct
gggctaatagggagctagaagatattagcttgtaagaatgacttcatgat
cccttgcagaatacagaacagaacaaaagccaccacaagagcaaggcttc
aggcatacctaggatgtcttccttctctctcacctaacattaagtagaac
tgatgctaagaatcgtttgacggaggtagtgggaaataagagaagtggcc
cttcctggcaggcagaaaactatgtcacaggtgcccaaggaatgctaagt
gtcagtttgtagtttggggtttggggcctaacgatcacaaagtgctgttg
cttttccagccagtgagctcaggacccaggtgtctctgtgtcctcagtgc
tggctttacagacaacaactgctacacctggccttttgtgtcaggacgtg
ctgataccataacaatttatcaatcgctttacaaaccaagccacttcaaa
caagaggcacaggcatcaccatcttttccaccacgtcactgactcgcgtg
taggcagttttctctttccttctggtttctgagattcagaaatcttttct
cacctggagcttcaaaattcttatatagccctctaatctgggtccttaga
gttcccaaagctcgtcctttcagaaactttccagaactaccttaaaatga
aaccactttcagttaatagggtacctgc
atttttattcttgccttgaatgtagaagctggagaaacagcatgacctac
taaatcgagtcacgctgctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtacgcgtacgtgcatacatgtagggcagatgtgctc
aggtgttttccccaatcataacctgctggcctctgttcctgcttgtcagc
tcgggtgtttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116441242_116442372
seq2: B6Ng01-180E21.b_45_1172 (reverse)

seq1  GCAGGTA-CCTATAACCTGAAAGT-GTTTCTTTTTTAAGTAGTTCTGGAA  48
      ||||||| ||||| | |||||||| ||||| |||| | |||||||||| |
seq2  GCAGGTACCCTATTAACTGAAAGTGGTTTCATTTTAAGGTAGTTCTGG-A  49

seq1  AAGTTCCTGGAAAGGACGGGCTTTGGGGACTCTAAGGGACCAGATTTGGG  98
      ||||| || ||||||||| |||||||| |||||||||  ||||||| | |
seq2  AAGTTTCT-GAAAGGACGAGCTTTGGGAACTCTAAGGACCCAGATTAGAG  98

seq1  GGCTATATAAGAATTTTGAAAGCTCCAGTGAAGAAAAGATTTCTGAATCT  148
      |||||||||||||||||| |||||||||   |||||||||||||||||||
seq2  GGCTATATAAGAATTTTG-AAGCTCCAGGTGAGAAAAGATTTCTGAATCT  147

seq1  CAGAAAACCAGAAGGAAAGAGAAAACTGCCTACACGCGAGTCAGTGACGT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-AAACCAGAAGGAAAGAGAAAACTGCCTACACGCGAGTCAGTGACGT  196

seq1  GGTGGAAAAGATGGTGATGCCTGTGCCTCTTGTTTGAAGTGGCTTGGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAAGATGGTGATGCCTGTGCCTCTTGTTTGAAGTGGCTTGGTTT  246

seq1  GTAAAGCGATTGATAAATTGTTTATGGTATCAGCACGTCCTGACACAAAA  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAAAGCGATTGATAAATTG-TTATGGTATCAGCACGTCCTGACACAAAA  295

seq1  GGCCAGGTGTAGCAGTTGTTGTCTGTAAAGCCAGCACTGAGGACACAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTGTAGCAGTTGTTGTCTGTAAAGCCAGCACTGAGGACACAGAG  345

seq1  ACACCTGGGTCCTGAGCTCACTGGCTGGAAAAGCAACAGCACTTTGTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGGTCCTGAGCTCACTGGCTGGAAAAGCAACAGCACTTTGTGAT  395

seq1  CGTTAGGCCCCAAACCCCAAACTACAAACTGACACTTAGCATTCCTTGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGCCCCAAACCCCAAACTACAAACTGACACTTAGCATTCCTTGGG  445

seq1  CACCTGTGACATAGTTTTCTGCCTGCCAGGAAGGGCCACTTCTCTTATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGACATAGTTTTCTGCCTGCCAGGAAGGGCCACTTCTCTTATTT  495

seq1  CCCACTACCTCCGTCAAACGATTCTTAGCATCAGTTCTACTTAATGTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTACCTCCGTCAAACGATTCTTAGCATCAGTTCTACTTAATGTTAG  545

seq1  GTGAGAGAGAAGGAAGACATCCTAGGTATGCCTGAAGCCTTGCTCTTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGAAGGAAGACATCCTAGGTATGCCTGAAGCCTTGCTCTTGTG  595

seq1  GTGGCTTTTGTTCTGTTCTGTATTCTGCAAGGGATCATGAAGTCATTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTTGTTCTGTTCTGTATTCTGCAAGGGATCATGAAGTCATTCTT  645

seq1  ACAAGCTAATATCTTCTAGCTCCCTATTAGCCCAGACCTGCAAGGCATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTAATATCTTCTAGCTCCCTATTAGCCCAGACCTGCAAGGCATAG  695

seq1  CAAAGCCCCACACTAGTCTCCAGGTTCCTTAGTACCCAATAACACGGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCCACACTAGTCTCCAGGTTCCTTAGTACCCAATAACACGGACC  745

seq1  TGTAACCCATATCAAAGCCACCAGGATCTTCCAGATTACTCCCAATCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCATATCAAAGCCACCAGGATCTTCCAGATTACTCCCAATCTAA  795

seq1  AGCTAGACACTGCTCTCTTCTTTGCCTTCTCTCTGCCTTCAAGAGGTAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACACTGCTCTCTTCTTTGCCTTCTCTCTGCCTTCAAGAGGTAGT  845

seq1  GGCCATGGTAGCTTTGGACTCCCCCCAATGCCTCTGGTTAGTCTCTATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGTAGCTTTGGACTCCCCCCAATGCCTCTGGTTAGTCTCTATCA  895

seq1  TCTCCAGGTGACAGTTTGCTATTCAAGTAAACCTTTCCACCCATGGAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTGACAGTTTGCTATTCAAGTAAACCTTTCCACCCATGGAGTC  945

seq1  ATTCATTCAATGGTTTCATTGTGCCTTAATTAGTGATCACTTGCAGAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCAATGGTTTCATTGTGCCTTAATTAGTGATCACTTGCAGAACA  995

seq1  CAGAACAGAACAGAAGCCGTCAAAAAGCAATCCTTCAAACATACCTACGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGAACAGAAGCCGTCAAAAAGCAATCCTTCAAACATACCTACGA  1045

seq1  TTTCCCCCTTCTTCTTAAGTACAAACTGATGTTAAGGCAATCCTTCTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTTCTTCTTAAGTACAAACTGATGTTAAGGCAATCCTTCTTTT  1095

seq1  ATACATCTTGTTTGTTAAGGATTATCAGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  ATACATCTTGTTTGTTAAGGATTATCAGAATTC  1128

seq1: chr3_116276196_116276408
seq2: B6Ng01-180E21.g_72_284

seq1  ATTTTTATTCTTGCCTTGAATGTAGAAGCTGGAGAAACAGCATGACCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTCTTGCCTTGAATGTAGAAGCTGGAGAAACAGCATGACCTAC  50

seq1  TAAATCGAGTCACGCTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGAGTCACGCTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTACACGTACGTACATACATATAGGCCAGATGTGCTC  150
      ||||||||||||||||| ||||||| ||||||| |||| |||||||||||
seq2  TGTGTGTGTGTGTGTACGCGTACGTGCATACATGTAGGGCAGATGTGCTC  150

seq1  AGGTGTTTTCCCCAATCACAAGCTGCTGGCCTCTGTTCCTGCTTGCCAGC  200
      |||||||||||||||||| || ||||||||||||||||||||||| ||||
seq2  AGGTGTTTTCCCCAATCATAACCTGCTGGCCTCTGTTCCTGCTTGTCAGC  200

seq1  ACGGGGGTTTCAG  213
       |||| |||| ||
seq2  TCGGGTGTTTGAG  213