BAC Information

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BAC

Clone NameB6Ng01-180F06
Chromosome3 (Build37)
Map Location 123,916,550 - 123,917,754
singlet/doubletsinglet
Overlap genenone
Upstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333
Downstream geneEG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180F06.bB6Ng01-180F06.g
ACCGA006794GA006795
length1,193960
definitionB6Ng01-180F06.b B6Ng01-180F06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccatattattatgcttttcaattccacttgaaataatttcaaat
ttctctgactcacaaaacaaatttccaaacaacaaagttcattaattcat
aaatgtgcctataacattaaatttattagtggttaatttatatctacata
tactttgtgttcagcaattaaactggttagagtgtcaaaaataacttaaa
gctaaagaaagtaagttatagtctttgatatagctttatagcaaaaattt
acaattttaaagattttaaaatttgcttttacaaagcaatgaattgtcct
ccatcacagacactgcttaatattcatcatacaaacaacgccagactgta
tgtagactctgtgaccaggaggccttcgatcaaccgaatggaaccctagg
caagctccctttctgtccctagagccctgctcttgtacagacctaagaag
ggcaagaaatctaacacagaaactccttcctgtcctgacacttcctcttg
aaatgtaaagtttttgacttatgaatatttctaaaagcctcctgacactg
tgcaatgcatagaaatgttccctaagactccatcactgtcctttgctact
gtgagagaaagtgatagccctctcctagattcaggtggaaccttgagtct
gattgccatggatatctgtaacaaggttcaaaaccacctctcatcataag
caaagaaaatgattatttctttgaatttcttctaccaattaaatataaga
aataagatatgcaaagtgttaggtttagcaccactatgaccaaaattccc
acaggaagaacttttaggaggaaataattaatatggctggtacgttccaa
atgacctgttcactgtgttaagggaagctatggtgggtcagagaaggaaa
ttcacatcatgtcagacatgaagcagaaaaacaataaacaaacaacaaac
aaaacaaacaaacccatctgaatgtagcaggagtctaggtagagacaggg
ccttctggcaaagcaccagtgacctacttctttaagatggctccatttct
catctttcaccactttcatactcttgtggagtgatgaatcgacacgttag
caggtccagttcagagacctcagatctcattgtctgcctaatatatcaga
agatatttgcagtcggcatggctacctctcatatttctcaatc

gaattcatttgcacagggggaaatttcctaaacagaactccaatggctca
tgctctaagatcaagaattgataaatggggcttcatgaaactggaaagct
tctataaggcaaaggacctagtcaatgagacaaatcagtagatttgggaa
aaaacttcactaattctacatccaatagaatgctaatatccaaaatatat
aaagaactcaagaacctagccaccaaaaaaaaaaaaaaagaaagaaagaa
aagaaaagaaaaaacaaacaaacaaacaaacaacccaatcaaaaagtggc
atatagaactaaacagaattcgcaacacagtaatctcaaagggctgagaa
gcacctaaagaaatattaatgccagggccaggaagcagggagtgcgtggg
ttggggagcagggcggagaggggaagggtataggggactttcaggatgtc
atttgaaatgtaaatgaaaatagctaataaaaattgtttttggaaaaaaa
aaagaaatgttcaaagtccttagtgatcagagaaatgcaaatcaaaacta
acctgagattcctccttacaccaatcagaatgactaagatcaaaacctca
ggtaacaacacacgttggcaagaatgtgaagaaagaggaacactcctcca
ttgctggtgggattgcaaactggagcaaccactctggaaatcaatctgga
gattcctcagaaaaatgaaaatagatctacctgaagatacccaataccac
tcttgggaatatacccaaaagatgccccaccatgacacaggggcacatgt
tccactatgttcatagtagctttatttgtgatagaggaacaacccagatt
ttccacaacagaagaatagatatatattctgtggttcctttacataaagg
aatactactcagctatagaacgaggacatcctgagttttgcaggcaattg
gatgaaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123916550_123917754
seq2: B6Ng01-180F06.b_45_1237 (reverse)

seq1  GATTGAGAAATATGTAGAGTTAGCAATGCCGACCTCTGCAAATATC-TCT  49
      |||||||||||||| |||| |||| |||||||   ||||||||||| |||
seq2  GATTGAGAAATATG-AGAGGTAGCCATGCCGA---CTGCAAATATCTTCT  46

seq1  GATAATATTA-GCAGACAATGAGATCCTGAGGTCTCTG-ACTGGA-CTGC  96
      ||| |||||| |||||||||||||| |||||||||||| |||||| ||||
seq2  GAT-ATATTAGGCAGACAATGAGAT-CTGAGGTCTCTGAACTGGACCTGC  94

seq1  TACCGTGTCGGATCATCACTCAAC-AGAGTTATTGAAAGTTGGTGAAAGA  145
      || |||||||  ||||||||| || |||||   |||||| ||||||||||
seq2  TAACGTGTCGATTCATCACTCCACAAGAGT--ATGAAAG-TGGTGAAAGA  141

seq1  TGAGAAATGGAGCCATTCTTTAAAGAAGTAGGTCACTGGTGCTTTTGCCA  195
      ||||||||||||||||   ||||||||||||||||||||||| |||||||
seq2  TGAGAAATGGAGCCAT--CTTAAAGAAGTAGGTCACTGGTGC-TTTGCCA  188

seq1  GAAGGCCCTTGTCTCTACCTAGACTCCTGCTACATTCAGATGGTTTTGTT  245
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGGCCC-TGTCTCTACCTAGACTCCTGCTACATTCAGATGGGTTTGTT  237

seq1  TTGTTTTTGTTTGTTGTTTGTTTATTTGTTTTTCTTGCTTCATGTCTGAC  295
      |   |||||||||||||||||||| ||||||||| |||||||||||||||
seq2  T--GTTTTGTTTGTTGTTTGTTTA-TTGTTTTTC-TGCTTCATGTCTGAC  283

seq1  ATGATGTGAATTTCCTTCTCTGACCCACCATAGCTTCCCTTAACACAGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGAATTTCCTTCTCTGACCCACCATAGCTTCCCTTAACACAGTG  333

seq1  AACAGGTCATTTGGAACGTACCAGCCATATTAATTATTTCCTCCTAAAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCATTTGGAACGTACCAGCCATATTAATTATTTCCTCCTAAAAG  383

seq1  TTCTTCCTGTGGGAATTTTGGTCATAGTGGTGCTAAACCTAACACTTTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGTGGGAATTTTGGTCATAGTGGTGCTAAACCTAACACTTTGC  433

seq1  ATATCTTATTTCTTATATTTAATTGGTAGAAGAAATTCAAAGAAATAATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATTTCTTATATTTAATTGGTAGAAGAAATTCAAAGAAATAATC  483

seq1  ATTTTCTTTGCTTATGATGAGAGGTGGTTTTGAACCTTGTTACAGATATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTGCTTATGATGAGAGGTGGTTTTGAACCTTGTTACAGATATC  533

seq1  CATGGCAATCAGACTCAAGGTTCCACCTGAATCTAGGAGAGGGCTATCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAATCAGACTCAAGGTTCCACCTGAATCTAGGAGAGGGCTATCAC  583

seq1  TTTCTCTCACAGTAGCAAAGGACAGTGATGGAGTCTTAGGGAACATTTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCACAGTAGCAAAGGACAGTGATGGAGTCTTAGGGAACATTTCT  633

seq1  ATGCATTGCACAGTGTCAGGAGGCTTTTAGAAATATTCATAAGTCAAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGCACAGTGTCAGGAGGCTTTTAGAAATATTCATAAGTCAAAAA  683

seq1  CTTTACATTTCAAGAGGAAGTGTCAGGACAGGAAGGAGTTTCTGTGTTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATTTCAAGAGGAAGTGTCAGGACAGGAAGGAGTTTCTGTGTTAG  733

seq1  ATTTCTTGCCCTTCTTAGGTCTGTACAAGAGCAGGGCTCTAGGGACAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGCCCTTCTTAGGTCTGTACAAGAGCAGGGCTCTAGGGACAGAA  783

seq1  AGGGAGCTTGCCTAGGGTTCCATTCGGTTGATCGAAGGCCTCCTGGTCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTTGCCTAGGGTTCCATTCGGTTGATCGAAGGCCTCCTGGTCAC  833

seq1  AGAGTCTACATACAGTCTGGCGTTGTTTGTATGATGAATATTAAGCAGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTACATACAGTCTGGCGTTGTTTGTATGATGAATATTAAGCAGTG  883

seq1  TCTGTGATGGAGGACAATTCATTGCTTTGTAAAAGCAAATTTTAAAATCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGGAGGACAATTCATTGCTTTGTAAAAGCAAATTTTAAAATCT  933

seq1  TTAAAATTGTAAATTTTTGCTATAAAGCTATATCAAAGACTATAACTTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGTAAATTTTTGCTATAAAGCTATATCAAAGACTATAACTTAC  983

seq1  TTTCTTTAGCTTTAAGTTATTTTTGACACTCTAACCAGTTTAATTGCTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGCTTTAAGTTATTTTTGACACTCTAACCAGTTTAATTGCTGA  1033

seq1  ACACAAAGTATATGTAGATATAAATTAACCACTAATAAATTTAATGTTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTATATGTAGATATAAATTAACCACTAATAAATTTAATGTTAT  1083

seq1  AGGCACATTTATGAATTAATGAACTTTGTTGTTTGGAAATTTGTTTTGTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATTTATGAATTAATGAACTTTGTTGTTTGGAAATTTGTTTTGTG  1133

seq1  AGTCAGAGAAATTTGAAATTATTTCAAGTGGAATTGAAAAGCATAATAAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGAAATTTGAAATTATTTCAAGTGGAATTGAAAAGCATAATAAT  1183

seq1  ATGGGAATTC  1205
      ||||||||||
seq2  ATGGGAATTC  1193


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