BAC Information

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BAC

Clone NameB6Ng01-180O19
Chromosome3 (Build37)
Map Location 118,868,115 - 118,978,236
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180O19.bB6Ng01-180O19.g
ACCGA007229GA007230
length9901,092
definitionB6Ng01-180O19.b B6Ng01-180O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,868,115 - 118,869,105)(118,977,158 - 118,978,236)
sequence
gaattcacctatactgaaaatttgagcagatgactgctactccgaataaa
ggaacgtgtttgtatacacacacctgcaacaaattcccctcctaagctgc
cagctgtttccccttagtgggtgtgtctcacactcctagccatcattggt
gtaagatgctagttctaacttgctggagcaacatcccttatgttaaggtt
ttgaaattttgcttcctcccaggacctgcatttttctgtttgttttgtgt
ggatggagatttgaaaaacatttgtagatgagcttataaatggagaaaca
ttttggggctgtagaaaaaggtgtcaaaccacagtggacagcaggattgc
gggctgctactgacctggaaacaggctgtatgcccaaagtattttccttt
agagcatagaactattagcatccttcatagtctttttgcacatatgagtt
ttcaagatgagttcacatgattcacgtaaaatggggtgggggggcgttca
gaaaaaaatattttcagccaattaataagaactgcatgcaacctagctta
aagaaaaggatagacaattcaaagaagcagaattacaaatagccagtaaa
catgaaaaggtattcaccccagctggtcagcatggaaatgcaaattaagc
caacacatatttgaaatctttcagcaactggattggcaaagaatgatggc
tgggtgctgtggagggtgggaagcggcgggcactttcatgttttatcaaa
gggaaagtgaaacaacagtggcagcctttgggagaatatttggcagcatc
taagtaaatatgagggtgagttcttcccagctcaataatttatttcgaag
gaatttgtcctgtcgaaattaaaggaaagcacacgaacacatttgacgtc
agtcggcacacaacttttgtaataactcaaaaaactgaaaaccacttctc
gaaattgttaaggttgtctgaataaattcatctgctcatc
gaattcagttacaatggaagaggggcagatatattatccaccccaccccc
accccactgaaacaccctgcccaattttaagttcaaatttgttcaatttg
tgatcatccaaaggatattttactactgatttttttttcaaattttagct
aaacttttaaaaacatatttttctgactgaattatagtctcatttcagct
aatggtaagatttgtatataaatctataattttctgccacaaaatcacta
tgggtgggaactttatatttttaatgaaattctttgggagccaatgttct
gtagagctttgcaaaaattatttacaacattccctgccacagctgaaaaa
caagagggttttttttttcgattgtgtgaaccattgtattcatgatctga
gttttgctaaagataataaataactcaagcacagttaacacacaatgttt
ctggtctacatcatgtagtcaatacatgcatgggtgaccagtggctatga
tatgacctggtgtgaaaagacacagtgaggcccctccaggaaacccagca
acaggggctgaatgcataagtcattctgtgtcgaaaggagttgaaagggc
accttgtgaagtagaccagagggcatgacagccatgggcagataaaataa
cccacaggataaaaggtaaggagcaagataatagctagaaaattagtggg
caacattttacattcctgaggccaaaacccagccatgttcaaaatatctg
atttctttttgaaaaatctacagccatagtgttcttgctttctgatgctc
taaagtgggctctttttaaaatttaattgaatgtgtatgtatgtgtatgt
gtgcatgtgtacacatgtgtgtgcctgcatgtgtgtgtgtatgccacacc
tgacatatttgtgaggttggaagaccaccttgtgggaagttagttttctt
ccttccgtcaagtgggggtcccaggggatcaaactcagctctgtgaaatg
tgtccacccaagagcccttaccacatgagccatcttgccttttactgcct
tcttccatggagaccagaccagggtaacccttatgagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118868115_118869105
seq2: B6Ng01-180O19.b_45_1034

seq1  GAATTCACCTATACTGAAAATTTGAGCAGATGACTGCTACTCCGAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTATACTGAAAATTTGAGCAGATGACTGCTACTCCGAATAAA  50

seq1  GGAACGTGTTTGTATACACACACCTGCAACAAATTCCCCTCCTAAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGTGTTTGTATACACACACCTGCAACAAATTCCCCTCCTAAGCTGC  100

seq1  CAGCTGTTTCCCCTTAGTGGGTGTGTCTCACACTCCTAGCCATCATTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTCCCCTTAGTGGGTGTGTCTCACACTCCTAGCCATCATTGGT  150

seq1  GTAAGATGCTAGTTCTAACTTGCTGGAGCAACATCCCTTATGTTAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATGCTAGTTCTAACTTGCTGGAGCAACATCCCTTATGTTAAGGTT  200

seq1  TTGAAATTTTGCTTCCTCCCAGGACCTGCATTTTTCTGTTTGTTTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTGCTTCCTCCCAGGACCTGCATTTTTCTGTTTGTTTTGTGT  250

seq1  GGATGGAGATTTGAAAAACATTTGTAGATGAGCTTATAAATGGAGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGATTTGAAAAACATTTGTAGATGAGCTTATAAATGGAGAAACA  300

seq1  TTTTGGGGCTGTAGAAAAAGGTGTCAAACCACAGTGGACAGCAGGATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGCTGTAGAAAAAGGTGTCAAACCACAGTGGACAGCAGGATTGC  350

seq1  GGGCTGCTACTGACCTGGAAACAGGCTGTATGCCCAAAGTATTTTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTACTGACCTGGAAACAGGCTGTATGCCCAAAGTATTTTCCTTT  400

seq1  AGAGCATAGAACTATTAGCATCCTTCATAGTCTTTTTGCACATATGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGAACTATTAGCATCCTTCATAGTCTTTTTGCACATATGAGTT  450

seq1  TTCAAGATGAGTTCACATGATTCACGTAAAATGGGGTGGGGGGGCGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATGAGTTCACATGATTCACGTAAAATGGGGTGGGGGGGCGTTCA  500

seq1  GAAAAAAATATTTTCAGCCAATTAATAAGAACTGCATGCAACCTAGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATATTTTCAGCCAATTAATAAGAACTGCATGCAACCTAGCTTA  550

seq1  AAGAAAAGGATAGACAATTCAAAGAAGCAGAATTACAAATAGCCAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGATAGACAATTCAAAGAAGCAGAATTACAAATAGCCAGTAAA  600

seq1  CATGAAAAGGTATTCACCCCAGCTGGTCAGCATGGAAATGCAAATTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAGGTATTCACCCCAGCTGGTCAGCATGGAAATGCAAATTAAGC  650

seq1  CAACACATATTTGAAATCTTTCAGCAACTGGATTGGCAAAGAATGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATATTTGAAATCTTTCAGCAACTGGATTGGCAAAGAATGATGGC  700

seq1  TGGGTGCTGTGGAGGGTGGGAAGCGGCGGGCACTTTCATGTTTTATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGTGGAGGGTGGGAAGCGGCGGGCACTTTCATGTTTTATCAAA  750

seq1  GGGAAAGTGAAACAACAGTGGCAGCCTTTGGGAGAATATTTGGCAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTGAAACAACAGTGGCAGCCTTTGGGAGAATATTTGGCAGCATC  800

seq1  TAAGTAAATATGAGGGTGAGTTCTTCCCAGCTCAATAATTTATTTCG-AG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAGTAAATATGAGGGTGAGTTCTTCCCAGCTCAATAATTTATTTCGAAG  850

seq1  GAATTTGTTCTGTCGAAATTAAAGG-AAGCACACGAACACATTTGAGGTC  898
      |||||||| |||||||||||||||| |||||||||||||||||||| |||
seq2  GAATTTGTCCTGTCGAAATTAAAGGAAAGCACACGAACACATTTGACGTC  900

seq1  AGTCGGCACAGAACTTTTTGTAATAACTCAAAAAACTGAAAACCAC-TCT  947
      |||||||||| ||| ||||||||||||||||||||||||||||||| |||
seq2  AGTCGGCACACAAC-TTTTGTAATAACTCAAAAAACTGAAAACCACTTCT  949

seq1  CGAAATTGTTTAAGGGCTGTCTGAGTAAATTCTATCTGCCCATC  991
      ||||||||||  | || ||||||| ||||||| |||||| ||||
seq2  CGAAATTGTT--AAGGTTGTCTGAATAAATTC-ATCTGCTCATC  990

seq1: chr3_118977158_118978236
seq2: B6Ng01-180O19.g_68_1159 (reverse)

seq1  TATATCTCAT-AGGGTTA-CCTGGTCTGGTCTCCATGGAAGAAGGCAGT-  47
      ||| |||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  TATTTCTCATAAGGGTTACCCTGGTCTGGTCTCCATGGAAGAAGGCAGTA  50

seq1  AAAGGCAGGATGGCTCATTGTGGTAAAGGCTCTTGG--TGACACATTTCA  95
      ||||||| ||||||||| |||||||| |||||||||   |||||||||||
seq2  AAAGGCAAGATGGCTCA-TGTGGTAAGGGCTCTTGGGTGGACACATTTCA  99

seq1  CAG-GCTGAGTTTGAT-CCCTGG--ACCCCACTTGACGGAAGG-AGAAAA  140
      ||| |||||||||||| ||||||   ||||||||||||||||| ||||||
seq2  CAGAGCTGAGTTTGATCCCCTGGGACCCCCACTTGACGGAAGGAAGAAAA  149

seq1  CTAACTT-CCACAA-GTTGTCTTCCAACCTCACAAATATGTCAGGTGT-G  187
      ||||||| |||||| || |||||||||||||||||||||||||||||| |
seq2  CTAACTTCCCACAAGGTGGTCTTCCAACCTCACAAATATGTCAGGTGTGG  199

seq1  CATACACACACACATGCAGGCACACACATGTGTACACATGCACACATACA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACACACATGCAGGCACACACATGTGTACACATGCACACATACA  249

seq1  CATACATACACATTCAATTAAATTTTAAAAAGAGCCCACTTTAGAGCATC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACATTCAATTAAATTTTAAAAAGAGCCCACTTTAGAGCATC  299

seq1  AGAAAGCAAGAACACTAT-GCTGTAGATTTTTCAAAAAGAAATCAGATAT  336
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAGCAAGAACACTATGGCTGTAGATTTTTCAAAAAGAAATCAGATAT  349

seq1  TTTGAACATGGCTGGGTTTTGGCCTCAGGAATGTAAAATGTTGCCCACTA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATGGCTGGGTTTTGGCCTCAGGAATGTAAAATGTTGCCCACTA  399

seq1  ATTTTCTAGCTATTATCTTGCTCCTTACCTTTTATCCTGTGGGTTATTTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGCTATTATCTTGCTCCTTACCTTTTATCCTGTGGGTTATTTT  449

seq1  ATCTGCCCATGGCTGTCATGCCCTCTGGTCTACTTCACAAGGTGCCCTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCATGGCTGTCATGCCCTCTGGTCTACTTCACAAGGTGCCCTTT  499

seq1  CAACTCCTTTCGACACAGAATGACTTATGCATTCAGCCCCTGTTGCTGGG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTTTCGACACAGAATGACTTATGCATTCAGCCCCTGTTGCTGGG  549

seq1  TTTCCTGGAGGGGCCTCACTGTGTCTTTTCACACCAGGTCATATCATAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGAGGGGCCTCACTGTGTCTTTTCACACCAGGTCATATCATAGC  599

seq1  CACTGGTCACCCATGCATGTATTGACTACATGATGTAGACCAGAAACATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCACCCATGCATGTATTGACTACATGATGTAGACCAGAAACATT  649

seq1  GTGTGTTAACTGTGCTTGAGTTATTTATTATCTTTAGCAAAACTCAGATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTAACTGTGCTTGAGTTATTTATTATCTTTAGCAAAACTCAGATC  699

seq1  ATGAATACAATGGTTCACACAATCGAAAAAAAAAACCCTCTTGTTTTTCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACAATGGTTCACACAATCGAAAAAAAAAACCCTCTTGTTTTTCA  749

seq1  GCTGTGGCAGGGAATGTTGTAAATAATTTTTGCAAAGCTCTACAGAACAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCAGGGAATGTTGTAAATAATTTTTGCAAAGCTCTACAGAACAT  799

seq1  TGGCTCCCAAAGAATTTCATTAAAAATATAAAGTTCCCACCCATAGTGAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCAAAGAATTTCATTAAAAATATAAAGTTCCCACCCATAGTGAT  849

seq1  TTTGTGGCAGAAAATTATAGATTTATATACAAATCTTACCATTAGCTGAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCAGAAAATTATAGATTTATATACAAATCTTACCATTAGCTGAA  899

seq1  ATGAGACTATAATTCAGTCAGAAAAATATGTTTTTAAAAGTTTAGCTAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTATAATTCAGTCAGAAAAATATGTTTTTAAAAGTTTAGCTAAA  949

seq1  ATTTGAAAAAAAAATCAGTAGTAAAATATCCTTTGGATGATCACAAATTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAAAAAATCAGTAGTAAAATATCCTTTGGATGATCACAAATTG  999

seq1  AACAAATTTGAACTTAAAATTGGGCAGGGTGTTTCAGTGGGGTGGGGGTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTTGAACTTAAAATTGGGCAGGGTGTTTCAGTGGGGTGGGGGTG  1049

seq1  GGGTGGATAATATATCTGCCCCTCTTCCATTGTAACTGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGATAATATATCTGCCCCTCTTCCATTGTAACTGAATTC  1092