BAC Information

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BAC

Clone NameB6Ng01-181H20
Chromosome3 (Build37)
Map Location 90,454,288 - 90,581,705
singlet/doubletdoublet
Overlap geneS100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6
Downstream geneLOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181H20.bB6Ng01-181H20.g
ACCGA007637GA007638
length1,205969
definitionB6Ng01-181H20.b B6Ng01-181H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,580,503 - 90,581,705)(90,454,288 - 90,455,021)
sequence
gaattcaaagacctggtgaatgatgatatgccaaattccttcaaggtaat
acttgattaatgagagagggggcttaagtctataacaattagggataaaa
ttcctgcatcttccacatagatgcagcaaaggctctgtcacgggaagtat
gagaattccgtcacagataatcagtagttaatcatctgaattgtgtgaag
ccctgtactgagtagacatgtgtagaggagagcccaaaactgatgatgga
gacacagtattcagaactctgacaagatggtatcttgggagtacggagga
agatgagttaagagtcctgtgggtgatctgtgctgggtgaagcagatgtg
agtgactagagccaattcctactttgaaattgtgacatttaagctgagac
ttcaattctaaaagtaaacaaacatgagaacaatccttgattgtaagctg
agggacattaaacctcagcagggtctcagggtaaacctgaaaaactacca
aagaacatgcagggctttagaccatgtggagaggacccagtacaaaattc
acaatgagaaagcactgccaaatattaggaatttcctatgctcaagaaat
gactagtcagttcttggtaggggtattcattttaaaagattttctattct
caattcaaatgcaagtcaaccaacataatcctggagagaaatgagtaaga
acataagacaagttccattatcagtccattattgaatttagcccagtaag
ctggtatccaggcttcctagaggtccagataaagtggagaaatgccatct
tgggaaatattggagacacagagagctccccatacataaggatctcagga
aaacaaggagctgctttcaggaagacagaaggtaagcaaaaggatcttta
ggcaagtctcccctctctgtgaacaatccattaatttgatcagatttctc
aaatcccaggccaaatcagtgtgatagaacaggaagcactgatcatgaag
atgggctaattgggttaatgggagacgcttagctaagtattccaggcagt
tgagagagactgcagctagctggtacctctcttgctaacatatggatcac
cccactcaccattctaatccctgtccttatcacaaacctttgatgtcaag
caaacctatacatgctctctcctctcagaatcattagctctccttgttta
tggaa
gaattcactaggtagactaggctggcccggaatctcacagagattcatct
tcctttggcctctggagtgctgagattacaggcatgtaccacccctccac
aatatgttttcatattattctgagtcatttatcattcctatgagaaccac
ctgtttggtagattttattgatgagatgatttaggttcttaatatttaat
tttgggttcttaattatcttagatataatctcaatgtctcttcactattt
ggttattcctttgctaggcagaggcctctagattccagacgatctcattt
ctgacttcttgctgttattttctgagctatgagagtccctttgagaatgt
tcttgcctagtgtttcttccatgtgttcctcctgcagcttcaaggtttca
agttttacattaatgtctttggctcattttataactgactgttagaaaag
ataagagatagggacctatctgaatatataaattgcttttggtaggatgg
ccattttcacaatcatcctactataaatccatgagggtgagaggtctttc
catcccctgatatctttttcaaattttctttggtgttttaaacttttcat
tgtacaggtctttcattttcctggctaatttttcttcaagatatttttga
ggccattagtatttagaattattatagaaatgtgtgagccaggcatggtg
gtgcacgcctttaatcccagcactcaaaaggcagaggcaggcgtatttct
gagttccaggccagcctggtctacagagtgagttccaggacagccagggc
tatacagagaaaccctatcttgaaaaacaaacaaacaaacaaacaaacaa
atgtgtgtattaatttctgtcgtttgttaattttatggtcttttctatcc
tagcattgtttatttgtgtttattcttctcctccatactgaagtattcct
tctggaagcctctgtagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90580503_90581705
seq2: B6Ng01-181H20.b_44_1248 (reverse)

seq1  TTCCATAAACAAAGA-AGCATATGATCTTGAGAGGATAGAGCATGGTATA  49
      |||||||||||| || |||  |||||  |||||||| ||||||| |||||
seq2  TTCCATAAACAAGGAGAGCTAATGATTCTGAGAGGAGAGAGCAT-GTATA  49

seq1  GGTTTTGCTGACATCAAA-GTTTGTGATAAAGACAGGGATAGGAATGTGA  98
      |||||   |||||||||| ||||||||||| |||||||||  |||||   
seq2  GGTTTGCTTGACATCAAAGGTTTGTGATAAGGACAGGGATTAGAATGGTG  99

seq1  AGTGGGGTGATCCATATG-TAGC-AGAGA-GTACCAGCTAGCTGCAAGTC  145
      |||||||||||||||||| |||| ||||| ||||||||||||||| ||||
seq2  AGTGGGGTGATCCATATGTTAGCAAGAGAGGTACCAGCTAGCTGC-AGTC  148

seq1  TCCTCCTCACTGCCTGGAATACCTTAGCTAAGGCGTCTCCCATT-ACCCA  194
      | |||   ||||||||||||| ||||||||| |||||||||||| |||||
seq2  T-CTCTCAACTGCCTGGAATA-CTTAGCTAA-GCGTCTCCCATTAACCCA  195

seq1  ATTAGCCCATCTTCATGATCAGTGCTTCCTGTTCTATCACACTGATTTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCATCTTCATGATCAGTGCTTCCTGTTCTATCACACTGATTTGG  245

seq1  CCTGGGATTTGAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATTTGAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGG  295

seq1  GAGACTTGCCTAAAGATCC-TTTGCTTACCTTCTGTCTTCCTGAAAGCAG  343
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGACTTGCCTAAAGATCCTTTTGCTTACCTTCTGTCTTCCTGAAAGCAG  345

seq1  CTCCTTGTTTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTTTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCA  395

seq1  ATATTTCCCAAGATGGCATTTCTCCACTTTATCTGGACCTCTAGGAAGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCCAAGATGGCATTTCTCCACTTTATCTGGACCTCTAGGAAGCC  445

seq1  TGGATACCAGCTTACTGGGCTAAATTCAATAATGGACTGATAATGGAACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCAGCTTACTGGGCTAAATTCAATAATGGACTGATAATGGAACT  495

seq1  TGTCTTATGTTCTTACTCATTTCTCTCCAGGATTATGTTGGTTGACTTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATGTTCTTACTCATTTCTCTCCAGGATTATGTTGGTTGACTTGC  545

seq1  ATTTGAATTGAGAATAGAAAATCTTTTAAAATGAATACCCCTACCAAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTGAGAATAGAAAATCTTTTAAAATGAATACCCCTACCAAGAA  595

seq1  CTGACTAGTCATTTCTTGAGCATAGGAAATTCCTAATATTTGGCAGTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGTCATTTCTTGAGCATAGGAAATTCCTAATATTTGGCAGTGCT  645

seq1  TTCTCATTGTGAATTTTGTACTGGGTCCTCTCCACATGGTCTAAAGCCCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTGTGAATTTTGTACTGGGTCCTCTCCACATGGTCTAAAGCCCT  695

seq1  GCATGTTCTTTGGTAGTTTTTCAGGTTTACCCTGAGACCCTGCTGAGGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCTTTGGTAGTTTTTCAGGTTTACCCTGAGACCCTGCTGAGGTT  745

seq1  TAATGTCCCTCAGCTTACAATCAAGGATTGTTCTCATGTTTGTTTACTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCCTCAGCTTACAATCAAGGATTGTTCTCATGTTTGTTTACTTT  795

seq1  TAGAATTGAAGTCTCAGCTTAAATGTCACAATTTCAAAGTAGGAATTGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGAAGTCTCAGCTTAAATGTCACAATTTCAAAGTAGGAATTGGC  845

seq1  TCTAGTCACTCACATCTGCTTCACCCAGCACAGATCACCCACAGGACTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCACTCACATCTGCTTCACCCAGCACAGATCACCCACAGGACTCT  895

seq1  TAACTCATCTTCCTCCGTACTCCCAAGATACCATCTTGTCAGAGTTCTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATCTTCCTCCGTACTCCCAAGATACCATCTTGTCAGAGTTCTGA  945

seq1  ATACTGTGTCTCCATCATCAGTTTTGGGCTCTCCTCTACACATGTCTACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGTCTCCATCATCAGTTTTGGGCTCTCCTCTACACATGTCTACT  995

seq1  CAGTACAGGGCTTCACACAATTCAGATGATTAACTACTGATTATCTGTGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGCTTCACACAATTCAGATGATTAACTACTGATTATCTGTGA  1045

seq1  CGGAATTCTCATACTTCCCGTGACAGAGCCTTTGCTGCATCTATGTGGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATTCTCATACTTCCCGTGACAGAGCCTTTGCTGCATCTATGTGGAA  1095

seq1  GATGCAGGAATTTTATCCCTAATTGTTATAGACTTAAGCCCCCTCTCTCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGAATTTTATCCCTAATTGTTATAGACTTAAGCCCCCTCTCTCA  1145

seq1  TTAATCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGT  1195

seq1  CTTTGAATTC  1203
      ||||||||||
seq2  CTTTGAATTC  1205

seq1: chr3_90454288_90455021
seq2: B6Ng01-181H20.g_67_800

seq1  GAATTCACTAGGTAGACTAGGCTGGCCCGGAATCTCACAGAGATTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTAGACTAGGCTGGCCCGGAATCTCACAGAGATTCATCT  50

seq1  TCCTTTGGCCTCTGGAGTGCTGAGATTACAGGCATGTACCACCCCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGCCTCTGGAGTGCTGAGATTACAGGCATGTACCACCCCTCCAC  100

seq1  AATATGTTTTCATATTATTCTGAGTCATTTATCATTCCTATGAGAACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTCATATTATTCTGAGTCATTTATCATTCCTATGAGAACCAC  150

seq1  CTGTTTGGTAGATTTTATTGATGAGATGATTTAGGTTCTTAATATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTAGATTTTATTGATGAGATGATTTAGGTTCTTAATATTTAAT  200

seq1  TTTGGGTTCTTAATTATCTTAGATATAATCTCAATGTCTCTTCACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCTTAATTATCTTAGATATAATCTCAATGTCTCTTCACTATTT  250

seq1  GGTTATTCCTTTGCTAGGCAGAGGCCTCTAGATTCCAGACGATCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCCTTTGCTAGGCAGAGGCCTCTAGATTCCAGACGATCTCATTT  300

seq1  CTGACTTCTTGCTGTTATTTTCTGAGCTATGAGAGTCCCTTTGAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTTGCTGTTATTTTCTGAGCTATGAGAGTCCCTTTGAGAATGT  350

seq1  TCTTGCCTAGTGTTTCTTCCATGTGTTCCTCCTGCAGCTTCAAGGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTAGTGTTTCTTCCATGTGTTCCTCCTGCAGCTTCAAGGTTTCA  400

seq1  AGTTTTACATTAATGTCTTTGGCTCATTTTATAACTGACTGTTAGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACATTAATGTCTTTGGCTCATTTTATAACTGACTGTTAGAAAAG  450

seq1  ATAAGAGATAGGGACCTATCTGAATATATAAATTGCTTTTGGTAGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATAGGGACCTATCTGAATATATAAATTGCTTTTGGTAGGATGG  500

seq1  CCATTTTCACAATCATCCTACTATAAATCCATGAGGGTGAGAGGTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCACAATCATCCTACTATAAATCCATGAGGGTGAGAGGTCTTTC  550

seq1  CATCCCCTGATATCTTTTTCAAATTTTCTTTGGTGTTTTAAACTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGATATCTTTTTCAAATTTTCTTTGGTGTTTTAAACTTTTCAT  600

seq1  TGTACAGGTCTTTCATTTTCCTGGCTAATTTTTCTTCAAGATATTTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGTCTTTCATTTTCCTGGCTAATTTTTCTTCAAGATATTTTTGA  650

seq1  GGCCATTAGTATTTAGAATTATTATAGAAATGTGTGAGCCAGGCATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTAGTATTTAGAATTATTATAGAAATGTGTGAGCCAGGCATGGTG  700

seq1  GTGCACGCCTTTAATCCCAGCACTCAAAAGGCAG  734
      ||||||||||||||||||||||||||||||||||
seq2  GTGCACGCCTTTAATCCCAGCACTCAAAAGGCAG  734