BAC Information

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BAC

Clone NameB6Ng01-181J23
Chromosome3 (Build37)
Map Location 41,732,406 - 41,917,064
singlet/doubletdoublet
Overlap geneLOC666031
Upstream gene3110057O12Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
Downstream geneLOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181J23.bB6Ng01-181J23.g
ACCGA007735GA007736
length1,080174
definitionB6Ng01-181J23.b B6Ng01-181J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,915,981 - 41,917,064)(41,732,406 - 41,732,579)
sequence
gaattcctcaactaaatacgcacagagacgcttgttgttattagtggttt
agaggcaggactaaagctggtcctattagatagcaagagaagtggcagag
aaggctaaaggccaaggctttatgaagtcaaagatccggatgggaacagt
tgaactgagatccagatgccgacctgtaaatgctagcttgaactcacctc
tccttaccttcttcattaatttcaattattccattgccagttgtgacctg
cggaggtttggatgacacccacactccatagaaacacctctaatcatgaa
gcatcagagcttaaatcaacccttctgtcagccctaatctacctgcagtc
tcacacctcactctgacccacaaaggtgaaaagggatgtgtgaccacatc
catcactcatgcttagaaatataccaagcacctgaacgagaaggcatttg
cccattggactaactatggcactttcctggttttacagtgtttctgcttt
acagtgtgtgggagctgagcaaattgaaagcacccccagcatatttctaa
ccaagctgctgttgtatcccatcaggcacagagtctttgcaggatcgtaa
ttattattatttgctttcataaaagaccagttcaaaaatcccgaatacta
atttacctcacaagaagtgttctcactgtgtctctactccatccctttcg
ctctttcgaaaccttgcttctgtagctaaggcatgcaataatctcccaga
gtttctggagcaaatctttttctactcgtgtgattgcaaacagaaactct
ttattcaagaaaggaaaaggttattaaaccaagtgaaggtcttgctgcat
taaaatagatagagccgtgacagcagcctgaactgcaaggcaggagctac
atatgggtgcgagccatctgcagcttcagcttggcctgtccagcccagca
tgttgccaggggtaaagcaaaaagtcaacttacaataatctcatgtgcaa
tgcatttgcttatttttttcatatctgcttatgtttggggagattttttt
cctgatgtccaggcttgtttctaatggaat

cctcagtttccttgttggtcttctggtcttgtggcccagatttctggtgg
ctggtgtgattctggtctaagagaaaatttccctgcaagtttgggacttg
gattcgtggggctagtatagcttttggtgtagcagggagtcactgcctga
gttgggggtgggtgggatatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41915981_41917064
seq2: B6Ng01-181J23.b_46_1125 (reverse)

seq1  ATTCCATTTAGAAAACAAGCCTGGACATCAGGAAAAAAATCTCCCCAAAA  50
      |||||| |||| ||||||||||||||||||||||||||||||||||||| 
seq2  ATTCCA-TTAG-AAACAAGCCTGGACATCAGGAAAAAAATCTCCCCAAA-  47

seq1  CAATAAGCAGATATTGAAAAAATAAGCAAATGCATTGCACATGAGATTAT  100
        ||||||||||||  ||||||||||||||||||||||||||||||||| 
seq2  -CATAAGCAGATATGAAAAAAATAAGCAAATGCATTGCACATGAGATTA-  95

seq1  TTGTAAGTTGACTTTTTGCTTTACCCCTGGCAACATGCTGGGCTGGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTTGACTTTTTGCTTTACCCCTGGCAACATGCTGGGCTGGACAG  145

seq1  GCCAAGCTGAAGCTGCAGATGGCTCGCACCCATATGTAGCTCCTGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTGAAGCTGCAGATGGCTCGCACCCATATGTAGCTCCTGCCTTG  195

seq1  CAGTTCAGGCTGCTGTCACGGCTCTATCTATTTTAATGCAGCAAGACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGGCTGCTGTCACGGCTCTATCTATTTTAATGCAGCAAGACCTT  245

seq1  CACTTGGTTTAATAACCTTTTCC-TTCTTGAATAAAGAGTTTCTGTTTGC  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACTTGGTTTAATAACCTTTTCCTTTCTTGAATAAAGAGTTTCTGTTTGC  295

seq1  AATCACACGAGTAGAAAAAGATTTGCTCCAGAAACTCTGGGAGATTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACGAGTAGAAAAAGATTTGCTCCAGAAACTCTGGGAGATTATTG  345

seq1  CATGCCTTAGCTACAGAAGCAAGGTTTCGAAAGAGCGAAAGGGATGGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTAGCTACAGAAGCAAGGTTTCGAAAGAGCGAAAGGGATGGAGT  395

seq1  AGAGACACAGTGAGAACACTTCTTGTGAGGTAAATTAGTATTCGGGATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGTGAGAACACTTCTTGTGAGGTAAATTAGTATTCGGGATTT  445

seq1  TTGAACTGGTCTTTTATGAAAGCAAATAATAATAATTACGATCCTGCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGGTCTTTTATGAAAGCAAATAATAATAATTACGATCCTGCAAA  495

seq1  GACTCTGTGCCTGATGGGATACAACAGCAGCTTGGTTAGAAATATGCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGCCTGATGGGATACAACAGCAGCTTGGTTAGAAATATGCTGG  545

seq1  GGGTGCTTTCAATTTGCTCAGCTCCCACACACTGTAAAGCAGAAACACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTTCAATTTGCTCAGCTCCCACACACTGTAAAGCAGAAACACTG  595

seq1  TAAAACCAGGAAAGTGCCATAGTTAGTCCAATGGGCAAATGCCTTCTCGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGGAAAGTGCCATAGTTAGTCCAATGGGCAAATGCCTTCTCGT  645

seq1  TCAGGTGCTTGGTATATTTCTAAGCATGAGTGATGGATGTGGTCACACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCTTGGTATATTTCTAAGCATGAGTGATGGATGTGGTCACACAT  695

seq1  CCCTTTTCACCTTTGTGGGTCAGAGTGAGGTGTGAGACTGCAGGTAGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCACCTTTGTGGGTCAGAGTGAGGTGTGAGACTGCAGGTAGATT  745

seq1  AGGGCTGACAGAAGGGTTGATTTAAGCTCTGATGCTTCATGATTAGAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGACAGAAGGGTTGATTTAAGCTCTGATGCTTCATGATTAGAGGT  795

seq1  GTTTCTATGGAGTGTGGGTGTCATCCAAACCTCCGCAGGTCACAACTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATGGAGTGTGGGTGTCATCCAAACCTCCGCAGGTCACAACTGGC  845

seq1  AATGGAATAATTGAAATTAATGAAGAAGGTAAGGAGAGGTGAGTTCAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATAATTGAAATTAATGAAGAAGGTAAGGAGAGGTGAGTTCAAGC  895

seq1  TAGCATTTACAGGTCGGCATCTGGATCTCAGTTCAACTGTTCCCATCCGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTACAGGTCGGCATCTGGATCTCAGTTCAACTGTTCCCATCCGG  945

seq1  ATCTTTGACTTCATAAAGCCTTGGCCTTTAGCCTTCTCTGCCACTTCTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGACTTCATAAAGCCTTGGCCTTTAGCCTTCTCTGCCACTTCTCT  995

seq1  TGCTATCTAATAGGACCAGCTTTAGTCCTGCCTCTAAACCACTAATAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCTAATAGGACCAGCTTTAGTCCTGCCTCTAAACCACTAATAACA  1045

seq1  ACAAGCGTCTCTGTGCGTATTTAGTTGAGGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  ACAAGCGTCTCTGTGCGTATTTAGTTGAGGAATTC  1080


seq1: chr3_41732406_41732579
seq2: B6Ng01-181J23.g_70_243

seq1  CCTCAGTTTCCTTGTTGGTCTTCTGGTCTTGTGGCCCAGATTTCTGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCCTTGTTGGTCTTCTGGTCTTGTGGCCCAGATTTCTGGTGG  50

seq1  CTGGTGTGATTCTGGTCTAAGAGAAAATTTCCCTGCAAGTTTGGGACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGATTCTGGTCTAAGAGAAAATTTCCCTGCAAGTTTGGGACTTG  100

seq1  GATTCGTGGGGCTAGTATAGCTTTTGGTGTAGCAGGGAGTCACTGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGTGGGGCTAGTATAGCTTTTGGTGTAGCAGGGAGTCACTGCCTGA  150

seq1  GTTGGGGGTGGGTGGGATATGGTG  174
      ||||||||||||||||||||||||
seq2  GTTGGGGGTGGGTGGGATATGGTG  174


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