BAC Information

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BAC

Clone NameB6Ng01-181L09
Chromosome3 (Build37)
Map Location 6,362,138 - 6,363,313
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
Downstream geneLOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181L09.bB6Ng01-181L09.g
ACCGA007799GA007800
length1,1971,169
definitionB6Ng01-181L09.b B6Ng01-181L09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatctgaggaataccaaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatgactaagatcaaaaattcaggtgacag
cagatgctggagaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactactggaggatccagcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatagatacagaaaatatggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcttagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaacttacacaatatgtactcactgataagtggatattagcccaaaac
ctaggatacccaagatataagatacaatttgctaaacgcatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagaataggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatctagagactgccatatccagggatccaccccataat
cagcttccaaaagctgacaccattgcatacactagcaagattttatcaaa
aggacccatatgtagctgtctcttgtgagactatgccggggtctagcaaa
cacagaagtgggatgctcacagtcagctaattggatggatcacagggctc
ccaatggaggagctagagaaagtagccaaggagcttaaagggatctgcaa
ccctataggtggaacaaaacaacattatggaactaacagtaccccggagc
tctgacctctagctgcaatatgtatcaaaagactgactagtcggccatca
ctgaaagagaggtctatgtacttgctaactgtatactgctccagttacag
ggcaccgtcatggtccaaaagatgtggaatgggggtggtgtatagct
gaattcaatgtcattgctggcccttcatttgactttcctctatgaggctc
acacaagtcactgagttaaaactattgggcaataaaaatcacagacattt
agaagtgttgattttaaatcccatgacatacctatggaacactatatagc
tacttagttaaattttattttttcagagactcagaaattacaggaatttt
attttatttttatatctattgtcatacaactggcacatctggaagattct
gatgaattgaaaagaggaaattttaggttttctccaaagccattctaatt
gtggcaaatagttacttttgataaaactattatctgttgatgccaaattt
ttcagttacttctaaaattctattatgtagtgtttttagcatttagaaat
tttaaataactatcaatggatggataatattttgattttacttaatgata
ttcgaagcatataaaatgcaaaaatgaaatcaatgggtgttgtgaatttg
aaaatagcttgtgatgccaaccctagacatactgaaagatctgctacttt
tgttataaatataatcagtatatgcataacatgcactaaaacctgatctc
cttaactggagacggaaggagaaagataagctgtaactccataaaataat
cttctcatcaacacataaaacagtcaggaattacaaatatccaaaatgac
actatccaaaagcaaatgacagctctagtgtaatcgccacaaccatctct
agttagaagacacaaagactaaagaatgcaaactgaaaatcaggataaga
agatggcaaagtcattatcctctccattagcacatggttaggcttgaggt
gtactggtcacggatagtaagactcctaattagtcagatgatctgagaaa
tgtgagtagactattccgtatgcccctgctgatgcacctgttgtgtttta
catcttccctcctattccctctattctacttccttttatgaatgcctatt
ttgagtgttagaaacattgtcttgctatgtattgtgtattgatttgcaat
aacatgattttgttatttgacattattaggtgcatcccatatgtttgatt
cccaaaacatatctccaagttacagcagcctatcatcacccccctccccc
agcccacactgatgattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6362138_6363313
seq2: B6Ng01-181L09.g_65_1233

seq1  GAATTCAATGTCATTGCTGGCCCTTCATTTGACTTTCCTCTATGAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCATTGCTGGCCCTTCATTTGACTTTCCTCTATGAGGCTC  50

seq1  ACACAAGTCACTGAGTTAAAACTATTGGGCAATAAAAATCACAGACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTCACTGAGTTAAAACTATTGGGCAATAAAAATCACAGACATTT  100

seq1  AGAAGTGTTGATTTTAAATCCCATGACATACCTATGGAACACTATATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTTGATTTTAAATCCCATGACATACCTATGGAACACTATATAGC  150

seq1  TACTTAGTTAAATTTTATTTTTTCAGAGACTCAGAAATTACAGGAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTTAAATTTTATTTTTTCAGAGACTCAGAAATTACAGGAATTTT  200

seq1  ATTTTATTTTTATATCTATTGTCATACAACTGGCACATCTGGAAGATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTATATCTATTGTCATACAACTGGCACATCTGGAAGATTCT  250

seq1  GATGAATTGAAAAGAGGAAATTTTAGGTTTTCTCCAAAGCCATTCTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTGAAAAGAGGAAATTTTAGGTTTTCTCCAAAGCCATTCTAATT  300

seq1  GTGGCAAATAGTTACTTTTGATAAAACTATTATCTGTTGATGCCAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAATAGTTACTTTTGATAAAACTATTATCTGTTGATGCCAAATTT  350

seq1  TTCAGTTACTTCTAAAATTCTATTATGTAGTGTTTTTAGCATTTAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTACTTCTAAAATTCTATTATGTAGTGTTTTTAGCATTTAGAAAT  400

seq1  TTTAAATAACTATCAATGGATGGATAATATTTTGATTTTACTTAATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAACTATCAATGGATGGATAATATTTTGATTTTACTTAATGATA  450

seq1  TTCGAAGCATATAAAATGCAAAAATGAAATCAATGGGTGTTGTGAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGCATATAAAATGCAAAAATGAAATCAATGGGTGTTGTGAATTTG  500

seq1  AAAATAGCTTGTGATGCCAACCCTAGACATACTGAAAGATCTGCTACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTTGTGATGCCAACCCTAGACATACTGAAAGATCTGCTACTTT  550

seq1  TGTTATAAATATAATCAGTATATGCATAACATGCACTAAAACCTGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAATATAATCAGTATATGCATAACATGCACTAAAACCTGATCTC  600

seq1  CTTAACTGGAGACGGAAGGAGAAAGATAAGCTGTAACTCCATAAAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGGAGACGGAAGGAGAAAGATAAGCTGTAACTCCATAAAATAAT  650

seq1  CTTCTCATCAACACATAAAACAGTCAGGAATTACAAATATCCAAAATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATCAACACATAAAACAGTCAGGAATTACAAATATCCAAAATGAC  700

seq1  ACTATCCAAAAGCAAATGACAGCTCTAGTGTAATCGCCACAACCATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAAAAGCAAATGACAGCTCTAGTGTAATCGCCACAACCATCTCT  750

seq1  AGTTAGAAGACACAAAGACTAAAGAATGCAAACTGAAAATCAGGATAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGACACAAAGACTAAAGAATGCAAACTGAAAATCAGGATAAGA  800

seq1  AGATGGCAAAGTCATTATCCTCTCCATTAGCACATGGTTAGGCTTGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAAGTCATTATCCTCTCCATTAGCACATGGTTAGGCTTGAGGT  850

seq1  GTACTGGTCACGGATAGTAAGACTCCTAATTAGTCAGATGATCTGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTCACGGATAGTAAGACTCCTAATTAGTCAGATGATCTGAGAAA  900

seq1  TGTGAGTAGACTATT-CGTATGCCCCTGCTGATGCACTTGTTTGTGTTTT  949
      ||||||||||||||| ||||||||||||||||||||| || |||||||||
seq2  TGTGAGTAGACTATTCCGTATGCCCCTGCTGATGCACCTG-TTGTGTTTT  949

seq1  ACATCTTCCCT-CTATT-CCTCTATTCTACTTCCTTTTATGAATG-CTAT  996
      ||||||||||| ||||| ||||||||||||||||||||||||||| ||||
seq2  ACATCTTCCCTCCTATTCCCTCTATTCTACTTCCTTTTATGAATGCCTAT  999

seq1  TTTGAGTGTATAGAAACA-TGTCTTGCTATGTTAATTGTGTATTGATTTG  1045
      ||||||||| |||||||| |||||||||||||  ||||||||||||||||
seq2  TTTGAGTGT-TAGAAACATTGTCTTGCTATGT--ATTGTGTATTGATTTG  1046

seq1  CAAATTAACATTGATTTTGTTATTTGACAATTTAATA-GTGCATCCAATA  1094
      |||  ||||| ||||||||||||||||||  ||| || |||||||| |||
seq2  CAA--TAACA-TGATTTTGTTATTTGACA--TTATTAGGTGCATCCCATA  1091

seq1  TGTTTTGATTCCCCAAAACTATCTCCTATAGTTACAGCAGCCCTATCATC  1144
      || |||||||||| |||  |||||||   ||||||||||| |||||||||
seq2  TG-TTTGATTCCCAAAACATATCTCC--AAGTTACAGCAG-CCTATCATC  1137

seq1  A--CCCCTCCCCCAGCCCCACACTGGTTGATTCC  1176
      |  |||||||||||| |||||||| | |||||||
seq2  ACCCCCCTCCCCCAG-CCCACACT-GATGATTCC  1169