BAC Information

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BAC

Clone NameB6Ng01-182K17
Chromosome3 (Build37)
Map Location 89,221,797 - 89,375,445
singlet/doubletdoublet
Overlap geneCks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Upstream geneSlc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182K17.bB6Ng01-182K17.g
ACCGA008499GA008500
length1,2031,078
definitionB6Ng01-182K17.b B6Ng01-182K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,374,224 - 89,375,445)(89,221,797 - 89,222,862)
sequence
gaattccaccctcaggactgcctatggtgtatctgcagaaaggacggaca
gcctctagctcccatggaagaaaggcataacttcttcctcctcttcttgt
gtaattccagaccagctctgtctcttacacataaggtccctgctccaagt
gattccagcgcccaggttcacctccctaggaaactgacctaccccctcta
ggagacatgccccactgcttcttccttcctgacacgtggactcatgcctc
ctcttatggtgcttaagacgatgggtcagctggctcaaggtggtggtcaa
tcacatcccagaggcaggagtgtagaatgagctctgagcgttaagtaaat
agatgggcattctggctcagtgttataaatcacatgtgggtaaactcgct
aatttagagacatcagttcagaacgcagctgtcacacccttcctcttaag
gccaggtcaccttctaagttcagaatgtgatttgagttcacttctctcta
ggaagagggaggcaaagagaaagactggactgtctgcctgtcccctgatg
agaagatgccactaacctatttagcaaaaggaccccaaagagtctgcacc
agcgacacctcctgtatcacaggcatcgtgtcttggtgacagtacattgt
gatcacccaggaggctgcttggatctcctggacaacagcaccacagtggg
tgagctgtttacaaatgtgagctgtctcttgactataatttatggcctat
aattttaaacaagttccttgacttctgaaaaccctattggtatttaataa
aaaatatccacttttatatacctaataaatgaaaatctccagtttgggtc
ccttgggttccaaactcataaagttgaagactcatatcttatcactatcg
ttatgtttctgtcacattagaggaaactaaagaagtgtgcagaggcttcc
gtgagatccagacagggagtagatagccctgtccccctgagtcagctaat
gaaatacacagttgtactgatggtgcttgcagcttctctccaaggcttcg
tgatgtgaattttctctgctgtccacacccaagccttagcagccacctcc
tccttggggctctctaccctcctctcttgcagctctgatcgaaaggttaa
ccctggtcccttccatcactgattcttgctggtagcccaccacacatcta
tgt
gaattcccagaggtaaaactgatcagagctacaagacgcttcaatttaac
agccggccaactctaagttccctttcattgttttacatcctccgtccacc
ttttgcgcatgtgctttgctgctgtacccaatcccacccccaccccactc
cccggtaattccttgcgcacgcgcccgttctacactgtcccccgccccca
tcccccgcctcccactccggcctaggtaactaactcctcgcgtgctctct
tttgtctgtagtccccgcgccggcactaaccggtattcgaactcctcgtc
gtcgtatttgtccgaatagtagatttgtttgtgggacatgattgctctgt
ccgagggcgctcagccccgcgccgcaggcctccagacaactcccagcagc
acgcgctcccaccctctttggcctcgctttcaaacacaccgcccgcactt
cctattggtctctgcggccgaaggcgggacagctccattttgaagtcctc
gattggcttgctttggcgtctcttcaagtcgtaaatggagtgctgtgctc
aggtttctgaagaatgagctgggtcaaactaggattctcattggctctca
ctgcgccccttgagcctgctggcgcagccattggccaactttggaaagca
gacgggtaaaggagggacagcgaggtagggggtcaggggttagtgaggcc
ggaagtgagtgtaataaagtttgtctggggaggcccaggctggggtgaaa
gttggggcggtgacttaagcagacagttgcgtgatccggaaccagatcgg
cccgcgggtgcgggtgcggagactccatgagacccttggtaagtctagac
tttctttctgtgggcgaccaactcctcttccacccctggaaccccttctc
ccaggaccctacttccggttcttgctgtttagtcccgcccccgagaccct
ctccggaagtccaccttcctactttcaagggctcccttgaacccgaactt
gtctcttatgatcgcgacaccacctgagtggttcttactttcctgtggca
tccgcaccccatagaacggtgtttccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89374224_89375445
seq2: B6Ng01-182K17.b_48_1250 (reverse)

seq1  ACATAGACTGT-TGGTGGGCTACCAGCAAGGAGCCAGCTGAAAGGGAGAG  49
      ||||||| ||| ||||||||||||||||| ||  ||| ||  | ||| ||
seq2  ACATAGA-TGTGTGGTGGGCTACCAGCAA-GAATCAG-TG--ATGGA-AG  44

seq1  GGAAAACCAGGGGTTTACCTTCTGATCCAGGAGCCTGCAAGAGAGGAAGG  99
      ||   |||| ||||| |||||  ||||   ||| |||||||||||| |||
seq2  GG---ACCA-GGGTTAACCTTTCGATC--AGAG-CTGCAAGAGAGG-AGG  86

seq1  GTAGAGAGCCCCAGGGAGGAGGTGCTGGCTTAGGCTTGGGGTGTGGACAG  149
      ||||||||||||| ||||||||||   ||| |||||| ||||||||||||
seq2  GTAGAGAGCCCCAAGGAGGAGGTGGCTGCTAAGGCTT-GGGTGTGGACAG  135

seq1  CAGAGAGAATTCACATCACGAAGCCCCTGGAGAGAAGCTGCAAGCACCAT  199
      |||||| |||||||||||||||| || |||||||||||||||||||||||
seq2  CAGAGAAAATTCACATCACGAAG-CCTTGGAGAGAAGCTGCAAGCACCAT  184

seq1  CAGTTACAACTTGTGTTATTTCATTAGCTGACTCAGGGGGACAGGGCTTA  249
      ||| |||||| |||| ||||||||||||||||||||||||||||||| ||
seq2  CAG-TACAAC-TGTG-TATTTCATTAGCTGACTCAGGGGGACAGGGC-TA  230

seq1  TCTACTCCCTGTCTGGATCTCACGGAAGCCTCTGCACACTTCTTTAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCCTGTCTGGATCTCACGGAAGCCTCTGCACACTTCTTTAGTTT  280

seq1  CCTCTAATGTGACAGAAACATAACGATAGTGATAAGATATGAGTCTTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATGTGACAGAAACATAACGATAGTGATAAGATATGAGTCTTCAA  330

seq1  CTTTATGAGTTTGGAACCCAAGGGACCCAAACTGGAGATTTTCATTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAGTTTGGAACCCAAGGGACCCAAACTGGAGATTTTCATTTATT  380

seq1  AGGTATATAAAAGTGGATATTTTTTATTAAATACCAATAGGGTTTTCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATAAAAGTGGATATTTTTTATTAAATACCAATAGGGTTTTCAGA  430

seq1  AGTCAAGGAACTTGTTTAAAATTATAGGCCATAAATTATAGTCAAGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGAACTTGTTTAAAATTATAGGCCATAAATTATAGTCAAGAGAC  480

seq1  AGCTCACATTTGTAAACAGCTCACCCACTGTGGTGCTGTTGTCCAGGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACATTTGTAAACAGCTCACCCACTGTGGTGCTGTTGTCCAGGAGA  530

seq1  TCCAAGCAGCCTCCTGGGTGATCACAATGTACTGTCACCAAGACACGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAGCCTCCTGGGTGATCACAATGTACTGTCACCAAGACACGATG  580

seq1  CCTGTGATACAGGAGGTGTCGCTGGTGCAGACTCTTTGGGGTCCTTTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATACAGGAGGTGTCGCTGGTGCAGACTCTTTGGGGTCCTTTTGC  630

seq1  TAAATAGGTTAGTGGCATCTTCTCATCAGGGGACAGGCAGACAGTCCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGTTAGTGGCATCTTCTCATCAGGGGACAGGCAGACAGTCCAGT  680

seq1  CTTTCTCTTTGCCTCCCTCTTCCTAGAGAGAAGTGAACTCAAATCACATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTGCCTCCCTCTTCCTAGAGAGAAGTGAACTCAAATCACATT  730

seq1  CTGAACTTAGAAGGTGACCTGGCCTTAAGAGGAAGGGTGTGACAGCTGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTAGAAGGTGACCTGGCCTTAAGAGGAAGGGTGTGACAGCTGCG  780

seq1  TTCTGAACTGATGTCTCTAAATTAGCGAGTTTACCCACATGTGATTTATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTGATGTCTCTAAATTAGCGAGTTTACCCACATGTGATTTATA  830

seq1  ACACTGAGCCAGAATGCCCATCTATTTACTTAACGCTCAGAGCTCATTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGCCAGAATGCCCATCTATTTACTTAACGCTCAGAGCTCATTCT  880

seq1  ACACTCCTGCCTCTGGGATGTGATTGACCACCACCTTGAGCCAGCTGACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTGCCTCTGGGATGTGATTGACCACCACCTTGAGCCAGCTGACC  930

seq1  CATCGTCTTAAGCACCATAAGAGGAGGCATGAGTCCACGTGTCAGGAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTCTTAAGCACCATAAGAGGAGGCATGAGTCCACGTGTCAGGAAGG  980

seq1  AAGAAGCAGTGGGGCATGTCTCCTAGAGGGGGTAGGTCAGTTTCCTAGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAGTGGGGCATGTCTCCTAGAGGGGGTAGGTCAGTTTCCTAGGG  1030

seq1  AGGTGAACCTGGGCGCTGGAATCACTTGGAGCAGGGACCTTATGTGTAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACCTGGGCGCTGGAATCACTTGGAGCAGGGACCTTATGTGTAAG  1080

seq1  AGACAGAGCTGGTCTGGAATTACACAAGAAGAGGAGGAAGAAGTTATGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCTGGTCTGGAATTACACAAGAAGAGGAGGAAGAAGTTATGCC  1130

seq1  TTTCTTCCATGGGAGCTAGAGGCTGTCCGTCCTTTCTGCAGATACACCAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCATGGGAGCTAGAGGCTGTCCGTCCTTTCTGCAGATACACCAT  1180

seq1  AGGCAGTCCTGAGGGTGGAATTC  1222
      |||||||||||||||||||||||
seq2  AGGCAGTCCTGAGGGTGGAATTC  1203

seq1: chr3_89221797_89222862
seq2: B6Ng01-182K17.g_66_1143

seq1  GAATTCCCAGAGGTAAAACTGATCAGAGCTACAAGACGCTTCAATTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAGGTAAAACTGATCAGAGCTACAAGACGCTTCAATTTAAC  50

seq1  AGCCGGCCAACTCTAAGTTCCCTTTCATTGTTTTACATCCTCCGTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGCCAACTCTAAGTTCCCTTTCATTGTTTTACATCCTCCGTCCACC  100

seq1  TTTTGCGCATGTGCTTTGCTGCTGTACCCAATCCCACCCCCACCCCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGCATGTGCTTTGCTGCTGTACCCAATCCCACCCCCACCCCACTC  150

seq1  CCCGGTAATTCCTTGCGCACGCGCCCGTTCTACACTGTCCCCCGCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTAATTCCTTGCGCACGCGCCCGTTCTACACTGTCCCCCGCCCCCA  200

seq1  TCCCCCGCCTCCCACTCCGGCCTAGGTAACTAACTCCTCGCGTGCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGCCTCCCACTCCGGCCTAGGTAACTAACTCCTCGCGTGCTCTCT  250

seq1  TTTGTCTGTAGTCCCCGCGCCGGCACTAACCGGTATTCGAACTCCTCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTAGTCCCCGCGCCGGCACTAACCGGTATTCGAACTCCTCGTC  300

seq1  GTCGTATTTGTCCGAATAGTAGATTTGTTTGTGGGACATGATTGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATTTGTCCGAATAGTAGATTTGTTTGTGGGACATGATTGCTCTGT  350

seq1  CCGAGGGCGCTCAGCCCCGCGCCGCAGGCCTCCAGACAACTCCCAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGCGCTCAGCCCCGCGCCGCAGGCCTCCAGACAACTCCCAGCAGC  400

seq1  ACGCGCTCCCACCCTCTTTGGCCTCGCTTTCAAACACACCGCCCGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCTCCCACCCTCTTTGGCCTCGCTTTCAAACACACCGCCCGCACTT  450

seq1  CCTATTGGTCTCTGCGGCCGAAGGCGGGACAGCTCCATTTTGAAGTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGTCTCTGCGGCCGAAGGCGGGACAGCTCCATTTTGAAGTCCTC  500

seq1  GATTGGCTTGCTTTGGCGTCTCTTCAAGTCGTAAATGGAGTGCTGTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTTGCTTTGGCGTCTCTTCAAGTCGTAAATGGAGTGCTGTGCTC  550

seq1  AGGTTTCTGAAGAATGAGCTGGGTCAAACTAGGATTCTCATTGGCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGAAGAATGAGCTGGGTCAAACTAGGATTCTCATTGGCTCTCA  600

seq1  CTGCGCCCCTTGAGCCTGCTGGCGCAGCCATTGGCCAACTTTGGAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCCCTTGAGCCTGCTGGCGCAGCCATTGGCCAACTTTGGAAAGCA  650

seq1  GACGGGTAAAGGAGGGACAGCGAGGTAGGGGGTCAGGGGTTAGTGAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGTAAAGGAGGGACAGCGAGGTAGGGGGTCAGGGGTTAGTGAGGCC  700

seq1  GGAAGTGAGTGTAATAAAGTTTGTCTGGGGAGGCCCAGGCTGGGGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGTGTAATAAAGTTTGTCTGGGGAGGCCCAGGCTGGGGTGAAA  750

seq1  GTTGGGGCGGTGACTTAAGCAGACAGTTGCGTGATCCGGAACCAGATCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGCGGTGACTTAAGCAGACAGTTGCGTGATCCGGAACCAGATCGG  800

seq1  CCCGC-GGTGC-GGTGCGGAGACTCCATGAGACCC-TGGTAAGTCTAGAC  847
      ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CCCGCGGGTGCGGGTGCGGAGACTCCATGAGACCCTTGGTAAGTCTAGAC  850

seq1  TTTCTTTCTGT-GGCGACCAACTCCTCTTCCACCCC-GGAACCCC-TCTC  894
      ||||||||||| |||||||||||||||||||||||| |||||||| ||||
seq2  TTTCTTTCTGTGGGCGACCAACTCCTCTTCCACCCCTGGAACCCCTTCTC  900

seq1  CCAGGACCCTACTTCCGG-TCTTGCTGTATAAGTCCCGCCCCCGAGACCC  943
      |||||||||||||||||| ||||||||| | |||||||||||||||| ||
seq2  CCAGGACCCTACTTCCGGTTCTTGCTGT-TTAGTCCCGCCCCCGAGA-CC  948

seq1  CTCTCCGGAAGTCCCACCTTCCTACTTCAAGGGGCTCCC-TGAACCCCGA  992
      |||||||||||| ||||||||||||||  | |||||||| |||||||  |
seq2  CTCTCCGGAAGT-CCACCTTCCTACTTTCAAGGGCTCCCTTGAACCCGAA  997

seq1  CTTGTCTCTTATGATCGCGACCACACC-CTGTGG-TCTTACTTTCCTG-G  1039
      |||||||||||||||||||||  ||||   |||| ||||||||||||| |
seq2  CTTGTCTCTTATGATCGCGACACCACCTGAGTGGTTCTTACTTTCCTGTG  1047

seq1  GAAT-CGCACCCC-CAGA--CGTGTTTCCCA  1066
      | || ||||||||  |||   ||||||||||
seq2  GCATCCGCACCCCATAGAACGGTGTTTCCCA  1078