BAC Information

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BAC

Clone NameB6Ng01-183D10
Chromosome3 (Build37)
Map Location 41,006,531 - 41,176,827
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183D10.bB6Ng01-183D10.g
ACCGA008902GA008903
length965874
definitionB6Ng01-183D10.b B6Ng01-183D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,176,056 - 41,176,827)(41,006,531 - 41,007,404)
sequence
gaattcaattccacgcttgagattctaaaatacagaagacgaggaatggg
agaaagatcctagcatttgatttcactgctgtcgtaattattttatttga
gaaggactcttaccacgttgccaggctgccttcccacatcagccccctga
gtcctggcatcacagacatcagcctctgcactcagcatttacacatctct
tttggaaagaaagttcaagaattgtgtgagcagtgaatggctgagccagg
tgcattgccacctccagagagggtgcagtcaagtaggacataaatatggt
agaaagaatgatatatttttagagggaagcacaaagcaaaggaaaacaaa
tcagttagaaaaaaagatgagtgggatcaaggaatgccacagaagatgag
atgcttaagctgagccttgggggcacagagagtttactaggataggggaa
ggatgtggtcctgagaacagcatggagaaaagagagttgggatgaaactg
cgtgaccatgtcagtgggtaccaggaagcataccatagaccacactcagg
agggattcttcattgctattgtgtcttagttagggttttactcctgtgag
cagacaccatgaccaaagcaagtcttataaaggacagcatctaattggga
ctggcttacaggttcagagattcagagtccaggtgggagcatggcaggct
ataggcaggcatggtgcaggcagagttgagagttctacatcttcatctga
aggctgctagtggaagactggcttccaggtagctaggatgagggtattaa
agtccacacccacagtgacacactccaacaaggccacacttactccaacg
gggccacactttcaaatagtgccaagcatatacaaaccataacatgttga
atgaagtacttttgagacagtgtcttttgtacccaagactggtcttgaac
ttcggatccttttga
gaattcctttctaggatttagtagtcagcacccacttgcctaaataaata
aaaacagcatcaaaaacacaaggcagacactgtttaacaaaccaggattt
tccaaatgtttccaaatgttctggcgatatttcgatcagctggagatggc
ccagctaagacttcttaggaattaaaaaaaaaaaaagtaattaaaactat
ccaggccctagtgaccctttcccaataattcacttatggtttatacttgg
agatgtatataatatcacattacttaagtgtgggaggggttaggcaagag
tgtcaggttccgctgtgggcatccgtcgtccggatggctctgactttctc
ccaggcagcagttgatattttatagccttgtaattcagttgactgtcact
cagttcacacgtggagcaccagtgacatagatatacacagacaccaaatg
tgctaattacaaaggcagcgcaggtgggaggccctggttacaacccctgt
ataacaacagtggcagattgcgaagagagggccgttcatcatccgataac
atcaaggctcgcagggtagaatgttctgggctgagtttacagagctccgc
agctttgcccccttcgagactctccagcgatggggcactggttgtttggt
ggaatggtggcaggaagaaaagatagccatgggtgggtagggtgaagggg
gtttcagagacggaagagctatttgccccggtcgagctgagtcactgtga
taatttggttttacttttagaagtgacactctgacgtagcagtcagaatt
acttttcattaatttttaaattatatttttacatttaaatttttttcatc
tatatatgtatgtgagtgtagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41176056_41176827
seq2: B6Ng01-183D10.b_45_816 (reverse)

seq1  GCCAGTCTTCCACTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTTCCACTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAACTC  50

seq1  TGCCTGCACCATGCCTGCCTATAGCCTGCCATGCTCCCACCTGGACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCACCATGCCTGCCTATAGCCTGCCATGCTCCCACCTGGACTCTG  100

seq1  AATCTCTGAACCTGTAAGCCAGTCCCAATTAGATGCTGTCCTTTATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGAACCTGTAAGCCAGTCCCAATTAGATGCTGTCCTTTATAAGA  150

seq1  CTTGCTTTGGTCATGGTGTCTGCTCACAGGAGTAAAACCCTAACTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTGGTCATGGTGTCTGCTCACAGGAGTAAAACCCTAACTAAGAC  200

seq1  ACAATAGCAATGAAGAATCCCTCCTGAGTGTGGTCTATGGTATGCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCAATGAAGAATCCCTCCTGAGTGTGGTCTATGGTATGCTTCCT  250

seq1  GGTACCCACTGACATGGTCACGCAGTTTCATCCCAACTCTCTTTTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCACTGACATGGTCACGCAGTTTCATCCCAACTCTCTTTTCTCCA  300

seq1  TGCTGTTCTCAGGACCACATCCTTCCCCTATCCTAGTAAACTCTCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTCAGGACCACATCCTTCCCCTATCCTAGTAAACTCTCTGTGC  350

seq1  CCCCAAGGCTCAGCTTAAGCATCTCATCTTCTGTGGCATTCCTTGATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGCTCAGCTTAAGCATCTCATCTTCTGTGGCATTCCTTGATCCC  400

seq1  ACTCATCTTTTTTTCTAACTGATTTGTTTTCCTTTGCTTTGTGCTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTTTTTTTCTAACTGATTTGTTTTCCTTTGCTTTGTGCTTCCCT  450

seq1  CTAAAAATATATCATTCTTTCTACCATATTTATGTCCTACTTGACTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATATCATTCTTTCTACCATATTTATGTCCTACTTGACTGCAC  500

seq1  CCTCTCTGGAGGTGGCAATGCACCTGGCTCAGCCATTCACTGCTCACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGGAGGTGGCAATGCACCTGGCTCAGCCATTCACTGCTCACACA  550

seq1  ATTCTTGAACTTTCTTTCCAAAAGAGATGTGTAAATGCTGAGTGCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAACTTTCTTTCCAAAAGAGATGTGTAAATGCTGAGTGCAGAGG  600

seq1  CTGATGTCTGTGATGCCAGGACTCAGGGGGCTGATGTGGGAAGGCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCTGTGATGCCAGGACTCAGGGGGCTGATGTGGGAAGGCAGCCT  650

seq1  GGCAACGTGGTAAGAGTCCTTCTCAAATAAAATAATTACGACAGCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGTGGTAAGAGTCCTTCTCAAATAAAATAATTACGACAGCAGTGA  700

seq1  AATCAAATGCTAGGATCTTTCTCCCATTCCTCGTCTTCTGTATTTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATGCTAGGATCTTTCTCCCATTCCTCGTCTTCTGTATTTTAGAA  750

seq1  TCTCAAGCGTGGAATTGAATTC  772
      ||||||||||||||||||||||
seq2  TCTCAAGCGTGGAATTGAATTC  772

seq1: chr3_41006531_41007404
seq2: B6Ng01-183D10.g_69_942

seq1  GAATTCCTTTCTAGGATTTAGTAGTCAGCACCCACTTGCCTAAATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTAGGATTTAGTAGTCAGCACCCACTTGCCTAAATAAATA  50

seq1  AAAACAGCATCAAAAACACAAGGCAGACACTGTTTAACAAACCAGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCATCAAAAACACAAGGCAGACACTGTTTAACAAACCAGGATTT  100

seq1  TCCAAATGTTTCCAAATGTTCTGGCGATATTTCGATCAGCTGGAGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTTTCCAAATGTTCTGGCGATATTTCGATCAGCTGGAGATGGC  150

seq1  CCAGCTAAGACTTCTTAGGAATTAAAAAAAAAAAAAGTAATTAAAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAGACTTCTTAGGAATTAAAAAAAAAAAAAGTAATTAAAACTAT  200

seq1  CCAGGCCCTAGTGACCCTTTCCCAATAATTCACTTATGGTTTATACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCTAGTGACCCTTTCCCAATAATTCACTTATGGTTTATACTTGG  250

seq1  AGATGTATATAATATCACATTACTTAAGTGTGGGAGGGGTTAGGCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATATAATATCACATTACTTAAGTGTGGGAGGGGTTAGGCAAGAG  300

seq1  TGTCAGGTTCCGCTGTGGGCATCCGTCGTCCGGATGGCTCTGACTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTTCCGCTGTGGGCATCCGTCGTCCGGATGGCTCTGACTTTCTC  350

seq1  CCAGGCAGCAGTTGATATTTTATAGCCTTGTAATTCAGTTGACTGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGCAGTTGATATTTTATAGCCTTGTAATTCAGTTGACTGTCACT  400

seq1  CAGTTCACACGTGGAGCACCAGTGACATAGATATACACAGACACCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACACGTGGAGCACCAGTGACATAGATATACACAGACACCAAATG  450

seq1  TGCTAATTACAAAGGCAGCGCAGGTGGGAGGCCCTGGTTACAACCCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTACAAAGGCAGCGCAGGTGGGAGGCCCTGGTTACAACCCCTGT  500

seq1  ATAACAACAGTGGCAGATTGCGAAGAGAGGGCCGTTCATCATCCGATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACAGTGGCAGATTGCGAAGAGAGGGCCGTTCATCATCCGATAAC  550

seq1  ATCAAGGCTCGCAGGGTAGAATGTTCTGGGCTGAGTTTACAGAGCTCCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGCTCGCAGGGTAGAATGTTCTGGGCTGAGTTTACAGAGCTCCGC  600

seq1  AGCTTTGCCCCCTTCGAGACTCTCCAGCGATGGGGCACTGGTTGTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCCCCTTCGAGACTCTCCAGCGATGGGGCACTGGTTGTTTGGT  650

seq1  GGAATGGTGGCAGGAAGAAAAGATAGCCATGGGTGGGTAGGGTGAAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTGGCAGGAAGAAAAGATAGCCATGGGTGGGTAGGGTGAAGGGG  700

seq1  GTTTCAGAGACGGAAGAGCTATTTGCCCCGGTCGAGCTGAGTCACTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGACGGAAGAGCTATTTGCCCCGGTCGAGCTGAGTCACTGTGA  750

seq1  TAATTTGGTTTTAC-TTTAGAAGTGACACTCTGACGTAGCAGTCAGAAAT  799
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  TAATTTGGTTTTACTTTTAGAAGTGACACTCTGACGTAGCAGTCAG-AAT  799

seq1  TACTTTTCATTAATTTTTAAATTATATTTTTACATTTAAATTTTTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCATTAATTTTTAAATTATATTTTTACATTTAAATTTTTTTCAT  849

seq1  CTATATATGTATGTGAGTGTAGTTA  874
      |||||||||||||||||||||||||
seq2  CTATATATGTATGTGAGTGTAGTTA  874