BAC Information

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BAC

Clone NameB6Ng01-183H17
Chromosome3 (Build37)
Map Location 72,546,718 - 72,680,501
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183H17.bB6Ng01-183H17.g
ACCGA009092GA009093
length1,147853
definitionB6Ng01-183H17.b B6Ng01-183H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,546,718 - 72,547,866)(72,679,944 - 72,680,501)
sequence
gaattcagtcttatcatttgaagactgaatctcagccattggatttaaac
caaagacatgagttttctaagatattaacttttaaaatatgttttaggct
caaactaatgttttacaatcattttgattggtttcaatatatgcattctt
aggtggtgtcaaaagtgaaatctctagtaacacccacgtttattctcttg
tattttatggattcctttaatttattttaaattttgtattacagtttttc
ttcttacttttaaatttcctgatattctctgtttggtagtgggaattgag
acaaatagatttcagatttattttaatttagtcagtagtcaaagtggatt
tgagattcatcgttgctatggttacccacagcactatctattaatttctt
cactggcataatgtgtttgaaatggcagttagctagaggttcttccccca
atgtctgctctgccctttgcttttagcccactgttgtggtaggtgtcatt
aaaaatacatgtctcttgcaactgctttatctctactttatgattatttg
cttgtaatgtatgttagcctgctcccagggttggcatttttgatatctcg
attgggcatgggttttaggcaatgtttcccaggaacctcactcttttctg
ggtatggtattttctttctcatgtatttcttctctcccaccactccttaa
agttcttctttatgtcttttattctttctccagttgcaatgtttcttcat
taacaccatataaacaataacaattttaggtcttcctccttaatattttg
cacagcattatttttcacgagataaaaacgaggtagacaagtttacaagc
ttgttatgattctctctagaacagcataagggatagataatcattatctt
ctcaatgaaagccttacattttatttcaataacatttttttatggaataa
aactacaggtcaatatttttggcaatgagagaaatgaaaatgtatatgag
catctaaatttgctaatgttttcatatactatagacattctgatttttgg
agaagttacatctgcaggatagcatccattttatatatgggcacgaatgt
gtattggaactctttgctcttacatccacacagcactttaattcttc

gaattccacacccctgagccccttaacccataaaaccccctaactttcaa
gcctcgtggccgacatccgttatctcctgtgtgggatacatgttggtcct
gagctccgtaattaaatgtcctcatgtaattacaacaagatgtctgttcg
tgattcttgggtgcacgccgaatcgggaattgggtgggggtttccccact
agattctttcagagccagaagattaaaacaaattgccagagttagtttga
gatcaagcagagcaattcaggttagaagttgaggggagtcaggtttgtgg
tggatagccctggggctaattatatttgatcttaattctattctcctgtg
agggacttcaaacaatgaatgagtcagcactcaagtgatttcctgtaaac
ctgcttcacaccttaatttgtaaaataaaggagagctgataaagggaagg
tggagcagaaggttgggtgagagaaggagaaaatgggagagagagaggat
gcagaggaggaggaaaaagaaaagcagagctgaagcacatggcctggaga
aaccaaaagttctaaggggtctcatagatgtggaagatggtagtgtagtg
gtagatctgcccaatctaggtgcacagcatgcattcatattaattgagta
gtattttcattgctggggcatatttgggatggagatttggttcatattgt
tattcctccctatggagttgtaaatccccttcagctccttgggtcctttc
tctagctcctccattgggggaccttaagaacacattaaaagaaatcttta
aaatatcttgtataatattgtcaacatattagaatttttattaactttaa
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72546718_72547866
seq2: B6Ng01-183H17.b_45_1191

seq1  GAATTCAGTCTTATCATTTGAAGACTGAATCTCAGCCATTGGATTTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTATCATTTGAAGACTGAATCTCAGCCATTGGATTTAAAC  50

seq1  CAAAGACATGAGTTTTCTAAGATATTAACTTTTAAAATATGTTTTAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATGAGTTTTCTAAGATATTAACTTTTAAAATATGTTTTAGGCT  100

seq1  CAAACTAATGTTTTACAATCATTTTGATTGGTTTCAATATATGCATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAATGTTTTACAATCATTTTGATTGGTTTCAATATATGCATTCTT  150

seq1  AGGTGGTGTCAAAAGTGAAATCTCTAGTAACACCCACGTTTATTCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGTCAAAAGTGAAATCTCTAGTAACACCCACGTTTATTCTCTTG  200

seq1  TATTTTATGGATTCCTTTAATTTATTTTAAATTTTGTATTACAGTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGGATTCCTTTAATTTATTTTAAATTTTGTATTACAGTTTTTC  250

seq1  TTCTTACTTTTAAATTTCCTGATATTCTCTGTTTGGTAGTGGGAATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTTTAAATTTCCTGATATTCTCTGTTTGGTAGTGGGAATTGAG  300

seq1  ACAAATAGATTTCAGATTTATTTTAATTTAGTCAGTAGTCAAAGTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGATTTCAGATTTATTTTAATTTAGTCAGTAGTCAAAGTGGATT  350

seq1  TGAGATTCATCGTTGCTATGGTTACCCACAGCACTATCTATTAATTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCATCGTTGCTATGGTTACCCACAGCACTATCTATTAATTTCTT  400

seq1  CACTGGCATAATGTGTTTGAAATGGCAGTTAGCTAGAGGTTCTTCCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCATAATGTGTTTGAAATGGCAGTTAGCTAGAGGTTCTTCCCCCA  450

seq1  ATGTCTGCTCTGCCCTTTGCTTTTAGCCCACTGTTGTGGTAGGTGTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTCTGCCCTTTGCTTTTAGCCCACTGTTGTGGTAGGTGTCATT  500

seq1  AAAAATACATGTCTCTTGCAACTGCTTTATCTCTACTTTATGATTATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACATGTCTCTTGCAACTGCTTTATCTCTACTTTATGATTATTTG  550

seq1  CTTGTAATGTATGTTAGCCTGCTCCCAGGGTTGGCATTTTTGATATCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATGTATGTTAGCCTGCTCCCAGGGTTGGCATTTTTGATATCTCG  600

seq1  ATTGGGCATGGGTTTTAGGCAATGTTTCCCAGGAACCTCACTCTTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCATGGGTTTTAGGCAATGTTTCCCAGGAACCTCACTCTTTTCTG  650

seq1  GGTATGGTATTTTCTTTCTCATGTATTTCTTCTCTCCCACCACTCCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTATTTTCTTTCTCATGTATTTCTTCTCTCCCACCACTCCTTAA  700

seq1  AGTTCTTCTTTATGTCTTTTATTCTTTCTCCAGTTGCAATGTTTCTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTTTATGTCTTTTATTCTTTCTCCAGTTGCAATGTTTCTTCAT  750

seq1  TAACACCATATAAACAATAACAATTTTAGGTCTTCCTCCTTAATATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCATATAAACAATAACAATTTTAGGTCTTCCTCCTTAATATTTTG  800

seq1  CACAGCATTATTTTTCACGAGATAAAAACGAGGTAGACAAGTTTACAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTATTTTTCACGAGATAAAAACGAGGTAGACAAGTTTACAAGC  850

seq1  TTGTTATGATTCTCTCTAGAACAGCATAA-GGATAGATAATCATTATCTT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGTTATGATTCTCTCTAGAACAGCATAAGGGATAGATAATCATTATCTT  900

seq1  CTCAATGAAAGCCTTACATTTTATTTCAATAACA-TTTTTTATGGAATAA  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCAATGAAAGCCTTACATTTTATTTCAATAACATTTTTTTATGGAATAA  950

seq1  AACTACAGGTCAATA-TTTTGGCAATGAGAGAAATGAAAATGTATATGAG  997
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTACAGGTCAATATTTTTGGCAATGAGAGAAATGAAAATGTATATGAG  1000

seq1  CATCTAAATTTGCTAATGTTTTCATATACTATAGACATTCTGATTTTTTG  1047
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATCTAAATTTGCTAATGTTTTCATATACTATAGACATTCTGATTTTTGG  1050

seq1  AGAAAGTTACAATTCTGCAGGATAGCAATCCA-TTTATATAT-GGCACGA  1095
      || ||||||||  ||||||||||||| ||||| ||||||||| |||||| 
seq2  AG-AAGTTACA--TCTGCAGGATAGC-ATCCATTTTATATATGGGCACG-  1095

seq1  AATGTGTA-TGGAACTCTTTGCCTCTTAACAATCCACACAAGCACTTT-A  1143
      |||||||| |||||||||||| ||||||   |||||||| |||||||| |
seq2  AATGTGTATTGGAACTCTTTG-CTCTTA--CATCCACAC-AGCACTTTAA  1141

seq1  TTCTTC  1149
      ||||||
seq2  TTCTTC  1147


seq1: chr3_72679944_72680501
seq2: B6Ng01-183H17.g_356_918 (reverse)

seq1  ATTTT-AAGTTAATAAAAAATTCTAATATGTTGACAATATTATACAAGAT  49
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGTTAAT-AAAAATTCTAATATGTTGACAATATTATACAAGAT  49

seq1  ATTTTAAAGATTTC-TTTAATGTGTTCTT-AGGT-CCCCAATGGAGGAGC  96
      |||||||||||||| |||||||||||||| |||| |||||||||||||||
seq2  ATTTTAAAGATTTCTTTTAATGTGTTCTTAAGGTCCCCCAATGGAGGAGC  99

seq1  TAGAGAAAGGACCCAAGGAGCTGAA-GGGATTTACAACTCCATA-GGAGG  144
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TAGAGAAAGGACCCAAGGAGCTGAAGGGGATTTACAACTCCATAGGGAGG  149

seq1  AATAACAATATGAACCAAATCTCCATCCCAAATATGCCCCAGCAATGAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATATGAACCAAATCTCCATCCCAAATATGCCCCAGCAATGAAA  199

seq1  ATACTACTCAATTAATATGAATGCATGCTGTGCACCTAGATTGGGCAGAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTCAATTAATATGAATGCATGCTGTGCACCTAGATTGGGCAGAT  249

seq1  CTACCACTACACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTACACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTTT  299

seq1  GGTTTCTCCAGGCCATGTGCTTCAGCTCTGCTTTTCTTTTTCCTCCTCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCCAGGCCATGTGCTTCAGCTCTGCTTTTCTTTTTCCTCCTCCT  349

seq1  CTGCATCCTCTCTCTCTCCCATTTTCTCCTTCTCTCACCCAACCTTCTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTCTCTCTCTCCCATTTTCTCCTTCTCTCACCCAACCTTCTGC  399

seq1  TCCACCTTCCCTTTATCAGCTCTCCTTTATTTTACAAATTAAGGTGTGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTCCCTTTATCAGCTCTCCTTTATTTTACAAATTAAGGTGTGAA  449

seq1  GCAGGTTTACAGGAAATCACTTGAGTGCTGACTCATTCATTGTTTGAAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTACAGGAAATCACTTGAGTGCTGACTCATTCATTGTTTGAAGT  499

seq1  CCCTCACAGGAGAATAGAATTAAGATCAAATATAATTAGCCCCAGGGCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAGGAGAATAGAATTAAGATCAAATATAATTAGCCCCAGGGCTA  549

seq1  TCCACCACAAACCT  558
      ||||||||||||||
seq2  TCCACCACAAACCT  563


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