BAC Information

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BAC

Clone NameB6Ng01-183J14
Chromosome13 (Build37)3 (Build37)
Map Location 83,608,468 - 83,608,69438,995,997 - 38,997,143
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J14.bB6Ng01-183J14.g
ACCGA009182GA009183
length1,0531,141
definitionB6Ng01-183J14.b B6Ng01-183J14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,608,468 - 83,608,694)(38,995,997 - 38,997,143)
sequence
gaattccctaactacaatctaaatatttgtccttatacccacatatagaa
gagttctcacccctcatcagggagacttccttttgcaacagatggaaacc
atttcagaaaaccacaaccaaacaaagtgtggagttgtagagctcagtct
caatggatacatctacagatcactcccacaactatggctcaaggacatta
caaaagaggaggcagaaaagttataagagtatgaggatgaaggagtttgt
tgtgaggctgtgcctactaggaatgtcaaaagacacacccatgtatcctt
atccttagggttgcagaaatatgaactaaacaaggacagcaccaatagac
atctaacttgggcagaggaaagaacaagaggagtcagtctgacacaaaga
acttcaggccacaaggactgctgagaatgggagaaacagtcttgcccagg
gaaaagctcatcaactggttatccaatgccgagtggtcaaccctaaacac
atacatacaagtaacactatgcagactgagcaggttatatttagaaatac
atatgcatacatgcatgtaataaaagcaagtagtgagaaagaggtcatga
atgtgaaaaaaaagtaaggaggagtacacggaggtttgagaagaagaaaa
tataaaggggaaaggatataattataatctcaaaagcataaaatacatct
taaatgtaaacacaggtatcatacatttttcctagcttagaactcacata
acctgcttgtactgttaatataggcatcaaatgaagttctttattctttt
ttgtttttttttgtttttttgatgttttacaaatgtatgctttttattgg
gttagatatctttatcttgttaaatgctgatcatactttatacagaaaac
attcagaaactctttcttcagacttctttgaagcgtacagtacattgtta
ttggtagtcatcctaccatgtgctaacattagaaattccttaaattcatc
taaacttaaacctagaatttctgaatcaaccatcgctactctcttccctc
ttt

gaattctaaaattctagcttagcttgacctcctcactaaacagttagtag
aataaccatctcttgtgatctttgattattaacagattttttccagacat
tgactggcagacttgaggacagaagtgtgttcctagactctgtgatagaa
ggattggtctataaagagtttgcctttatattttagagaggccacttccc
ttcctttgcaccctaaatgaattttttgtttgctgtgtgatcagatatgc
taaaccagttttatgatccaataaatcagcttcaacaaaggctaagttgt
ttcagtaaatcatccccacattaaaaaagaagttcagtacataactctga
tgataggtgtttctcatacatggtgttagctctaacaactagtctgtggg
gatggaaagatggccaggccagtgtctctggctttgggacagtcatcgta
ctcctgtgactaataagcatgcatatgggtgactttgcttccagtgtgtc
ttcactggacacttgatcaaatatatacttaaattttctcaacacaaatc
ttaaacacaatcataaacactaatatcagttatcttggacttgatttcag
gcacacatacacaaacccacaaatggagtaaatttacaggcgaaaaaatg
taatacaacccaaaatacacatgaagaacaacacagcttcagaaatactt
ggataacggcagctatttccaaaataaaagcctatgtaacgcaagaaatt
ggagtcagaccacagtggaatgaagtaaccccaaagaatttcttaattat
caatgcaaatcaaaaaagaattcatccctagacctcttgctggaagagga
aacttgagttatagatgaggctgaaaatattcttttttagatgaacagtt
tagataagtgcctggaactttccagcactccttaaaacacagcagcgctg
gctgaagaatatctcaagtctttcagtcgcccacattagacttacatgat
ttgtggagcgaattctgagctgccatcatcagtgagttctcctgcgggtc
cacatggggggtacctgctcttcttcagcggataaaacatggagtggtgg
ggtactggcatgataggacagtacattggcatgaactctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83608468_83608694
seq2: B6Ng01-183J14.b_866_1099

seq1  TGATGTTTTACAAACGTATGCTTTTTATTGGGTTAGATATCTTTATCTTG  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTACAAATGTATGCTTTTTATTGGGTTAGATATCTTTATCTTG  50

seq1  TTAAATGCCGATCATACCTTATACGGAAAACATTCAG-AACT-TTTCTTC  98
      |||||||| |||||||| |||||| |||||||||||| |||| |||||||
seq2  TTAAATGCTGATCATACTTTATACAGAAAACATTCAGAAACTCTTTCTTC  100

seq1  TGGC-TCTTTGAAGCATACAGTACATTGTTATAGGTAGTCATCCTACCAT  147
       | | |||||||||| |||||||||||||||| |||||||||||||||||
seq2  AGACTTCTTTGAAGCGTACAGTACATTGTTATTGGTAGTCATCCTACCAT  150

seq1  GTGCTAACATCAGAAATTC--TTAATTCATCTAAACTT-AACCTAGAA-T  193
      |||||||||| ||||||||  | ||||||||||||||| ||||||||| |
seq2  GTGCTAACATTAGAAATTCCTTAAATTCATCTAAACTTAAACCTAGAATT  200

seq1  TCTTGATCAACCATCGCTACTCTCTCCCTTCTTT  227
      |||  |||||||||||||||||||| || |||||
seq2  TCTGAATCAACCATCGCTACTCTCTTCCCTCTTT  234


seq1: chr3_38995997_38997143
seq2: B6Ng01-183J14.g_65_1205

seq1  GAATTCTAAAATTCTAGCTTAGCTTGACCTCCTCACTAAACAGTTAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATTCTAGCTTAGCTTGACCTCCTCACTAAACAGTTAGTAG  50

seq1  AATAACCATCTCTTGTGATCTTTGATTATTAACAGATTTTTTCCAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATCTCTTGTGATCTTTGATTATTAACAGATTTTTTCCAGACAT  100

seq1  TGACTGGCAGACTTGAGGACAGAAGTGTGTTCCTAGACTCTGTGATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCAGACTTGAGGACAGAAGTGTGTTCCTAGACTCTGTGATAGAA  150

seq1  GGATTGGTCTATAAAGAGTTTGCCTTTATATTTTAGAGAGGCCACTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGTCTATAAAGAGTTTGCCTTTATATTTTAGAGAGGCCACTTCCC  200

seq1  TTCCTTTGCACCCTAAATGAATTTTTTGTTTGCTGTGTGATCAGATATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCACCCTAAATGAATTTTTTGTTTGCTGTGTGATCAGATATGC  250

seq1  TAAACCAGTTTTATGATCCAATAAATCAGCTTCAACAAAGGCTAAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGTTTTATGATCCAATAAATCAGCTTCAACAAAGGCTAAGTTGT  300

seq1  TTCAGTAAATCATCCCCACATTAAAAAAGAAGTTCAGTACATAACTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAATCATCCCCACATTAAAAAAGAAGTTCAGTACATAACTCTGA  350

seq1  TGATAGGTGTTTCTCATACATGGTGTTAGCTCTAACAACTAGTCTGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTGTTTCTCATACATGGTGTTAGCTCTAACAACTAGTCTGTGGG  400

seq1  GATGGAAAGATGGCCAGGCCAGTGTCTCTGGCTTTGGGACAGTCATCGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAGATGGCCAGGCCAGTGTCTCTGGCTTTGGGACAGTCATCGTA  450

seq1  CTCCTGTGACTAATAAGCATGCATATGGGTGACTTTGCTTCCAGTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGACTAATAAGCATGCATATGGGTGACTTTGCTTCCAGTGTGTC  500

seq1  TTCACTGGACACTTGATCAAATATATACTTAAATTTTCTCAACACAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGACACTTGATCAAATATATACTTAAATTTTCTCAACACAAATC  550

seq1  TTAAACACAATCATAAACACTAATATCAGTTATCTTGGACTTGATTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACAATCATAAACACTAATATCAGTTATCTTGGACTTGATTTCAG  600

seq1  GCACACATACACAAACCCACAAATGGAGTAAATTTACAGGCGAAAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATACACAAACCCACAAATGGAGTAAATTTACAGGCGAAAAAATG  650

seq1  TAATACAACCCAAAATACACATGAAGAACAACACAGCTTCAGAAATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAACCCAAAATACACATGAAGAACAACACAGCTTCAGAAATACTT  700

seq1  GGATAACGGCAGCTATTTCCAAAATAAAAGCCTATGTAACGCAAGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACGGCAGCTATTTCCAAAATAAAAGCCTATGTAACGCAAGAAATT  750

seq1  GGAGTCAGACCACAGTGGAATGAAGTAACCCCAAAGAATTTCTTAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGACCACAGTGGAATGAAGTAACCCCAAAGAATTTCTTAATTAT  800

seq1  CAATGCAAATCAAAAAAGAATTCATCCCTAGACCTCTTGCTGGAAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAATCAAAAAAGAATTCATCCCTAGACCTCTTGCTGGAAGAGGA  850

seq1  AACTTGAGTTATAGATGAGGCTGAAAATATTCTTTTTTAGATGAACAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGTTATAGATGAGGCTGAAAATATTCTTTTTTAGATGAACAGTT  900

seq1  TAGATAAGTGCCTGGAACTTTCCAGCACTCCTTAAAACACAGCAGCGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAGTGCCTGGAACTTTCCAGCACTCCTTAAAACACAGCAGCGCTG  950

seq1  GCTGAAGAATATCTCCAGTCTTTCAGTCGCCCACATTAGACTTACATGAT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAATATCTCAAGTCTTTCAGTCGCCCACATTAGACTTACATGAT  1000

seq1  TTGTGGAGCGAATTCTGAGCTGCCATCATCAGTGAAGTTCTCCTTGGCGG  1050
      |||||||||||||||||||||||||||||||||| |||||||||  ||||
seq2  TTGTGGAGCGAATTCTGAGCTGCCATCATCAGTG-AGTTCTCCT--GCGG  1047

seq1  GGTCACATGGGGGGTACCCTGCTCCTTCTCAGCAGATAAAACAT-GAGGT  1099
      |  ||||||||||||| ||||||| |  ||||| |||||||||| |||  
seq2  GTCCACATGGGGGGTA-CCTGCTCTTCTTCAGCGGATAAAACATGGAGTG  1096

seq1  GTGGGGTACTGGCATGATAGGACAGGAACAAATGGCCATGAACTCTGG  1147
      |||||||||||||||||||||||||    | || | ||||||||||||
seq2  GTGGGGTACTGGCATGATAGGACAG---TACATTGGCATGAACTCTGG  1141


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