BAC Information

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BAC

Clone NameB6Ng01-184A24
Chromosome3 (Build37)
Map Location 115,951,739 - 116,089,108
singlet/doubletdoublet
Overlap geneGpr88, Cdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184A24.bB6Ng01-184A24.g
ACCGA009533GA009534
length1,173769
definitionB6Ng01-184A24.b B6Ng01-184A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,951,739 - 115,952,922)(116,088,341 - 116,089,108)
sequence
gaattcttctttgttaatgctcttcattgtggaaggaagaaaatgtgggg
ttagggcctattctgtcctggaatttagcccttgaaatgcatttagaagg
gaggcagatgttatacagcttaataggcatgcacggaaagaaaaagaagc
acaaaagtaaattaggacagcccaggatagcagttaggatatatatatat
atataaattcctgagtggataatatgtggtttcatttaaataagaacaca
atctccattaatttaatttgtcaaagcagtaactccaacacttgcaggca
gcgcctaggcaggcatttttagatgcttcagtgctactttaaaactaaaa
ggagacagtcctgtggagttaattactagtaaattaatcaaaagtaggcc
tcccatgtggcacagtgccagcctgggagtgctagccagaaacatggcaa
ggtatcagagtctcattcacaaatctctatatatgtgtggtgcattattg
ggacagagagggaacatgagaaaccaggacaatggttaactagaagagct
tgttgacagagctttagaacatcgccatctctctgttatctttatgaccc
attcctccatgtttacagaaagaaaacatagctatttcttttcccagacc
aatgtaaggagcttatgtaactatatgaagtaaaaagcattttagaaact
gaaaacaaacttacagccagcaaaaaaggagtcgctctgtatctgtagtg
ttttggaacagtgtcttcgggtacaggatccttaagacagagacagagag
aggatacccaagaaagaagagatagagccaagagaagcattatggaaact
ttaattaaatatctgaatccaggaaactggaaacagaagaaatcttcgta
agagaaaaatgacacatgcacacagtttgggttaatgacatgactgccaa
cgtattgttagtgacaaacatatttatttttattttgccttgctaataaa
aatatctgtttcccgtgtctcccaatttttcaaaaaatacaaatgttcct
taacattctggtccagagtgcaacaaaagcaagctgtcttgcttctgaat
aacacaggttaattgagctattggcccagaatttttatggtgaataacag
actggtctaggccctctgtttaa
gaattcatcagtcgcgttggagcgattaccacgtgacaggcgcacagcca
gaagagttgatggtgaactgtgaattctcctactttctgctgttactgtg
aggacctgaggccacacatgggaggattgggatggtgggtcccagcaggc
ggagttggtaaggaagtgtcacatagggaaagcattggagctaagggagt
ttaagaaagggataatataacaagaagttggggagggtctcccccttttc
ttcctcttctaatcaaaaagaaaaggtttaatgtgtttccttttgtgtgg
ttgttttgtgctcatctgaaccccctatcactgagcctgttttaatggtt
tgctgatcagcagaccccaccaacagggtatgatacagtttgtttgccat
ttaatatttttttatagcatataaaacatttttctgaattaatatatgtt
gttgtacttgttcttagcctaaatgctcaggtgtgatttcaaatgttctt
tttttttttttaatggatttttaatctttagagtgctagagatgggatca
ataggtttagggtttttttgttattgttctttcttacttttttttttaag
tatagtgttaaaaacctgtggcgccttaaaccagttcaaggcctattgta
cttaaaccagtttgtacagttggcactatgtagaatttaaaaatttatac
atgcattaaatttttatattttatttatttgtgtgtgagtgtgtgtgcgt
gagtgtgtgtgtaaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115951739_115952922
seq2: B6Ng01-184A24.b_44_1216

seq1  GAATTCTTCTTTGTTAATGCTCTTCATTGTGGAAGGAAGAAAATGTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGTTAATGCTCTTCATTGTGGAAGGAAGAAAATGTGGGG  50

seq1  TTAGGGCCTATTCTGTCCTGGAATTTAGCCCTTGAAATGCATTTAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCCTATTCTGTCCTGGAATTTAGCCCTTGAAATGCATTTAGAAGG  100

seq1  GAGGCAGATGTTATACAGCTTAATAGGCATGCACGGAAAGAAAAAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATGTTATACAGCTTAATAGGCATGCACGGAAAGAAAAAGAAGC  150

seq1  ACAAAAGTAAATTAGGACAGCCCAGGATAGCAGTTAGGATATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTAAATTAGGACAGCCCAGGATAGCAGTTAGGATATATATATAT  200

seq1  ATATAAATTCCTGAGTGGATAATATGTGGTTTCATTTAAATAAGAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTCCTGAGTGGATAATATGTGGTTTCATTTAAATAAGAACACA  250

seq1  ATCTCCATTAATTTAATTTGTCAAAGCAGTAACTCCAACACTTGCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATTAATTTAATTTGTCAAAGCAGTAACTCCAACACTTGCAGGCA  300

seq1  GCGCCTAGGCAGGCATTTTTAGATGCTTCAGTGCTACTTTAAAACTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTAGGCAGGCATTTTTAGATGCTTCAGTGCTACTTTAAAACTAAAA  350

seq1  GGAGACAGTCCTGTGGAGTTAATTACTAGTAAATTAATCAAAAGTAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGTCCTGTGGAGTTAATTACTAGTAAATTAATCAAAAGTAGGCC  400

seq1  TCCCATGTGGCACAGTGCCAGCCTGGGAGTGCTAGCCAGAAACATGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTGGCACAGTGCCAGCCTGGGAGTGCTAGCCAGAAACATGGCAA  450

seq1  GGTATCAGAGTCTCATTCACAAATCTCTATATATGTGTGGTGCATTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAGAGTCTCATTCACAAATCTCTATATATGTGTGGTGCATTATTG  500

seq1  GGACAGAGAGGGAACATGAGAAACCAGGACAATGGTTAACTAGAAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGAGGGAACATGAGAAACCAGGACAATGGTTAACTAGAAGAGCT  550

seq1  TGTTGACAGAGCTTTAGAACATCGCCATCTCTCTGTTATCTTTATGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGAGCTTTAGAACATCGCCATCTCTCTGTTATCTTTATGACCC  600

seq1  ATTCCTCCATGTTTACAGAAAGAAAACATAGCTATTTCTTTTCCCAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCATGTTTACAGAAAGAAAACATAGCTATTTCTTTTCCCAGACC  650

seq1  AATGTAAGGAGCTTATGTAACTATATGAAGTAAAAAGCATTTTAGAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGGAGCTTATGTAACTATATGAAGTAAAAAGCATTTTAGAAACT  700

seq1  GAAAACAAACTTACAGCCAGCAAAAAAGGAGTCGCTCTGTATCTGTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAACTTACAGCCAGCAAAAAAGGAGTCGCTCTGTATCTGTAGTG  750

seq1  TTTTGGAACAGTGTCTTCGGGTACAGGATCCTTAAGACAGAGACAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAACAGTGTCTTCGGGTACAGGATCCTTAAGACAGAGACAGAGAG  800

seq1  AGGATACCCAAGAAAGAAGAGATAGAGCCAAGAGAAGCATTATGGAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACCCAAGAAAGAAGAGATAGAGCCAAGAGAAGCATTATGGAAACT  850

seq1  TTAATTAAATATCTGAATCCAGGAAACTGGAAACAGAAGAAATCTTCGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAATATCTGAATCCAGGAAACTGGAAACAGAAGAAATCTTCGTA  900

seq1  AGAGAAAAATGACACATGCACACAGTTT-GGTTAATGACATGACTGCCAA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGAAAAATGACACATGCACACAGTTTGGGTTAATGACATGACTGCCAA  950

seq1  CGTATTGTTAGTGACAAACATATTTA-TTTTATTTTGCCTTGCTA--TAA  996
      |||||||||||||||||||||||||| ||||||||||||||||||   ||
seq2  CGTATTGTTAGTGACAAACATATTTATTTTTATTTTGCCTTGCTAATAAA  1000

seq1  AATATCTGTTTCCCGTGTCTCCCAATTTTTTCAAAAATACAAATGTT-CT  1045
      ||||||||||||||||||||||||||||||  ||||||||||||||| ||
seq2  AATATCTGTTTCCCGTGTCTCCCAATTTTTCAAAAAATACAAATGTTCCT  1050

seq1  TACCATTCTTGGTCCAAGAGTGCAAC-AAAGCAAGCTGTCTTTGCTCCTG  1094
      || ||||| |||||| |||||||||| ||||||||||||| ||||| |||
seq2  TAACATTC-TGGTCC-AGAGTGCAACAAAAGCAAGCTGTC-TTGCTTCTG  1097

seq1  AATTACACA-GTTAATTGAGGCTATTTGGCCCCAGA--TTTTAT-GTGGA  1140
      ||| ||||| ||||||||| ||||||  | ||||||  |||||| ||| |
seq2  AATAACACAGGTTAATTGA-GCTATT--GGCCCAGAATTTTTATGGTGAA  1144

seq1  TAACAGACTGGTCTAGGCCTCCTGTTACTTTCTTCCCTGTTTAA  1184
      |||||||||||||||||||               | ||||||||
seq2  TAACAGACTGGTCTAGGCC---------------CTCTGTTTAA  1173

seq1: chr3_116088341_116089108
seq2: B6Ng01-184A24.g_65_833 (reverse)

seq1  CATATATACACACACACTCACGCACACACACTCACACACAAATAAAT-AA  49
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATATTTACACACACACTCACGCACACACACTCACACACAAATAAATAAA  50

seq1  ATATAAAAATTTAATGCATGTATAAATTTTTAAATTCTACATAGTGCCAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATTTAATGCATGTATAAATTTTTAAATTCTACATAGTGCCAA  100

seq1  CTGTACAAACTGGTTTAAGTACAATAGGCCTTGAACTGGTTTAAGGCGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAAACTGGTTTAAGTACAATAGGCCTTGAACTGGTTTAAGGCGCC  150

seq1  ACAGGTTTTTAACACTATACTTAAAAAAAAAAGTAAGAAAGAACAATAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTTAACACTATACTTAAAAAAAAAAGTAAGAAAGAACAATAAC  200

seq1  AAAAAAACCCTAAACCTATTGATCCCATCTCTAGCACTCTAAAGATTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCTAAACCTATTGATCCCATCTCTAGCACTCTAAAGATTAAA  250

seq1  AATCCATTAAAAAAAAAAAAAGAACATTTGAAATCACACCTGAGCATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTAAAAAAAAAAAAAGAACATTTGAAATCACACCTGAGCATTTA  300

seq1  GGCTAAGAACAAGTACAACAACATATATTAATTCAGAAAAATGTTTTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGAACAAGTACAACAACATATATTAATTCAGAAAAATGTTTTATA  350

seq1  TGCTATAAAAAAATATTAAATGGCAAACAAACTGTATCATACCCTGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAAAAAATATTAAATGGCAAACAAACTGTATCATACCCTGTTGG  400

seq1  TGGGGTCTGCTGATCAGCAAACCATTAAAACAGGCTCAGTGATAGGGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGCTGATCAGCAAACCATTAAAACAGGCTCAGTGATAGGGGGT  450

seq1  TCAGATGAGCACAAAACAACCACACAAAAGGAAACACATTAAACCTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAGCACAAAACAACCACACAAAAGGAAACACATTAAACCTTTTC  500

seq1  TTTTTGATTAGAAGAGGAAGAAAAGGGGGAGACCCTCCCCAACTTCTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATTAGAAGAGGAAGAAAAGGGGGAGACCCTCCCCAACTTCTTGT  550

seq1  TATATTATCCCTTTCTTAAACTCCCTTAGCTCCAATGCTTTCCCTATGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATCCCTTTCTTAAACTCCCTTAGCTCCAATGCTTTCCCTATGTG  600

seq1  ACACTTCCTTACCAACTCCGCCTGCTGGGACCCACCATCCCAATCCTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCTTACCAACTCCGCCTGCTGGGACCCACCATCCCAATCCTCCC  650

seq1  ATGTGTGGCCTCAGGTCCTCACAGTAACAGCAGAAAGTAGGAGAATTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGCCTCAGGTCCTCACAGTAACAGCAGAAAGTAGGAGAATTCAC  700

seq1  AGTTCACCATCAACTCTTCTGGCTGTGCGCCTGTCACGTGGTAATCGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACCATCAACTCTTCTGGCTGTGCGCCTGTCACGTGGTAATCGCTC  750

seq1  CAACGCGACTGATGAATTC  768
      |||||||||||||||||||
seq2  CAACGCGACTGATGAATTC  769