BAC Information

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BAC

Clone NameB6Ng01-184B20
Chromosome3 (Build37)
Map Location 94,540,459 - 94,541,600
singlet/doubletsinglet
Overlap geneLOC100042801
Upstream geneEG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2
Downstream geneCgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184B20.bB6Ng01-184B20.g
ACCGA009571GA009572
length1,151352
definitionB6Ng01-184B20.b B6Ng01-184B20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagctaaaccgttaagttgagcattacttcctacatttctaag
catgtgcaacaaaactgtagcagtgtttttagcaaacaatcctgtccagc
cccgctgtggcctgggcacatccactgacaccagcagtgtaaggtcagag
tggcagacatggctcctttaaagggaaccttttacataagtacttcatgg
attcccctggccttttgataaacaaacttcaggtggtctggacagcttca
gtattcttaaagtgaacacaaagacttaaaccacttgatttgaataactt
tgtagggatttctggatccagagggtagtaaactattttcaacaggttac
cacaggctgtgaaaagaagagggtgtctccattttttttctcattcattc
aagaataatacataaatgaactcgtatggcatctaccttttttttttttt
taattttttcctacttgtaattttctggagatttctagaacatttatcag
tatttgtttctttttattgctgaataatgttctaacataatggatttaca
aatttaacagttcccagggttagagagatgactcagctgccagagcactg
ctcttccagaggacctgggtttgactcccaccacccgcatggtggtgaag
tatcctggcttccttggttatcatgtatgcacatggtagactgatgtagg
gcaggcagagcaccatacatgtaacatcaagtgaaagcactgtcatctgc
tctctgggtgggactggatggaattggcactacttcctgaacagtctgtg
agctgatagagtggagagaactcctcaggcctggtgagttagttctgctg
tgagagttcagattattatcctggcattctcaggagctatagtctcacat
ttcattttggattcagtgggctcatagtggtagagggttttaatttgtgt
tttctctctcatttttaggaattggttcatttaatctaagtgatcaaatt
tatgctcagagttgttcatagtattactttatttctttttgatagctaca
gggatttttagaaataattggcttcattatctttgcagtttgggagatgc
cttgaagcaggatttacttgcataggcccagactcaagcttacaatcctc
t
actgtgcagaccaggttgatctcaaactcatgttgaacctcctgcttctg
gctcttgagtgctaggatgtggtggttcaaataggaatggtcgtcagaga
ctatgtttaatactcggtccccagttggtggacatgcttgggaaagattg
gtgggtattgtgtagctggtcttagcctctttgtgggttcttcctttttt
tttttttcatccttcttgactcttcaactccctaacactaaataagagag
ggggggcggggaaagggtagggatcagaggaaagagatccttgaatcttt
aaagacaggggccagaaaggggatgaccttatctgccgcagtctccaata
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94540459_94541600
seq2: B6Ng01-184B20.b_44_1193 (reverse)

seq1  GAGGATTGTAAGTTTGAGTCTGGG-CTATACAGTAAAATCTTGCTTCAAA  49
      |||||||||||| ||||||||||| |||| ||   ||||| |||||| ||
seq2  GAGGATTGTAAGCTTGAGTCTGGGCCTATGCAAGTAAATCCTGCTTC-AA  49

seq1  GCCATCTCCC-AACTGC-AAGATAATGAA-ACAAATATTTCTAAAAATCC  96
      | |||||||| |||||| |||||||||||  ||| |||||||||||||||
seq2  GGCATCTCCCAAACTGCAAAGATAATGAAGCCAATTATTTCTAAAAATCC  99

seq1  CTGTAGCTATCAAAA--GAATAAAGTAATACTATGAACAACTCTGAGCAT  144
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CTGTAGCTATCAAAAAGAAATAAAGTAATACTATGAACAACTCTGAGCAT  149

seq1  AAATTTGATCACTTAGATTAAATGAACCAATTCCTAAAAATGAGAGAGAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATCACTTAGATTAAATGAACCAATTCCTAAAAATGAGAGAGAA  199

seq1  AACAACAAATTAAAA-CCTCTACCACTATGAG-CCACTGAATCCAAAATG  242
      ||| ||||||||||| |||||||||||||||| |||||||||||||||||
seq2  AAC-ACAAATTAAAACCCTCTACCACTATGAGCCCACTGAATCCAAAATG  248

seq1  -AATGTGAGACTATAGCTCCTGAGAATGCCAGGAT-ATAATCTGAACTCT  290
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATGTGAGACTATAGCTCCTGAGAATGCCAGGATAATAATCTGAACTCT  298

seq1  CACAGCAGAACTAACTCACCAGGCCTGAGGAGTTCTCTCCACTCTATCAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAACTAACTCACCAGGCCTGAGGAGTTCTCTCCACTCTATCAG  348

seq1  CTCACAGACTGTTCAGGAAGTAGTGCCAATTCCATCCAGTCCCACCCAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACTGTTCAGGAAGTAGTGCCAATTCCATCCAGTCCCACCCAGA  398

seq1  GAGCAGATGACAGTGCTTTCACTTGATGTTACATGTATGGTGCTCTGCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATGACAGTGCTTTCACTTGATGTTACATGTATGGTGCTCTGCCT  448

seq1  GCCCTACATCAGTCTACCATGTGCATACATGATAACCAAGGAAGCCAGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACATCAGTCTACCATGTGCATACATGATAACCAAGGAAGCCAGGA  498

seq1  TACTTCACCACCATGCGGGTGGTGGGAGTCAAACCCAGGTCCTCTGGAAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACCACCATGCGGGTGGTGGGAGTCAAACCCAGGTCCTCTGGAAG  548

seq1  AGCAGTGCTCTGGCAGCTGAGTCATCTCTCTAACCCTGGGAACTGTTAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTCTGGCAGCTGAGTCATCTCTCTAACCCTGGGAACTGTTAAA  598

seq1  TTTGTAAATCCATTATGTTAGAACATTATTCAGCAATAAAAAGAAACAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATCCATTATGTTAGAACATTATTCAGCAATAAAAAGAAACAAA  648

seq1  TACTGATAAATGTTCTAGAAATCTCCAGAAAATTACAAGTAGGAAAAAAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATAAATGTTCTAGAAATCTCCAGAAAATTACAAGTAGGAAAAAAT  698

seq1  TAAAAAAAAAAAAAAGGTAGATGCCATACGAGTTCATTTATGTATTATTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAGGTAGATGCCATACGAGTTCATTTATGTATTATTC  748

seq1  TTGAATGAATGAGAAAAAAAATGGAGACACCCTCTTCTTTTCACAGCCTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAATGAGAAAAAAAATGGAGACACCCTCTTCTTTTCACAGCCTG  798

seq1  TGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTA  848

seq1  CAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAAT  898

seq1  ACTGAAGCTGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGA  948

seq1  ATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGC  998

seq1  CACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCACAGCG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCACAGCG  1048

seq1  GGGCTGGACAGGATTGTTTGCTAAAAACACTGCTACAGTTTTGTTGCACA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGACAGGATTGTTTGCTAAAAACACTGCTACAGTTTTGTTGCACA  1098

seq1  TGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAAT  1148

seq1  TC  1142
      ||
seq2  TC  1150