BAC Information

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BAC

Clone NameB6Ng01-185N17
Chromosome3 (Build37)
Map Location 25,920,271 - 25,921,325
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185N17.bB6Ng01-185N17.g
ACCGA010854GA010855
length9481,067
definitionB6Ng01-185N17.b B6Ng01-185N17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaattcaggtgacagta
gatgctggccaggatgtggagaaagaggaacgctcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcag
aaaattggacatagtactactggaggatcccgcaatacctctcctgggca
tagacccagaagatgttccaacttgtaataaggacacatgctccattatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
ccccttaaaagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattagaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggaggacatcatcctgagtgaggtaacccaatcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaatttgctaaatgcatgaaactcaac
aagaacaaagaccaaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacaaagtttggagctgtgacgaaagga
tgggaccattttagagactgccatatctgggtatccattccataatcagc
ttccaaacgctgacaccatttgcatacactatcaagattttgctgaaagg
acccagatatagctgtctcttgtgaagactaagccagcgccttagcaaac
acggaagtggatgctcacagtcagctattggatggatcacagggcctc

gaattctttctttccgtaacttttggatatatgttagttcctccttaaat
tacgactgtttgccttagtaaggtgtttttcatttttaaatactgtcctt
gctgaaagttaagaatgtcaataagtattatgattggcaggagctaaaaa
tttctcctaaaaatcagatttgataactaacaaaaacctatagattcttc
ttgaattcatacattcaagtatattttgatttcagaattaagtgttaagt
actacccacgaaaccatggaggtcctgttatactttgcagtgtaagtact
tttaagtagcacaaggtctttcaggataattagcacagaatattgaaccc
tgccagaaatacaggattcgtcattaaatttcgaggctgctttatctctc
tgagtctaatcatgtgtgcagaagactaattgttaatggcatggtcttta
ttgctcatggctttcttttattttaaatggaatggtctgctttgtgagaa
ataattaggttttataggcctacctacatgaagtcttttgttgatgtctt
atggttttgccaattcagatcctgagagcaattagagactggggtggaac
tgtcccttaaatcacacacatattgtgttatcgcctcctttaatatttac
acgcagtgccagacacgggagcttcacttatttgcaaatacacagagtga
ttttttaggatcttattttgagaaacataaggaccagttagggtcttgag
catgctatataagactggcagatggcaatgccttgatatctgacattttc
cctaagtataaagcaactttatagtttcttattttaaatatggtcaggag
ctagttgaggtaggtcagtggttagtgttttgaccagaagttttgtacct
ggggcatcacaaaaggtcaatgtaaaagttattgacttagtgctggttgc
tagccatggtctgtatgtatggatctgttcaatggaattgtctatgtttt
cattgtcagcttgtaaattacttgctgcttcagtgaagttaaaataaaga
aaccatattttgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25920271_25921325
seq2: B6Ng01-185N17.g_68_1134 (reverse)

seq1  TTTCTCAAAAT-TG--TTC-TTATTT--ACTTCACTG-AGCAGCAAGTAA  43
      ||||||||||| ||  ||| ||||||  ||||||||| ||||||||||||
seq2  TTTCTCAAAATATGGTTTCTTTATTTTAACTTCACTGAAGCAGCAAGTAA  50

seq1  TTTAC-AGCTGACAATGAAAAACATAGACAATTCCATTTGAACAGATCCA  92
      ||||| ||||||||||| |||||||||||||||||| |||||||||||||
seq2  TTTACAAGCTGACAATG-AAAACATAGACAATTCCA-TTGAACAGATCCA  98

seq1  TACATACAAGACCATGGCTAGCAACCAGCACT-AGTC-ATAACTTTTACA  140
      ||||||| |||||||||||||||||||||||| |||| ||||||||||||
seq2  TACATAC-AGACCATGGCTAGCAACCAGCACTAAGTCAATAACTTTTACA  147

seq1  TTGA-CTTTTGTGATG-CCCAGGTAC-AAACTTCTGGTC-AAACACT-AC  185
      |||| ||||||||||| ||||||||| |||||||||||| ||||||| ||
seq2  TTGACCTTTTGTGATGCCCCAGGTACAAAACTTCTGGTCAAAACACTAAC  197

seq1  CACTGACCTACCTC-ACTAGCTCCTGACCATATTTTAAAATAAGAAACTA  234
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CACTGACCTACCTCAACTAGCTCCTGACCATA-TTTAAAATAAGAAACTA  246

seq1  TAAAGTTGCTTTATACTTAGGGAAAATGTCAGATATCAAGGCATTGCCAT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGCTTTATACTTAGGGAAAATGTCAGATATCAAGGCATTGCCAT  296

seq1  CTGCCAGTCTTATATAGCATGCTCAAGACCCTAACTGGTCCTTATGTTTC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTCTTATATAGCATGCTCAAGACCCTAACTGGTCCTTATGTTTC  346

seq1  TCAAAATAAGATCCTAAAAAATCACTCTGTGTATTTGCAAATAAGTGAAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAGATCCTAAAAAATCACTCTGTGTATTTGCAAATAAGTGAAG  396

seq1  CTCCCGTGTCTGGCACTGCGTGTAAATATTAAAGGAGGCGATAACACAAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTGTCTGGCACTGCGTGTAAATATTAAAGGAGGCGATAACACAAT  446

seq1  ATGTGTGTGATTTAAGGGACAGTTCCACCCCAGTCTCTAATTGCTCTCAG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGATTTAAGGGACAGTTCCACCCCAGTCTCTAATTGCTCTCAG  496

seq1  GATCTGAATTGGCAAAACCATAAGACATCAACAAAAGACTTCATGTAGGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAATTGGCAAAACCATAAGACATCAACAAAAGACTTCATGTAGGT  546

seq1  AGGCCTATAAAACCTAATTATTTCTCACAAAGCAGACCATTCCATTTAAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATAAAACCTAATTATTTCTCACAAAGCAGACCATTCCATTTAAA  596

seq1  ATAAAAGAAAGCCATGAGCAATAAAGACCATGCCATTAACAATTAGTCTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAGCCATGAGCAATAAAGACCATGCCATTAACAATTAGTCTT  646

seq1  CTGCACACATGATTAGACTCAGAGAGATAAAGCAGCCTCGAAATTTAATG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACATGATTAGACTCAGAGAGATAAAGCAGCCTCGAAATTTAATG  696

seq1  ACGAATCCTGTATTTCTGGCAGGGTTCAATATTCTGTGCTAATTATCCTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCCTGTATTTCTGGCAGGGTTCAATATTCTGTGCTAATTATCCTG  746

seq1  AAAGACCTTGTGCTACTTAAAAGTACTTACACTGCAAAGTATAACAGGAC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTTGTGCTACTTAAAAGTACTTACACTGCAAAGTATAACAGGAC  796

seq1  CTCCATGGTTTCGTGGGTAGTACTTAACACTTAATTCTGAAATCAAAATA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGTTTCGTGGGTAGTACTTAACACTTAATTCTGAAATCAAAATA  846

seq1  TACTTGAATGTATGAATTCAAGAAGAATCTATAGGTTTTTGTTAGTTATC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATGTATGAATTCAAGAAGAATCTATAGGTTTTTGTTAGTTATC  896

seq1  AAATCTGATTTTTAGGAGAAATTTTTAGCTCCTGCCAATCATAATACTTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATTTTTAGGAGAAATTTTTAGCTCCTGCCAATCATAATACTTA  946

seq1  TTGACATTCTTAACTTTCAGCAAGGACAGTATTTAAAAATGAAAAACACC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTCTTAACTTTCAGCAAGGACAGTATTTAAAAATGAAAAACACC  996

seq1  TTACTAAGGCAAACAGTCGTAATTTAAGGAGGAACTAACATATATCCAAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGGCAAACAGTCGTAATTTAAGGAGGAACTAACATATATCCAAA  1046

seq1  AGTTACGGAAAGAAAGAATTC  1055
      |||||||||||||||||||||
seq2  AGTTACGGAAAGAAAGAATTC  1067


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