BAC Information

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BAC

Clone NameB6Ng01-185P05
Chromosome3 (Build37)
Map Location 146,725,827 - 146,847,787
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genePpia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185P05.bB6Ng01-185P05.g
ACCGA010925GA010926
length1,1241,093
definitionB6Ng01-185P05.b B6Ng01-185P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,846,686 - 146,847,787)(146,725,827 - 146,726,911)
sequence
gaattcacccatcgagagcagcttcttcattctcaagaatgtcctacaga
aactcaaaggttgcgaacccagtggctaaaactcttcatactccagtaca
tctactgctgtcccactgaggaagagctgcttccattcttggcttgcatg
gtgactgggtctcacctcctcacatctctttactcagagacatttgcttc
catttctaagtctctcacaagagtgagtatgtacaattgattgactattt
ctgttcccctcaaattcctgtgttggatcactaatcccggtttggtggca
tctagacataaagtccttcaggaaggaattgagatataagggtgaaactc
tcaataaattgtataagtgagccgagaacaaaacctcagccatccatcgg
attagctttcttcctgccacttaaggataaaaagcacacaggttgtgcaa
accaggaagaggagcctgcaccacccagctcacatccgatttcaactctt
aacccgtaggaaggtgagaatagtgtgtgtgattggtgtttaaaccacca
agtctgtggtttcctattagagcagcctgaagtgattaaacagcatctat
attggcagaaactagttggtgtgtaaaacttccgcggcaaagtatctgac
ataatgtattccccgcgttttcaaacctctgtgcttttaagaatcaagct
gggcaatggttcaaatgggcactgaaagagcaaagcagcagagtgctaag
attccccctttcccgtggctcccattcagcccgccgagaacactgtgagg
aaggccttgatggctgaacagtaccctcatttgggtaacattcaggggaa
tactttttcttgctgatttccgttttacacaatgtgggctatttttcacc
agccaagttcaactttctggttcatgccacccctgggctctggagtcctc
tgctgcaatctttcttctttcttggggaaactcctccagtctttaccaca
actatgtggtgcaaacttccagcctcggtttcctcttgactgcaccaatg
gcttacccttgaggaatggcaactctgtataggcactctctcccattccc
agctccctcaggagctttcctttt
gaattcttcaggtcctgaagttgatgaaggtgaatactggttgtgattga
gaaacaactacgaggttaacttggacttcccaaagatctctttcaagctg
acccctaaagagttgtggatgtgaccgatggtatccagcactagttttga
gtgtctatcttatcaagatgaacagatttttctttcccggccaaaaacaa
acaaacaaacaaacaaacaaacaaatcaaccaaccccttgggatggggaa
taagactgactgtataagactgactgtatttataaccaaggcattctggc
agcgcatttaagttctgatattaatcagctttctcttggggaccacacct
aagagtgagcagagaagggtattaacattgcactgtactgccattcgata
tcaatctggctttataaagtaatccatcacatgaacagaggactaaattt
gaaaaggaaaacccacgagaaacttctctatgacactcaaattctaagac
ctaagacatgttctctggctccattctttgtactagacagccattaataa
acacaggtgatccccacaactttgagcacaaagtatagaccctgtgctgt
aaatctctcaagatatcatggggtccccattacaccagtttcatcctgat
ggggggatttctgacaaattctatggcaacctgacagatgtgatgtctaa
tctctttaagttcccaaaacacctggaaagtggactatttttaaagaaca
gactagaaagcaaatggtccttgtattgaacctttcccttccatgtctaa
gcagctcttcagaccttccctcctgcaccaggaaaagggctggcaagatg
ttcagcctgggcattgaaaccgtcataggagagcaggcaggcactaagct
ggcgtttccctgcagctaagccaaggaaagatgttgaatttacaggagtg
tgtgttttccccaccccaaacccgaagcactgcctaccaactttcagaac
accatgccaactgaactgtgcatcagggcatgcacgtcgtcagaacttcg
agaggtattgtcccgaccagaagctctgtaggtgaggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146846686_146847787
seq2: B6Ng01-185P05.b_43_1166 (reverse)

seq1  AAAAGG--AGC-CCTGA-GGAGCTGGGGATGGGAG-GAGTGCTTATACAG  45
      ||||||  ||| ||||| ||||||||| ||||||| |||||| |||||||
seq2  AAAAGGAAAGCTCCTGAGGGAGCTGGGAATGGGAGAGAGTGCCTATACAG  50

seq1  GGTTG-CATTCCTC-AGGGT-AGGCAATGGTGCAGTCAGGAGG--AGCGA  90
       |||| |||||||| ||||| || || ||||||||||| ||||  | |||
seq2  AGTTGCCATTCCTCAAGGGTAAGCCATTGGTGCAGTCAAGAGGAAACCGA  100

seq1  GGCTGG-AGTTTGCA-CACATAGTTGTGGTAAAGACTGG-GGAGTTT-CC  136
      |||||| |||||||| ||||||||||||||||||||||| ||||||| ||
seq2  GGCTGGAAGTTTGCACCACATAGTTGTGGTAAAGACTGGAGGAGTTTCCC  150

seq1  CAAGAAGAAAGAAAGATTGCAGCGGA-GACT-CAGAGCC--AGGGTGGCA  182
      ||||||  ||||||||||||||| || |||| |||||||   ||||||||
seq2  CAAGAAAGAAGAAAGATTGCAGCAGAGGACTCCAGAGCCCAGGGGTGGCA  200

seq1  TGAACCAG-AAGTTGAACTTGGCTGGTG-AAAATAGCCCACATTGTGTAA  230
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TGAACCAGAAAGTTGAACTTGGCTGGTGAAAAATAGCCCACATTGTGTAA  250

seq1  AACGGAAATCAGCAAG-AAAAGTATTCCCCTGAATGTTACCCAAATGAGG  279
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACGGAAATCAGCAAGAAAAAGTATTCCCCTGAATGTTACCCAAATGAGG  300

seq1  GTACTGTTCAGCCATCAAGGCCTTCCTCACAGTGTTCTCGGCGGGCTGAA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTTCAGCCATCAAGGCCTTCCTCACAGTGTTCTCGGCGGGCTGAA  350

seq1  TGGGAGCCACGGGAAAGGGGGAATCTTAGCACTCTGCTGCTTTGCTCTTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCACGGGAAAGGGGGAATCTTAGCACTCTGCTGCTTTGCTCTTT  400

seq1  CAGTGCCCATTTGAACCATTGCCCAGCTTGATTCTT-AAAGCACAGAGGT  428
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGTGCCCATTTGAACCATTGCCCAGCTTGATTCTTAAAAGCACAGAGGT  450

seq1  TTGAAAACGCGGGGAATACATTATGTCAGATACTTTGCCGCGGAAGTTTT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACGCGGGGAATACATTATGTCAGATACTTTGCCGCGGAAGTTTT  500

seq1  ACACACCAACTAGTTTCTGCCAATATAGATGCTGTTTAATCACTTCAGGC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAACTAGTTTCTGCCAATATAGATGCTGTTTAATCACTTCAGGC  550

seq1  TGCTCTAATAGGAAACCACAGACTTGGTGGTTTAAACACCAATCACACAC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAATAGGAAACCACAGACTTGGTGGTTTAAACACCAATCACACAC  600

seq1  ACTATTCTCACCTTCCTACGGGTTAAGAGTTGAAATCGGATGTGAGCTGG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTCACCTTCCTACGGGTTAAGAGTTGAAATCGGATGTGAGCTGG  650

seq1  GTGGTGCAGGCTCCTCTTCCTGGTTTGCACAACCTGTGTGCTTTTTATCC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAGGCTCCTCTTCCTGGTTTGCACAACCTGTGTGCTTTTTATCC  700

seq1  TTAAGTGGCAGGAAGAAAGCTAATCCGATGGATGGCTGAGGTTTTGTTCT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGCAGGAAGAAAGCTAATCCGATGGATGGCTGAGGTTTTGTTCT  750

seq1  CGGCTCACTTATACAATTTATTGAGAGTTTCACCCTTATATCTCAATTCC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCACTTATACAATTTATTGAGAGTTTCACCCTTATATCTCAATTCC  800

seq1  TTCCTGAAGGACTTTATGTCTAGATGCCACCAAACCGGGATTAGTGATCC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGGACTTTATGTCTAGATGCCACCAAACCGGGATTAGTGATCC  850

seq1  AACACAGGAATTTGAGGGGAACAGAAATAGTCAATCAATTGTACATACTC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGAATTTGAGGGGAACAGAAATAGTCAATCAATTGTACATACTC  900

seq1  ACTCTTGTGAGAGACTTAGAAATGGAAGCAAATGTCTCTGAGTAAAGAGA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTGAGAGACTTAGAAATGGAAGCAAATGTCTCTGAGTAAAGAGA  950

seq1  TGTGAGGAGGTGAGACCCAGTCACCATGCAAGCCAAGAATGGAAGCAGCT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAGGTGAGACCCAGTCACCATGCAAGCCAAGAATGGAAGCAGCT  1000

seq1  CTTCCTCAGTGGGACAGCAGTAGATGTACTGGAGTATGAAGAGTTTTAGC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGTGGGACAGCAGTAGATGTACTGGAGTATGAAGAGTTTTAGC  1050

seq1  CACTGGGTTCGCAACCTTTGAGTTTCTGTAGGACATTCTTGAGAATGAAG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTTCGCAACCTTTGAGTTTCTGTAGGACATTCTTGAGAATGAAG  1100

seq1  AAGCTGCTCTCGATGGGTGAATTC  1102
      ||||||||||||||||||||||||
seq2  AAGCTGCTCTCGATGGGTGAATTC  1124

seq1: chr3_146725827_146726911
seq2: B6Ng01-185P05.g_67_1159

seq1  GAATTCTTCAGGTCCTGAAGTTGATGAAGGTGAATACTGGTTGTGATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGTCCTGAAGTTGATGAAGGTGAATACTGGTTGTGATTGA  50

seq1  GAAACAACTACGAGGTTAACTTGGACTTCCCAAAGATCTCTTTCAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACTACGAGGTTAACTTGGACTTCCCAAAGATCTCTTTCAAGCTG  100

seq1  ACCCCTAAAGAGTTGTGGATGTGACCGATGGTATCCAGCACTAGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAAAGAGTTGTGGATGTGACCGATGGTATCCAGCACTAGTTTTGA  150

seq1  GTGTCTATCTTATCAAGATGAACAGATTTTTCTTTCCCGGCCAAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATCTTATCAAGATGAACAGATTTTTCTTTCCCGGCCAAAAACAA  200

seq1  ACAAACAAACAAACAAACAAACAAATCAACCAACCCCTTGGGATGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAATCAACCAACCCCTTGGGATGGGGAA  250

seq1  TAAGACTGACTGTATAAGACTGACTGTATTTATAACCAAGGCATTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGACTGTATAAGACTGACTGTATTTATAACCAAGGCATTCTGGC  300

seq1  AGCGCATTTAAGTTCTGATATTAATCAGCTTTCTCTTGGGGACCACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCATTTAAGTTCTGATATTAATCAGCTTTCTCTTGGGGACCACACCT  350

seq1  AAGAGTGAGCAGAGAAGGGTATTAACATTGCACTGTACTGCCATTCGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGAGCAGAGAAGGGTATTAACATTGCACTGTACTGCCATTCGATA  400

seq1  TCAATCTGGCTTTATAAAGTAATCCATCACATGAACAGAGGACTAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGGCTTTATAAAGTAATCCATCACATGAACAGAGGACTAAATTT  450

seq1  GAAAAGGAAAACCCACGAGAAACTTCTCTATGACACTCAAATTCTAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAAACCCACGAGAAACTTCTCTATGACACTCAAATTCTAAGAC  500

seq1  CTAAGACATGTTCTCTGGCTCCATTCTTTGTACTAGACAGCCATTAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACATGTTCTCTGGCTCCATTCTTTGTACTAGACAGCCATTAATAA  550

seq1  ACACAGGTGATCCCCACAACTTTGAGCACAAAGTATAGACCCTGTGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGATCCCCACAACTTTGAGCACAAAGTATAGACCCTGTGCTGT  600

seq1  AAATCTCTCAAGATATCATGGGGTCCCCATTACACCAGTTTCATCCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCAAGATATCATGGGGTCCCCATTACACCAGTTTCATCCTGAT  650

seq1  GGGGGGATTTCTGACAAATTCTATGGCAACCTGACAGATGTGATGTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATTTCTGACAAATTCTATGGCAACCTGACAGATGTGATGTCTAA  700

seq1  TCTCTTTAAGTTCCCAAAACACCTGGAAAGTGGACTATTTTTAAAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAAGTTCCCAAAACACCTGGAAAGTGGACTATTTTTAAAGAACA  750

seq1  GACTAGAAAGCAAATGGTCCTTGTATTGAACCTTTCCCTTCCATGTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAAGCAAATGGTCCTTGTATTGAACCTTTCCCTTCCATGTCTAA  800

seq1  GCAGCTCTTCAGACCTTCCCTCCTGCACCAGGAAAAGGGCTGGCAAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTTCAGACCTTCCCTCCTGCACCAGGAAAAGGGCTGGCAAGATG  850

seq1  -TCAGCCTGGGCATTGAAACCGTCATAGGAGAGCAGGCAGGCACT-AGCT  898
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCAGCCTGGGCATTGAAACCGTCATAGGAGAGCAGGCAGGCACTAAGCT  900

seq1  GGCGTTTCCCTGCAGCTAAGCC-AGGAAAGA-GGTGAATTTACAGGAGTG  946
      |||||||||||||||||||||| |||||||| | ||||||||||||||||
seq2  GGCGTTTCCCTGCAGCTAAGCCAAGGAAAGATGTTGAATTTACAGGAGTG  950

seq1  TGTG-TTTCCCCACCCCAAACCCGAAGCACTGCCTACCAAC-TTCAGAAC  994
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGTTTTCCCCACCCCAAACCCGAAGCACTGCCTACCAACTTTCAGAAC  1000

seq1  ACCATGCCAACTGAACTGTGGCAACA-GGCATGCACGTCGTCAG-ACCTC  1042
      ||||||||||||||||||| ||| || ||||||||||||||||| || ||
seq2  ACCATGCCAACTGAACTGT-GCATCAGGGCATGCACGTCGTCAGAACTTC  1049

seq1  GAGAAGTA-TGTCCCGGACCAGAGTCTCGGGAGGTGAGG-AGGAA  1085
      |||| ||| |||||| |||||||  ||| | |||||||| |||||
seq2  GAGAGGTATTGTCCC-GACCAGAAGCTCTGTAGGTGAGGAAGGAA  1093