BAC Information

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BAC

Clone NameB6Ng01-186F06
Chromosome3 (Build37)
Map Location 28,192,962 - 28,396,018
singlet/doubletdoublet
Overlap geneTnik
Upstream geneTnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186F06.bB6Ng01-186F06.g
ACCGA011201GA011202
length7521,127
definitionB6Ng01-186F06.b B6Ng01-186F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,192,962 - 28,193,713)(28,394,899 - 28,396,018)
sequence
gaattcagctagacttttcttttttcttttattttattttttaccatgag
ataaatttggggctcatttgtgaagttgtagctggtttcgtttctgttga
gccgccgaggtgattttgaatgcagatttagatgcagagtgatttagagg
gcccaccaaagtgagactctctggatcttagtatgggcattttagcttac
tgccttggttctcaatctctggtcacgacccctttgagggggtcacatat
tagataccctgcatatcagatacttgtattacaattacatagttgcaaag
tagcaatacaataatactatggttgggggtcaccactgcatgaggagctg
tttttaaggatctcagcattggaaggttgagaaccactggcttactggat
ttatggcctacagctagttgtataaaatctcttggtttttgttttttgtt
tttgtttttttttttttttttttttgtaatactggtgcagtggagctaac
aatatttgtagtagtaagactactgcaggagttaaaaattgatgttgcag
gacagctcttgccataaaaaaggcatataataatgtttaatatgttcaat
gtcggttttgttcttttttaaaaaaattaaaatttggggggaactttgtg
catagacactatgtatcacaccccctcatcagacgactcctgtgtccctc
ctccaaatcccatggcctcttctttcattctcatgtgtgtgtgtgtgtgt
gt

gaattcacaccataaagtgcctgttttatgtaatgggttggcactttgaa
acacagaatggtatttgctgtctattagccttggggcaattgggagaaaa
gctgtcaaatcatttttcaaagggcttacttgccaagagaaacccagttg
agaaaggctaactgtattcctttgtgtgaacctgcatatgctaggctaca
taattaagtaatagtttttactgcaagcaaggtggccagcactaactact
aaggatggttcttgaaacacttttaaaacctcacctagaaaatccaacac
tggggagagcaatattcatcatccttgattcccaccttcacaccaataaa
caattccatgcagtcctatccatgctgtcagtggatctcagctctcactc
tgcagagccgcacaacagaacctgagccacactgtggccatcttggatcc
atcacaactattggtccctaagctgccaagtgtatcttattatgaagaaa
aatgactcaatccaaggatgactgaatattatgacttcagcaaaactgcc
aaacaaattctgatttgttttgtagttggagctttgtaaaaaggcttata
tatatttatcacgagcttctcaatggaggctcacaatgctagattttgat
ctctgtgtcatatcctgctaattcactattccaacagctaaaccgttaat
tccgacttatagaagctatatttctctcttttctggtgatttcttacaag
tagaaagtgtagttagatcagacgtaacctacatatcctccatcctactc
atcctggaccccgcagaacctttttcttttttcttcttttaaaaaaataa
ttttaattaattctctgagagttttatacaacacatttccactattttca
ccccagtcactcccttaactctttctggatgcactcccacatccccatct
cctacttctgtctcctcttttaatttgaactatctataatctcttggatg
gtgggatcatcctccgaatgtggttggacctaccaggaagccacatcttt
caaggaaagctgactctctttcccagaaccagtcactatatataggtttc
cttagtcaggggtaggaggctccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28192962_28193713
seq2: B6Ng01-186F06.b_42_793

seq1  GAATTCAGCTAGACTTTTCTTTTTTCTTTTATTTTATTTTTTACCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAGACTTTTCTTTTTTCTTTTATTTTATTTTTTACCATGAG  50

seq1  ATAAATTTGGGGCTCATTTGTGAAGTTGTAGCTGGTTTCGTTTCTGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTGGGGCTCATTTGTGAAGTTGTAGCTGGTTTCGTTTCTGTTGA  100

seq1  GCCGCCGAGGTGATTTTGAATGCAGATTTAGATGCAGAGTGATTTAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGAGGTGATTTTGAATGCAGATTTAGATGCAGAGTGATTTAGAGG  150

seq1  GCCCACCAAAGTGAGACTCTCTGGATCTTAGTATGGGCATTTTAGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCAAAGTGAGACTCTCTGGATCTTAGTATGGGCATTTTAGCTTAC  200

seq1  TGCCTTGGTTCTCAATCTCTGGTCACGACCCCTTTGAGGGGGTCACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGTTCTCAATCTCTGGTCACGACCCCTTTGAGGGGGTCACATAT  250

seq1  TAGATACCCTGCATATCAGATACTTGTATTACAATTACATAGTTGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCCTGCATATCAGATACTTGTATTACAATTACATAGTTGCAAAG  300

seq1  TAGCAATACAATAATACTATGGTTGGGGGTCACCACTGCATGAGGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATACAATAATACTATGGTTGGGGGTCACCACTGCATGAGGAGCTG  350

seq1  TTTTTAAGGATCTCAGCATTGGAAGGTTGAGAACCACTGGCTTACTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGGATCTCAGCATTGGAAGGTTGAGAACCACTGGCTTACTGGAT  400

seq1  TTATGGCCTACAGCTAGTTGTATAAAATCTCTTGGTTTTTGTTTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCTACAGCTAGTTGTATAAAATCTCTTGGTTTTTGTTTTTTGTT  450

seq1  TTTGTTTTTTTTTTTTTTTTTTTTTGTAATACTGGTGCAGTGGAGCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTTTTTTTTTTTTGTAATACTGGTGCAGTGGAGCTAAC  500

seq1  AATATTTGTAGTAGTAAGACTACTGCAGGAGTTAAAAATTGATGTTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGTAGTAGTAAGACTACTGCAGGAGTTAAAAATTGATGTTGCAG  550

seq1  GACAGCTCTTGCCATAAAAAAGGCATATAATAATGTTTAATATGTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCTTGCCATAAAAAAGGCATATAATAATGTTTAATATGTTCAAT  600

seq1  GTCGGTTTTGTTCTTTTTTAAAAAAATTAAAATTTGGGGGGAACTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTTTTGTTCTTTTTTAAAAAAATTAAAATTTGGGGGGAACTTTGTG  650

seq1  CATAGACACTATGTATCACACCCCCTCATCAGACGACTCCTGTGTCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACACTATGTATCACACCCCCTCATCAGACGACTCCTGTGTCCCTC  700

seq1  CTCCAAATCCCATGGCCTCTTCTTTCATTCTCATGTGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATCCCATGGCCTCTTCTTTCATTCTCATGTGTGTGTGTGTGTGT  750

seq1  GT  752
      ||
seq2  GT  752


seq1: chr3_28394899_28396018
seq2: B6Ng01-186F06.g_64_1190 (reverse)

seq1  CCATTGAGCCT-CTACCCCTGACTAAG--AAACTATATATAGTTGATGGT  47
      |||| |||||| |||||||||||||||  || |||||||||| |||  | 
seq2  CCATGGAGCCTCCTACCCCTGACTAAGGAAACCTATATATAG-TGACTGG  49

seq1  TTCTGGGGAAAGGAGAGTCAGC-TTCCTTGAAGGATGTGGC-TCCTGGTA  95
      |||||||  || |||||||||| ||||||||| |||||||| ||||||||
seq2  TTCTGGG--AAAGAGAGTCAGCTTTCCTTGAAAGATGTGGCTTCCTGGTA  97

seq1  GGTCC-ACCACATTTCGGAAGATGATCCCA-CATCCAAGAGATTATAGAT  143
      ||||| |||||| |||||| |||||||||| |||||||||||||||||||
seq2  GGTCCAACCACA-TTCGGAGGATGATCCCACCATCCAAGAGATTATAGAT  146

seq1  AGTACAAATTAAAAAGAGGAGACAGAAGTAGGAGATGGGGATGTGGGAGT  193
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATT-AAAAGAGGAGACAGAAGTAGGAGATGGGGATGTGGGAGT  195

seq1  GCATCCAGAAAGAGTTAAGGGAGTGACTGGGGTG-AAATAGTGG-AATGT  241
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GCATCCAGAAAGAGTTAAGGGAGTGACTGGGGTGAAAATAGTGGAAATGT  245

seq1  GTTGTATAAAACTCTCAGAGAATTAATT-AAATTATTTTTTTAAAAGAAG  290
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTGTATAAAACTCTCAGAGAATTAATTAAAATTATTTTTTTAAAAGAAG  295

seq1  AAAAA--GAAAAGGTTCTGCGGGGTCCAGGATGAGTAGGATGGAGGATAT  338
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAGGTTCTGCGGGGTCCAGGATGAGTAGGATGGAGGATAT  345

seq1  GTAGGTTACGTCTGATCTAACTACACTTTCTACTTGTAAGAAATCACCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTACGTCTGATCTAACTACACTTTCTACTTGTAAGAAATCACCAG  395

seq1  AAAAGAGAGAAATATAGCTTCTATAAGTCGGAATTAACGGTTTAGCTGTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAAATATAGCTTCTATAAGTCGGAATTAACGGTTTAGCTGTT  445

seq1  GGAATAGTGAATTAGCAGGATATGACACAGAGATCAAAATCTAGCATTGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTGAATTAGCAGGATATGACACAGAGATCAAAATCTAGCATTGT  495

seq1  GAGCCTCCATTGAGAAGCTCGTGATAAATATATATAAGCCTTTTTACAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCATTGAGAAGCTCGTGATAAATATATATAAGCCTTTTTACAAA  545

seq1  GCTCCAACTACAAAACAAATCAGAATTTGTTTGGCAGTTTTGCTGAAGTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACTACAAAACAAATCAGAATTTGTTTGGCAGTTTTGCTGAAGTC  595

seq1  ATAATATTCAGTCATCCTTGGATTGAGTCATTTTTCTTCATAATAAGATA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTCAGTCATCCTTGGATTGAGTCATTTTTCTTCATAATAAGATA  645

seq1  CACTTGGCAGCTTAGGGACCAATAGTTGTGATGGATCCAAGATGGCCACA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCAGCTTAGGGACCAATAGTTGTGATGGATCCAAGATGGCCACA  695

seq1  GTGTGGCTCAGGTTCTGTTGTGCGGCTCTGCAGAGTGAGAGCTGAGATCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTCAGGTTCTGTTGTGCGGCTCTGCAGAGTGAGAGCTGAGATCC  745

seq1  ACTGACAGCATGGATAGGACTGCATGGAATTGTTTATTGGTGTGAAGGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGCATGGATAGGACTGCATGGAATTGTTTATTGGTGTGAAGGTG  795

seq1  GGAATCAAGGATGATGAATATTGCTCTCCCCAGTGTTGGATTTTCTAGGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAGGATGATGAATATTGCTCTCCCCAGTGTTGGATTTTCTAGGT  845

seq1  GAGGTTTTAAAAGTGTTTCAAGAACCATCCTTAGTAGTTAGTGCTGGCCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTAAAAGTGTTTCAAGAACCATCCTTAGTAGTTAGTGCTGGCCA  895

seq1  CCTTGCTTGCAGTAAAAACTATTACTTAATTATGTAGCCTAGCATATGCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTGCAGTAAAAACTATTACTTAATTATGTAGCCTAGCATATGCA  945

seq1  GGTTCACACAAAGGAATACAGTTAGCCTTTCTCAACTGGGTTTCTCTTGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACACAAAGGAATACAGTTAGCCTTTCTCAACTGGGTTTCTCTTGG  995

seq1  CAAGTAAGCCCTTTGAAAAATGATTTGACAGCTTTTCTCCCAATTGCCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAGCCCTTTGAAAAATGATTTGACAGCTTTTCTCCCAATTGCCCC  1045

seq1  AAGGCTAATAGACAGCAAATACCATTCTGTGTTTCAAAGTGCCAACCCAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAATAGACAGCAAATACCATTCTGTGTTTCAAAGTGCCAACCCAT  1095

seq1  TACATAAAACAGGCACTTTATGGTGTGAATTC  1120
      ||||||||||||||||||||||||||||||||
seq2  TACATAAAACAGGCACTTTATGGTGTGAATTC  1127


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