BAC Information

Click to search

BAC

Clone NameB6Ng01-186M04
Chromosome3 (Build37)
Map Location 16,299,181 - 16,497,873
singlet/doubletdoublet
Overlap geneLOC100040034
Upstream geneLOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186M04.bB6Ng01-186M04.g
ACCGA011519GA011520
length1,0751,169
definitionB6Ng01-186M04.b B6Ng01-186M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,496,782 - 16,497,873)(16,299,181 - 16,300,097)
sequence
gaattcaggatcttttcagactagcctggagacctgacaagaagccaggg
cctgcattctgaataggtgagaacatcagtgaagaaaatggaagaagggc
atcagaaaatgagaaataaggaaaaaaaaaaaaaaacacagcagtgtaga
aggagaaacagaaagccacagcctagaatatcttcctggttctattgatg
cctttctcctaggctgggctttctgggaactatagcctgaaacaggttaa
tgttctccttgttgcctctacactgcatctctgggcactattcaccatag
tgatgcattaatgaagtggcatgtactgttagaccttatcttcagtcctt
agcacacataatgaaaccactttctttgacccacagcatatttacagccc
ctttctctatgtgtatactcttttcctctttctagcactttcattgttct
ctccccaccacaatgatgtatgtgaggctggttgttaccattgtctcatc
ttcttgtctatattcatcagcatgtaatatcactccactgcacaaatgaa
gcattcattagaaaatatcacacacccctctttcaggcagccaaacctat
ccaatagccatgccttgaaaaatcccttctggagacaagttctcttgttt
gcaaccagcaaaaataatgccttcagaaccttatacagtttccctaaaca
gactttatgctgactttgagagtaaagagatcatttacccttcattggct
atttcttcttagggctccctctcttattaaacaatgagaaaagctgcata
tccttcaagatggatgaacagagaatgaatgtgagtagatcctcctcatg
gcctctattctttttccttgtgatttattcagatgtgcatattatttagt
cctgtcctggggaacagcctcactctgatctcatgctgccctctatcttt
ctgtttattgccaaagatctgcaagttttctcttcttttctttttcttta
cgttttttcttattttataagcaaaagatatctaaatactttttaaaagt
gttatttgagtcatgaaagtaaatc
gaattctacctatttgattgtgttttcctgtttttctttaaggacttgta
actctttagcagtgttctcctgtatttctttaagtgaattattaaagtcc
ttcttgatgtcctctatcatcatcatgagatatgcttttaaatctgggtc
taggttttcgggtgtgttggggtgccctggactgggcgaggtgggagtgc
tgggttctgatgatggtgagtggtcttggttcctgttagtaagattccta
tgtttacctttcgccatctggtaatctctggagttagttgttatagttga
ctctgtttagagattgttcttctggtgattctgttactgtctatcagcag
acctgggagacagattctctcctctgagtttcagtgctcatagcactctc
tgctggcaagctctcttacagggaacgtgcgcagatatcttgtgtttgga
cctcctcctggccgaagataaaggcccaaaacaggacctttttcagaagc
tgtgttgctttggcaggtcccagaagctgtcagcttctgtggtgcagact
ctcacctgtgcagactaaattcctaagttccggagagtcctggaaccaag
gtgctgcacgctgctcctgaggctgaggccttccgagccaggcggacacc
tgtcctctggtccggacggtggccggctgtctgcagcccgcaaagggtgc
tgcctcagcggctctgtgcctccgcctgtcccagaagctgtccggttctg
tccatatttttttcaaatgcaccaataatgataaccattgctgtatatta
tttttctactttaataattttgtgataatttcataatctatttttatcta
atctggctttatttttttaatctgtgaacttatctaattttttattttta
tcaaaaggcaacctataaatggatagaccaaatttaggaaaataattctg
aagctaatgtttacatttctattttcaactgaggatgtctttgagaagat
atatgtgcagtttgttaccaacatcactgcctgtctatagaagataatgt
atattatcttggcattttctcatagcatgccagttttaacttaatatcct
tggccaaactattattttgtgagaaaacagaaatcttatggtagggtaat
gacataatttcttctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16496782_16497873
seq2: B6Ng01-186M04.b_43_1117 (reverse)

seq1  GATTTACCTTTCATGACTTCAAAATAACACTTTTTAAAAAAGTATTTTAA  50
      |||||| |||||||||||   |||||||||||||  |||||||||||  |
seq2  GATTTA-CTTTCATGACT--CAAATAACACTTTT--AAAAAGTATTT--A  43

seq1  GATATCTTTTTGGCTTATTAAAAATAAAGAAAAAACGTAAAAGAAAAAGG  100
      ||||||||||  ||||||  ||||| |||||||||||| ||||||||| |
seq2  GATATCTTTT--GCTTAT--AAAAT-AAGAAAAAACGT-AAAGAAAAA-G  86

seq1  AAAAGAAGAAGAAAAACTTGCAGGATCTTTGGCAATAAACAGAAAGATAG  150
      |||||||||   |||||||||| |||||||||||||||||||||||||||
seq2  AAAAGAAGA--GAAAACTTGCA-GATCTTTGGCAATAAACAGAAAGATAG  133

seq1  AGGGCAGCATGAGATCAGAGTGAGGCTGTTCCCCAGGACAGGACTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCATGAGATCAGAGTGAGGCTGTTCCCCAGGACAGGACTAAATA  183

seq1  ATATGCACATCTGAATAAATCACAAGGAAAAAGAATAGAGGCCATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATCTGAATAAATCACAAGGAAAAAGAATAGAGGCCATGAGGA  233

seq1  GGATCTACTCACATTCATTCTCTGTTCATCCATCTTGAAGGATATGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACTCACATTCATTCTCTGTTCATCCATCTTGAAGGATATGCAGC  283

seq1  TTTTCTCATTGTTTAATAAGAGAGGGAGCCCTAAGAAGAAATAGCCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATTGTTTAATAAGAGAGGGAGCCCTAAGAAGAAATAGCCAATG  333

seq1  AAGGGTAAATGATCTCTTTACTCTCAAAGTCAGCATAAAGTCTGTTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAATGATCTCTTTACTCTCAAAGTCAGCATAAAGTCTGTTTAGG  383

seq1  GAAACTGTATAAGGTTCTGAAGGCATTATTTTTGCTGGTTGCAAACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTATAAGGTTCTGAAGGCATTATTTTTGCTGGTTGCAAACAAGA  433

seq1  GAACTTGTCTCCAGAAGGGATTTTTCAAGGCATGGCTATTGGATAGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTCTCCAGAAGGGATTTTTCAAGGCATGGCTATTGGATAGGTTT  483

seq1  GGCTGCCTGAAAGAGGGGTGTGTGATATTTTCTAATGAATGCTTCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTGAAAGAGGGGTGTGTGATATTTTCTAATGAATGCTTCATTTG  533

seq1  TGCAGTGGAGTGATATTACATGCTGATGAATATAGACAAGAAGATGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGAGTGATATTACATGCTGATGAATATAGACAAGAAGATGAGAC  583

seq1  AATGGTAACAACCAGCCTCACATACATCATTGTGGTGGGGAGAGAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAACAACCAGCCTCACATACATCATTGTGGTGGGGAGAGAACAAT  633

seq1  GAAAGTGCTAGAAAGAGGAAAAGAGTATACACATAGAGAAAGGGGCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCTAGAAAGAGGAAAAGAGTATACACATAGAGAAAGGGGCTGTA  683

seq1  AATATGCTGTGGGTCAAAGAAAGTGGTTTCATTATGTGTGCTAAGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTGTGGGTCAAAGAAAGTGGTTTCATTATGTGTGCTAAGGACTG  733

seq1  AAGATAAGGTCTAACAGTACATGCCACTTCATTAATGCATCACTATGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGGTCTAACAGTACATGCCACTTCATTAATGCATCACTATGGTG  783

seq1  AATAGTGCCCAGAGATGCAGTGTAGAGGCAACAAGGAGAACATTAACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGCCCAGAGATGCAGTGTAGAGGCAACAAGGAGAACATTAACCTG  833

seq1  TTTCAGGCTATAGTTCCCAGAAAGCCCAGCCTAGGAGAAAGGCATCAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCTATAGTTCCCAGAAAGCCCAGCCTAGGAGAAAGGCATCAATA  883

seq1  GAACCAGGAAGATATTCTAGGCTGTGGCTTTCTGTTTCTCCTTCTACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGAAGATATTCTAGGCTGTGGCTTTCTGTTTCTCCTTCTACACT  933

seq1  GCTGTGTTTTTTTTTTTTTTTCCTTATTTCTCATTTTCTGATGCCCTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTTTTTTTTTTTTTTCCTTATTTCTCATTTTCTGATGCCCTTCT  983

seq1  TCCATTTTCTTCACTGATGTTCTCACCTATTCAGAATGCAGGCCCTGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTTCACTGATGTTCTCACCTATTCAGAATGCAGGCCCTGGCT  1033

seq1  TCTTGTCAGGTCTCCAGGCTAGTCTGAAAAGATCCTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAGGTCTCCAGGCTAGTCTGAAAAGATCCTGAATTC  1075

seq1: chr3_16299181_16300097
seq2: B6Ng01-186M04.g_314_1232

seq1  TGTTTACCTTTCGCCATCTGGTAATCTCTGGAGTTAGTTGTTATAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCTTTCGCCATCTGGTAATCTCTGGAGTTAGTTGTTATAGTTGA  50

seq1  CTCTGTTTAGAGATTGTTCTTCTGGTGATTCTGTTACTGTCTATCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTAGAGATTGTTCTTCTGGTGATTCTGTTACTGTCTATCAGCAG  100

seq1  ACCTGGGAGACAGATTCTCTCCTCTGAGTTTCAGTGCTCATAGCACTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGACAGATTCTCTCCTCTGAGTTTCAGTGCTCATAGCACTCTC  150

seq1  TGCTGGCAAGCTCTCTTACAGGGAACGTGCGCAGATATCTTGTGTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCAAGCTCTCTTACAGGGAACGTGCGCAGATATCTTGTGTTTGGA  200

seq1  CCTCCTCCTGGCCGAAGATAAAGGCCCAAAACAGGACCTTTTTCAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTGGCCGAAGATAAAGGCCCAAAACAGGACCTTTTTCAGAAGC  250

seq1  TGTGTTGCTTTGGCAGGTCCCAGAAGCTGTCAGCTTCTGTGGTGCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCTTTGGCAGGTCCCAGAAGCTGTCAGCTTCTGTGGTGCAGACT  300

seq1  CTCACCTGTGCAGACTAAATTCCTAAGTTCCGGAGAGTCCTGGAACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGTGCAGACTAAATTCCTAAGTTCCGGAGAGTCCTGGAACCAAG  350

seq1  GTGCTGCACGCTGCTCCTGAGGCTGAGGCCTTCCGAGCCAGGCGGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCACGCTGCTCCTGAGGCTGAGGCCTTCCGAGCCAGGCGGACACC  400

seq1  TGTCCTCTGGTCCGGACGGTGGCCGGCTGTCTGCAGCCCGCAAAGGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTGGTCCGGACGGTGGCCGGCTGTCTGCAGCCCGCAAAGGGTGC  450

seq1  TGCCTCAGCGGCTCTGTGCCTCCGCCTGTCCCAGAAGCTGTCCGGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGCGGCTCTGTGCCTCCGCCTGTCCCAGAAGCTGTCCGGTTCTG  500

seq1  TCCATATTTTTTTCAAATGCACCAATAATGATAACCATTGCTGTATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTTTTTCAAATGCACCAATAATGATAACCATTGCTGTATATTA  550

seq1  TTTTTCTACTTTAATAATTTTGTGATAATTTCATAATCTATTTTTATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACTTTAATAATTTTGTGATAATTTCATAATCTATTTTTATCTA  600

seq1  ATCTGGCTTTATTTTTT--ATCTGTGAACTTATCTAATTTTTTATTTTTA  648
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  ATCTGGCTTTATTTTTTTAATCTGTGAACTTATCTAATTTTTTATTTTTA  650

seq1  TC-AAAGGCAACCTATAAATGGATAGACCAAA-TTAGGAAAATAATTCTG  696
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAAAAGGCAACCTATAAATGGATAGACCAAATTTAGGAAAATAATTCTG  700

seq1  AAGCTAATGTTTACATTTCTATTTTCAACTGAGGATGTCTTTTGAGAAGA  746
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGCTAATGTTTACATTTCTATTTTCAACTGAGGATGTC-TTTGAGAAGA  749

seq1  TATATGTGCAGTGTGTTACCAACATCACTGCCTGTCTATAAGAGATAATG  796
      |||||||||||| |||||||||||||||||||||||||||  ||||||||
seq2  TATATGTGCAGTTTGTTACCAACATCACTGCCTGTCTATAGAAGATAATG  799

seq1  TATATAATCTT-GCATTTCTTCATAGGCATG-CAGTTTT-ACTTAATATC  843
      ||||| ||||| ||||||  ||||| ||||| ||||||| ||||||||||
seq2  TATATTATCTTGGCATTTTCTCATA-GCATGCCAGTTTTAACTTAATATC  848

seq1  C-TGGCCAAAAAAAAATATTATTTTGTGAGAAAAACACAG-AATCTTAT-  890
      | |||||     ||| |||||||||||||||||   |||| |||||||| 
seq2  CTTGGCC-----AAACTATTATTTTGTGAGAAA---ACAGAAATCTTATG  890

seq1  GTA-GGTGATTACATAATTTC-TCTCAAA  917
      ||| ||| || |||||||||| |||||||
seq2  GTAGGGTAATGACATAATTTCTTCTCAAA  919