BAC Information

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BAC

Clone NameB6Ng01-186N20
Chromosome3 (Build37)
Map Location 122,696,372 - 122,865,635
singlet/doubletdoublet
Overlap geneMyoz2, Synpo2
Upstream geneArhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186N20.bB6Ng01-186N20.g
ACCGA011598GA011599
length1,142734
definitionB6Ng01-186N20.b B6Ng01-186N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,696,372 - 122,697,514)(122,864,909 - 122,865,635)
sequence
gaattcatcatgaattatttattgtgtctagtttgtttttgattttgttt
tttgagatagggtctcttttctggaactcactatgtaggctaggatagcc
tcaaccacacagatctgctgtttcctagtgctgggattaaaggcgtgcac
cactgtacttagctatccgtaattcttaactgcttgtgctattgaaatgc
tcatcttcctgtgaaacaaaccctaaacctgaatacttttaaacctgagg
agaagcactagccagctgctcacaagtaatactcccagatattttgtaca
cttcaaaatgaaagttttctggttaaatagcattatataggtttgtgttc
tgctcatgtttcaaattactttttttttttagcagttctgggtcaaattt
tttttatgttactaactatcaaactagaataattttaatgaaatagacac
gatttaagttgctaaaaacaaagttggcatctaaaatttgaagaactact
agcagatttcagacattttatactacagcctagaatagactactttgtca
ctcattacacacaaatatgcttaaaagtgaacccagaatttcatggacta
ttattttgactattagatatttattttgatactctattataagataaatc
tgtgatcataaccaaccaaattgagatctaggctcctttgaaaaacataa
tagacatggatcaacagatttttattaagtaaagcaagattcctcttttt
tataatacagaatagaaatttattcctgtccagttaggaaaatactcact
gtggttcatgtattaacccattttctatttatataacagagtatttgagg
ttaggtattttatagggggaaaatgtttgtttctcttacagtcttgaaac
ccaagaataacgtcaggcagccttgtctatttcattgcctgggttgatgg
aataacaactatggtaacagccctagagagttcgtgtactccagaaacaa
tagaggacttccagccccaggctgctctttgtatagtctgattctctgac
taactgacatcctatgaaggctacataatcttcgtttgtctaggtttacc
tgccttggaagagataccatgaaccaacgcccacctcttata
gaattctctgagatttcagtctgggcttggaggaaaaaaatctctctggg
gtttcagcctggctaaaagaagctagaacaaagcaggccagctacagaaa
atgaagccaagaggtcccattgggggcctaatgtgtgttctttaaagaag
aaagaatttgctcctggggtcaggagattgtcaggaagcccttgaagttg
ctaatgctgatcagacctgctgggggccagacagatgagccagtccagag
gcaagggctctggcattgccgatctcccagtctccttttctcccagaggt
cactgtcaaaccagaagctcctgacagggtttgcagtatacagggttata
tcaacacctctaactcagtggggaaagggaggggtgcattcgccaggctt
tgcaaaggtctgagtgtattttcagtcctttttagtaaaatcccttcctg
gggtattctaggaaagaagggagctaactttgtgagggtttgcaagcctc
atggggagcagggtcccctacctactttgggggacagagtggaagagaaa
atgggatgacagacccacccttgtggtggtgttttgtttcggtggtgtta
atgttcttctttggtttgctttttttgagacaaggtcttactatgaattc
atgctggcatcgaacacatcgtggtgcctagggcttggcatcaacttctt
gatccttccctcctcaggcgcccaagttgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122696372_122697514
seq2: B6Ng01-186N20.b_50_1191

seq1  GAATTCATCATGAATTATTTATTGTGTCTAGTTTGTTTTTGATTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGAATTATTTATTGTGTCTAGTTTGTTTTTGATTTTGTTT  50

seq1  TTTGAGATAGGGTCTCTTTTCTGGAACTCACTATGTAGGCTAGGATAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAGGGTCTCTTTTCTGGAACTCACTATGTAGGCTAGGATAGCC  100

seq1  TCAACCACACAGATCTGCTGTTTCCTAGTGCTGGGATTAAAGGCGTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACACAGATCTGCTGTTTCCTAGTGCTGGGATTAAAGGCGTGCAC  150

seq1  CACTGTACTTAGCTATCCGTAATTCTTAACTGCTTGTGCTATTGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACTTAGCTATCCGTAATTCTTAACTGCTTGTGCTATTGAAATGC  200

seq1  TCATCTTCCTGTGAAACAAACCCTAAACCTGAATACTTTTAAACCTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCCTGTGAAACAAACCCTAAACCTGAATACTTTTAAACCTGAGG  250

seq1  AGAAGCACTAGCCAGCTGCTCACAAGTAATACTCCCAGATATTTTGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACTAGCCAGCTGCTCACAAGTAATACTCCCAGATATTTTGTACA  300

seq1  CTTCAAAATGAAAGTTTTCTGGTTAAATAGCATTATATAGGTTTGTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATGAAAGTTTTCTGGTTAAATAGCATTATATAGGTTTGTGTTC  350

seq1  TGCTCATGTTTCAAATTACTTTTTTTTTTTAGCAGTTCTGGGTCAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGTTTCAAATTACTTTTTTTTTTTAGCAGTTCTGGGTCAAATTT  400

seq1  TTTTTATGTTACTAACTATCAAACTAGAATAATTTTAATGAAATAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTACTAACTATCAAACTAGAATAATTTTAATGAAATAGACAC  450

seq1  GATTTAAGTTGCTAAAAACAAAGTTGGCATCTAAAATTTGAAGAACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGTTGCTAAAAACAAAGTTGGCATCTAAAATTTGAAGAACTACT  500

seq1  AGCAGATTTCAGACATTTTATACTACAGCCTAGAATAGACTACTTTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTTCAGACATTTTATACTACAGCCTAGAATAGACTACTTTGTCA  550

seq1  CTCATTACACACAAATATGCTTAAAAGTGAACCCAGAATTTCATGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACACACAAATATGCTTAAAAGTGAACCCAGAATTTCATGGACTA  600

seq1  TTATTTTGACTATTAGATATTTATTTTGATACTCTATTATAAGATAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGACTATTAGATATTTATTTTGATACTCTATTATAAGATAAATC  650

seq1  TGTGATCATAACCAACCAAATTGAGATCTAGGCTCCTTTGAAAAACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCATAACCAACCAAATTGAGATCTAGGCTCCTTTGAAAAACATAA  700

seq1  TAGACATGGATCAACAGATTTTTATTAAGTAAAGCAAGATTCCTCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGGATCAACAGATTTTTATTAAGTAAAGCAAGATTCCTCTTTTT  750

seq1  TATAATACAGAATAGAAATTTATTCCTGTCCAGTTAGGAAAATACTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACAGAATAGAAATTTATTCCTGTCCAGTTAGGAAAATACTCACT  800

seq1  GTGGTTCATGTATTAACCCATTTTCTATTTATATAACAGAGTATTTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCATGTATTAACCCATTTTCTATTTATATAACAGAGTATTTGAGG  850

seq1  TTAGGTATTTTATA-GGGGAAAATGTTTGTTTCTCTTACAGTCTTGAAAC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAGGTATTTTATAGGGGGAAAATGTTTGTTTCTCTTACAGTCTTGAAAC  900

seq1  CCAAGAATAAACGTCAGGCAGCCTTGTCTA-TTCATTGCCTGGGTTGATG  948
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CCAAGAAT-AACGTCAGGCAGCCTTGTCTATTTCATTGCCTGGGTTGATG  949

seq1  GAATAACAACTATGGTAACAG-CCTAGAGGAGATCGTGTAC-CCAGAAAC  996
      ||||||||||||||||||||| |||||| ||| |||||||| ||||||||
seq2  GAATAACAACTATGGTAACAGCCCTAGA-GAGTTCGTGTACTCCAGAAAC  998

seq1  AATAGA-GAC-TCAGGCCCCAGGCCTGCTCCTTTTGTATAGTCTGATTTC  1044
      |||||| ||| ||  |||||||| ||||||  |||||||||||||| |||
seq2  AATAGAGGACTTCCAGCCCCAGG-CTGCTC--TTTGTATAGTCTGA-TTC  1044

seq1  TCTGGAACTAACTGACATCTTATGAAAGCTACATTAATC-TCGTTTGTCT  1093
      ||||  ||||||||||||| |||||| |||||| ||||| ||||||||||
seq2  TCTG--ACTAACTGACATCCTATGAAGGCTACA-TAATCTTCGTTTGTCT  1091

seq1  TAGGGTTTACCTTGCTGTGAAGAGATACCATG-ACCAAGG--CAACTCTT  1140
         |||||||||  ||  |||||||||||||| ||||| |  || |||||
seq2  --AGGTTTACCTGCCTTGGAAGAGATACCATGAACCAACGCCCACCTCTT  1139

seq1  ATA  1143
      |||
seq2  ATA  1142

seq1: chr3_122864909_122865635
seq2: B6Ng01-186N20.g_66_799 (reverse)

seq1  CCCAGC-ACTTGGGCGCCTGAGGAGGG-AGGATC-AGAGTTTGATGCCA-  46
      |||||| |||||||||||||||||||| |||||| |||  ||||||||| 
seq2  CCCAGCAACTTGGGCGCCTGAGGAGGGAAGGATCAAGAAGTTGATGCCAA  50

seq1  -GCCTGGGCACCACGATGTGTTCGATGCCAGCATGAATTCATAGTAAGAC  95
        ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGGCACCACGATGTGTTCGATGCCAGCATGAATTCATAGTAAGAC  100

seq1  CTTGTCTC--AAAAAGCAAACCAAAGAAGAACATTAACACCACCGAAACA  143
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCAAAAAAAGCAAACCAAAGAAGAACATTAACACCACCGAAACA  150

seq1  AAACACCACCACAAGGGTGGGTCTGTCATCCCATTTTCTCTTCCACTCTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCACCACAAGGGTGGGTCTGTCATCCCATTTTCTCTTCCACTCTG  200

seq1  TCCCCCAAAGTAGGTAGGGGACCCTGCTCCCCATGAGGCTTGCAAACCCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAAAGTAGGTAGGGGACCCTGCTCCCCATGAGGCTTGCAAACCCT  250

seq1  CACAAAGTTAGCTCCCTTCTTTCCTAGAATACCCCAGGAAGGGATTTTAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTAGCTCCCTTCTTTCCTAGAATACCCCAGGAAGGGATTTTAC  300

seq1  TAAAAAGGACTGAAAATACACTCAGACCTTTGCAAAGCCTGGCGAATGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGACTGAAAATACACTCAGACCTTTGCAAAGCCTGGCGAATGCA  350

seq1  CCCCTCCCTTTCCCCACTGAGTTAGAGGTGTTGATATAACCCTGTATACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTTTCCCCACTGAGTTAGAGGTGTTGATATAACCCTGTATACT  400

seq1  GCAAACCCTGTCAGGAGCTTCTGGTTTGACAGTGACCTCTGGGAGAAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCTGTCAGGAGCTTCTGGTTTGACAGTGACCTCTGGGAGAAAAG  450

seq1  GAGACTGGGAGATCGGCAATGCCAGAGCCCTTGCCTCTGGACTGGCTCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGGAGATCGGCAATGCCAGAGCCCTTGCCTCTGGACTGGCTCAT  500

seq1  CTGTCTGGCCCCCAGCAGGTCTGATCAGCATTAGCAACTTCAAGGGCTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGCCCCCAGCAGGTCTGATCAGCATTAGCAACTTCAAGGGCTTC  550

seq1  CTGACAATCTCCTGACCCCAGGAGCAAATTCTTTCTTCTTTAAAGAACAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATCTCCTGACCCCAGGAGCAAATTCTTTCTTCTTTAAAGAACAC  600

seq1  ACATTAGGCCCCCAATGGGACCTCTTGGCTTCATTTTCTGTAGCTGGCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGCCCCCAATGGGACCTCTTGGCTTCATTTTCTGTAGCTGGCCT  650

seq1  GCTTTGTTCTAGCTTCTTTTAGCCAGGCTGAAACCCCAGAGAGATTTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTCTAGCTTCTTTTAGCCAGGCTGAAACCCCAGAGAGATTTTTT  700

seq1  TCCTCCAAGCCCAGACTGAAATCTCAGAGAATTC  727
      ||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGCCCAGACTGAAATCTCAGAGAATTC  734