BAC Information

Click to search

BAC

Clone NameB6Ng01-187C12
Chromosome3 (Build37)
Map Location 109,956,141 - 109,956,903
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a24, Vav3, Ntng1, LOC100043181
Downstream geneLOC100043183, Prmt6, LOC100043190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187C12.bB6Ng01-187C12.g
ACCGA011807GA011808
length1,222763
definitionB6Ng01-187C12.b B6Ng01-187C12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaatatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctctatatctattcaacattg
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atataaattagaaaaaaagaaatcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcgggtgaagtgggtggatataaaattaactcaaacaa
gtcaatggcctttctctacacaaagaataaacaggctgagaaataaatta
gggaaacaatacccttctcaatagtcacaaataatataaaatatcttggc
atgactctaactaaggaagtgaaagatctgtatgataagaacacaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatctgcaaattcatctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggtggaatca
ccatgcctgacctaaagctgtactacagagcaattgtgataaaaactgca
tggtactggtatagcgacagacaagtagaccaatggaatagattgaagac
ccagaaatgaacccacacacctatggtcacttgatctttgataaagggag
ataaaaccatccactggaaaaaggacatcattttcaacaaatggtgctgg
cacaactggtggttatcatgtagaagaatacaaattgatccatttcctat
ctccttgtactaaggtcaaatctaagtgggatcaggagttccacataaaa
ccagagaccactgaaacttatagagagaaagtggggcaaagcccttgaga
tatgcagagggcaaaaatctgaatagaagcattggcttgttgctgtaaga
ctggaattgacaatggacctcaataaaaactggccaagcatctctgtaag
tccaaaggaacaccctctcgtg

gaattcccattattcctgttacagctgaagacattgggctgagaatgctt
aaacccataaaccaaggctgtacatacccctctctgtaaggccatgagtc
aagaatttgaactctggtctttgacacatgccagtatagtagataacatt
tcacaataactctgaatgaaactcatggaaatatatttataaatctgcac
agaaaataaattatctttgaattttcatggaagaaatagtcttaaagaat
caaagtaaagagacatcagatgctaggacaatgagataatactgagattt
ctcataaaaattacttatagaagctagaaccctaggacagtggaaactcc
tgggaatgcacgagggtgaccctggctaagacccctagtgatgggggtat
ggagtctgaaatagctatttcttgtaagcaggtaaaacttccagtggaag
gattgggacatcaatggagccacagaaccttagaaccacaatttttcctg
cctgaaagaagtacaggggtgaaagatgaaccagaaattaagggaatggc
caaccaatgactggcccagcttgagacccatgccatgaaaaagagatcac
tccagacactactaatgacattctgctatatttgcagacaggaacgtagc
ataactgtcatcagagaagcttcacccagcaaccaataaagaaacagatt
cagagacccacagtcaaatattaaggagaacatgggaaatcctggggagg
agggggaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109956141_109956903
seq2: B6Ng01-187C12.g_61_823

seq1  GAATTCCCATTATTCCTGTTACAGCTGAAGACATTGGGCTGAGAATGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTATTCCTGTTACAGCTGAAGACATTGGGCTGAGAATGCTT  50

seq1  AAACCCATAAACCAAGGCTGTACATACCCCTCTCTGTAAGGCCATGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATAAACCAAGGCTGTACATACCCCTCTCTGTAAGGCCATGAGTC  100

seq1  AAGAATTTGAACTCTGGTCTTTGACACATGCCAGTATAGTAGATAACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGAACTCTGGTCTTTGACACATGCCAGTATAGTAGATAACATT  150

seq1  TCACAATAACTCTGAATGAAACTCATGGAAATATATTTATAAATCTGCAC  200
      |||||||||||||                  |||||||||||||||||||
seq2  TCACAATAACTCTNNNNNNNNNNNNNNNNNNTATATTTATAAATCTGCAC  200

seq1  AGAAAATAAATTATCTTTGAATTTTCATGGAAGAAATAGTCTTAAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAATTATCTTTGAATTTTCATGGAAGAAATAGTCTTAAAGAAT  250

seq1  CAAAGTAAAGAGACATCAGATGCTAGGACAATGAGATAATACTGAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAAGAGACATCAGATGCTAGGACAATGAGATAATACTGAGATTT  300

seq1  CTCATAAAAATTACTTATAGAAGCTAGAACCCTAGGACAGTGGAAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAAATTACTTATAGAAGCTAGAACCCTAGGACAGTGGAAACTCC  350

seq1  TGGGAATGCACGAGGGTGACCCTGGCTAAGACCCCTAGTGATGGGGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGCACGAGGGTGACCCTGGCTAAGACCCCTAGTGATGGGGGTAT  400

seq1  GGAGTCTGAAATAGCTATTTCTTGTAAGCAGGTAAAACTTCCAGTGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGAAATAGCTATTTCTTGTAAGCAGGTAAAACTTCCAGTGGAAG  450

seq1  GATTGGGACATCAATGGAGCCACAGAACCTTAGAACCACAATTTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGACATCAATGGAGCCACAGAACCTTAGAACCACAATTTTTCCTG  500

seq1  CCTGAAAGAAGTACAGGGGTGAAAGATGAACCAGAAATTAAGGGAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGAAGTACAGGGGTGAAAGATGAACCAGAAATTAAGGGAATGGC  550

seq1  CAACCAATGACTGGCCCAGCTTGAGACCCATGCCATGAAAAAGAGATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATGACTGGCCCAGCTTGAGACCCATGCCATGAAAAAGAGATCAC  600

seq1  TCCAGACACTACTAATGACATTCTGCTATATTTGCAGACAGGAACGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACACTACTAATGACATTCTGCTATATTTGCAGACAGGAACGTAGC  650

seq1  ATAACTGTCATCAGAGAAGCTTCACCCAGCAACCAATAAAGAAACAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTCATCAGAGAAGCTTCACCCAGCAACCAATAAAGAAACAGATT  700

seq1  CAGAGACCCACAGTCAAATATTAAGGAGAACATGGGAAATCCTGGGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCCACAGTCAAATATTAAGGAGAACATGGGAAATCCTGGGGAGG  750

seq1  AGGGGGAGGAAGA  763
      |||||||||||||
seq2  AGGGGGAGGAAGA  763


| Home | SequenceCutter | Blast | Download |