BAC Information

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BAC

Clone NameB6Ng01-187D19
Chromosome3 (Build37)
Map Location 110,808,806 - 110,941,621
singlet/doubletdoublet
Overlap geneLOC100043190
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC668712, LOC625585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187D19.bB6Ng01-187D19.g
ACCGA011865GA011866
length1,143408
definitionB6Ng01-187D19.b B6Ng01-187D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,940,518 - 110,941,621)(110,808,806 - 110,809,219)
sequence
gaattcacccgggacacaattcccaaattgcctattatacttttcaactt
aacttgaatgtctatttcttcaatggagaaaatgtattagttcagtctct
atgagccctcatgagcccaggttatagattttcctgacccttcagattcc
cacaatttttcctccccttcttccacaggagtcccaagctcaacctaatg
tttatctgtggatttctgcctctgtttccatcaactgctggatgaagctg
ctcagtgtcctctgagtgacaattatgctatacatacaagagtatcatga
atagtgtcctgagttggctgtgtcccatggggcatgtctcaatttgggcc
agttttcgtcggccatcccctcaaacgttgcttcatttttatccctgcac
atcttgtaggcaggataaattgtgggttgaagttttcgtgggtggattgg
tatcctgctccacagctggaattccttcctggctgcatgtggtgaccaca
ttagcctctatctcaccactgataggattctccatttcttagaagtaaag
atgcaggtggtcctgcatttgtttggaaaacatacagaacctctgagcta
ctacagtcttaaactgtctttggcaaagagaatgagagaacagggagttc
tttattctaattctactacatctgtgaaaaatatgtaagtttgaattatt
cactgtgtttgataatgatcttgtgaatggcagtgttatagatagctact
tgcattttacaggtagcttttgttttattgtttttctatgacacgttcaa
tgtgtaaattttctggtatttggccaattgctatgttgaagcagttcatt
aaatcagaaaatcccatgatttcttaataacattcataacatcaaaagag
caagcaggttaatttagatcagtagaatcagtgttactagaataacttca
atatgccatatcaaatgggctaggctaattagataaacttttattttctt
aactagtgtctatttggctcatctcatatatttgtaaagaacaaaacata
ttgggagaagttaaagaagatcttctaacattaaaagaaataatatgcaa
aatgtatatatatatattctaacctcaataccagtttcttttt

caatgatcaccagcaaatgaatgaatagaaacatctgaaccctgttgaat
ttgggaaggctgaaagaagctgagaagggcgattctgtaggaggaccagc
agtcttaattaatctggaccctgacatctctcaaacactgaaccaccaaa
caggcggcatacaccagctgcctgttatgaggccccaacacatatacaat
agaggactgcggggtctgtgttcattcagaaatgatgcaccttaccctca
agagacgtaagaggccctagggagtttagaggtcaggtggggtgggaggt
gtggacatctgcgtggagataggggatggggagaaggtatgggatatgga
ccagtcagagggtggatgagggaaaaaatatggagtgtaaattaattaat
tagtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110940518_110941621
seq2: B6Ng01-187D19.b_80_1189 (reverse)

seq1  AAAAAGAAAATGTAATGGAGGGTAGAATATATATATATACA-TTTGCATA  49
      ||||||||| ||  || |||| ||||||||||||||||||| ||||||||
seq2  AAAAAGAAACTGGTATTGAGGTTAGAATATATATATATACATTTTGCATA  50

seq1  TATATTTCTTTTAATGTTAG-AGATCTCTTTTAACTTCTCC--ATATG-T  95
      | |||||||||||||||||| ||||||  ||||||||||||  ||||| |
seq2  T-TATTTCTTTTAATGTTAGAAGATCTTCTTTAACTTCTCCCAATATGTT  99

seq1  TTGTTCTTTACAAATATATGAGATGAGCCAAATAGACACTAGTTAAGAAA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTACAAATATATGAGATGAGCCAAATAGACACTAGTTAAGAAA  149

seq1  ATAAAAGTTTATCTAATTAGCCTAG-CCATTTGATATGGCATATTG-AGT  193
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  ATAAAAGTTTATCTAATTAGCCTAGCCCATTTGATATGGCATATTGAAGT  199

seq1  TATTCTAGTAACACTGATTCTACTGATCTAAATTAACCTGCTTGCTCTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGTAACACTGATTCTACTGATCTAAATTAACCTGCTTGCTCTTT  249

seq1  TGATGTTATGAATGTTATTAAGAAATCATGGGATTTTCTGATTTAATGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTATGAATGTTATTAAGAAATCATGGGATTTTCTGATTTAATGAA  299

seq1  CTGCTTCAACATAGCAATTGGCCAAATACCAGAAAATTTACACATTGAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAACATAGCAATTGGCCAAATACCAGAAAATTTACACATTGAAC  349

seq1  GTGTCATAGAAAAACAATAAAACAAAAGCTACCTGTAAAATGCAAGTAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATAGAAAAACAATAAAACAAAAGCTACCTGTAAAATGCAAGTAGC  399

seq1  TATCTATAACACTGCCATTCACAAGATCATTATCAAACACAGTGAATAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAACACTGCCATTCACAAGATCATTATCAAACACAGTGAATAAT  449

seq1  TCAAACTTACATATTTTTCACAGATGTAGTAGAATTAGAATAAAGAACTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTACATATTTTTCACAGATGTAGTAGAATTAGAATAAAGAACTC  499

seq1  CCTGTTCTCTCATTCTCTTTGCCAAAGACAGTTTAAGACTGTAGTAGCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTCTCATTCTCTTTGCCAAAGACAGTTTAAGACTGTAGTAGCTC  549

seq1  AGAGGTTCTGTATGTTTTCCAAACAAATGCAGGACCACCTGCATCTTTAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTGTATGTTTTCCAAACAAATGCAGGACCACCTGCATCTTTAC  599

seq1  TTCTAAGAAATGGAGAATCCTATCAGTGGTGAGATAGAGGCTAATGTGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAAATGGAGAATCCTATCAGTGGTGAGATAGAGGCTAATGTGGT  649

seq1  CACCACATGCAGCCAGGAAGGAATTCCAGCTGTGGAGCAGGATACCAATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATGCAGCCAGGAAGGAATTCCAGCTGTGGAGCAGGATACCAATC  699

seq1  CACCCACGAAAACTTCAACCCACAATTTATCCTGCCTACAAGATGTGCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGAAAACTTCAACCCACAATTTATCCTGCCTACAAGATGTGCAG  749

seq1  GGATAAAAATGAAGCAACGTTTGAGGGGATGGCCGACGAAAACTGGCCCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAATGAAGCAACGTTTGAGGGGATGGCCGACGAAAACTGGCCCA  799

seq1  AATTGAGACATGCCCCATGGGACACAGCCAACTCAGGACACTATTCATGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGACATGCCCCATGGGACACAGCCAACTCAGGACACTATTCATGA  849

seq1  TACTCTTGTATGTATAGCATAATTGTCACTCAGAGGACACTGAGCAGCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGTATGTATAGCATAATTGTCACTCAGAGGACACTGAGCAGCTT  899

seq1  CATCCAGCAGTTGATGGAAACAGAGGCAGAAATCCACAGATAAACATTAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCAGTTGATGGAAACAGAGGCAGAAATCCACAGATAAACATTAG  949

seq1  GTTGAGCTTGGGACTCCTGTGGAAGAAGGGGAGGAAAAATTGTGGGAATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCTTGGGACTCCTGTGGAAGAAGGGGAGGAAAAATTGTGGGAATC  999

seq1  TGAAGGGTCAGGAAAATCTATAACCTGGGCTCATGAGGGCTCATAGAGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTCAGGAAAATCTATAACCTGGGCTCATGAGGGCTCATAGAGAC  1049

seq1  TGAACTAATACATTTTCTCCATTGAAGAAATAGACATTCAAGTTAAGTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAATACATTTTCTCCATTGAAGAAATAGACATTCAAGTTAAGTTG  1099

seq1  AAAAGTATAAT  1104
      |||||||||||
seq2  AAAAGTATAAT  1110


seq1: chr3_110808806_110809219
seq2: B6Ng01-187D19.g_61_474

seq1  GAATTCCAATGATCACCAGCAAATGAATGAATAGAAACATCTGAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGATCACCAGCAAATGAATGAATAGAAACATCTGAACCCTG  50

seq1  TTGAATTTGGGAAGGCTGAAAGAAGCTGAGAAGGGCGATTCTGTAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGGGAAGGCTGAAAGAAGCTGAGAAGGGCGATTCTGTAGGAGG  100

seq1  ACCAGCAGTCTTAATTAATCTGGACCCTGACATCTCTCAAACACTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGTCTTAATTAATCTGGACCCTGACATCTCTCAAACACTGAACC  150

seq1  ACCAAACAGGCGGCATACACCAGCTGCCTGTTATGAGGCCCCAACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGGCGGCATACACCAGCTGCCTGTTATGAGGCCCCAACACATA  200

seq1  TACAATAGAGGACTGCGGGGTCTGTGTTCATTCAGAAATGATGCACCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGAGGACTGCGGGGTCTGTGTTCATTCAGAAATGATGCACCTTA  250

seq1  CCCTCAAGAGACGTAAGAGGCCCTAGGGAGTTTAGAGGTCAGGTGGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGAGACGTAAGAGGCCCTAGGGAGTTTAGAGGTCAGGTGGGGTG  300

seq1  GGAGGTGTGGACATCTGCGTGGAGATAGGGGATGGGGAGAAGGTATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTGGACATCTGCGTGGAGATAGGGGATGGGGAGAAGGTATGGGA  350

seq1  TATGGACCAGTCAGAGGGTGGATGAGGGAAAAAATATGGAGTGTAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACCAGTCAGAGGGTGGATGAGGGAAAAAATATGGAGTGTAAATTA  400

seq1  ATTAATTAATTTCT  414
      |||||||| |||||
seq2  ATTAATTAGTTTCT  414


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