BAC Information

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BAC

Clone NameB6Ng01-187F03
Chromosome3 (Build37)
Map Location 112,623,921 - 112,732,152
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187F03.bB6Ng01-187F03.g
ACCGA011929GA011930
length1,1621,145
definitionB6Ng01-187F03.b B6Ng01-187F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,623,921 - 112,625,095)(112,731,008 - 112,732,152)
sequence
gaattccatatttttatatctaaatcaatttaactccttgttcataagta
tgaattttttaattgaataggcaagctaatctgtgcaaatatacctccaa
tcattacttttagtgaggattaattaatctgttacatcctttgaatccat
tttctttgtgcttacattgacagatattaatataactacttcagcttatt
ttcaggtttcatttttaaaatttcattttctgtcttttcacctattgtct
atgctagtggagtgtgtttattaaaaacaacaagccagatgtttttattt
tatgatcacctaaataaatctacatattttttggagagttacgactactt
acacttactattattactgaaaattgtataataattcctataattttgtt
ttattttcttgtagataatttcaatattgtttgctcctttcttatcttta
cccatgaaagtttcttggcttattaaacatttattatcaattttctcaat
gataattttaattattctgttgatattcattttacttctggtctagtgac
ctttattttttatcttttattcataaaatttccttagatgtccaatgtca
gcagactgaatggggtcttaccttgtcaagcctgtctagattagctatct
aggcaaaaaacagtggagacccaatgactacaaaaagactagccctcgag
ctgttgctagttcagaaagactgtgaaccattcaagttaatattattttg
tgccacaggaagtctgtgagtgcagatagaaatgtaaaaaatgcctggga
agagactttatttctagcaatgtcttttcaatgaggttagacatgataaa
aataaagcaatatgtagtggaagtcatgtttctcaacagctatctgggaa
ccacactgattcttggagtggtaaattacttaaccattaataagatggga
tgctgaaacttggcaataataaaaaatgcataagtcagtgtaattgcatg
tttaatggtgagaggaaacttctttcagatagtccccaccatagccacaa
tgatcagcctagactctagacgatctctgattatcactgcctggttagac
agcgatgctcatattaacctagagttggcagattgcagatacatgccgtt
gaacctcatgaa

gaattccaagttctttaaaagttaatgttcaacaactgcaaaaacaaagt
aacaacgtaatttaagtggatctatggaaaagcatctaataatcttttga
gattaccaaatagtaaaagaagataaaaatacccaaaagtgatggtttgt
attaagtacagaagctagctgtatttgcatgaacacttagcagcaaactt
aaagaaacacgtaaaggaaacaaatgcccaacgctccccatgcacccatt
ataatatggtacagaactcacacagttataacccctgaagttacatagac
atgatcaatgtaatgtgatagtgttcaaccatatcagagaagtatctctg
aattattctgctaacaatgaaggaacagtaaagattattttctcaggatt
ttattgggtttaagaataaagtgtagttccttaggtccacctcaaagtct
agagaattttattcatacaatcacctggcactgactgaatagtatacttt
actaaatctgtcctctaataattttaggacaccaaacattgtggttttgt
atccaggtcttgtttcatgtcatctcaaaatcatcttcctttcattactt
ctactatagtacttggtattaaattcttaagaaataaactgacccatgcc
tacgtatcttatataactgcctaccaataggaaacaagtcaattaaagaa
tgactatacaattgtgtgattgcatcttccttaatataacttaaaaatca
ttttccagtagagctcaaggtctttcattcatggaaaagtcttatctttc
cgagatgatattagaagcacatcatattcatacattttccagaaattatc
ttatcatatttacagtaaagtataagattttctaaaataaacttgtatta
tttgctgtgtaaaactaaatacttccttcagctattctcatttaaagctt
tcaactgttgtggatatgtctctggatgtaaataagaacaaaataatgtt
gtaactatactgatatatcattactaccactgctattattctagtctgag
atggactattatttctgtgatttgacataacaaagccatatattgtccta
ctaggaatgtgatatggaacaggaattttaagaatgcattatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112623921_112625095
seq2: B6Ng01-187F03.b_48_1209

seq1  GAATTCCATATTTTTATATCTAAATCAATTTAACTCCTTGTTCATAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTTTTATATCTAAATCAATTTAACTCCTTGTTCATAAGTA  50

seq1  TGAATTTTTTAATTGAATAGGCAAGCTAATCTGTGCAAATATACCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTAATTGAATAGGCAAGCTAATCTGTGCAAATATACCTCCAA  100

seq1  TCATTACTTTTAGTGAGGATTAATTAATCTGTTACATCCTTTGAATCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTTTTAGTGAGGATTAATTAATCTGTTACATCCTTTGAATCCAT  150

seq1  TTTCTTTGTGCTTACATTGACAGATATTAATATAACTACTTCAGCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTGCTTACATTGACAGATATTAATATAACTACTTCAGCTTATT  200

seq1  TTCAGGTTTCATTTTTAAAATTTCATTTTCTGTCTTTTCACCTATTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTCATTTTTAAAATTTCATTTTCTGTCTTTTCACCTATTGTCT  250

seq1  ATGCTAGTGGAGTGTGTTTATTAAAAACAACAAGCCAGATGTTTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTGGAGTGTGTTTATTAAAAACAACAAGCCAGATGTTTTTATTT  300

seq1  TATGATCACCTAAATAAATCTACATATTTTTTGGAGAGTTACGACTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCACCTAAATAAATCTACATATTTTTTGGAGAGTTACGACTACTT  350

seq1  ACACTTACTATTATTACTGAAAATTGTATAATAATTCCTATAATTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACTATTATTACTGAAAATTGTATAATAATTCCTATAATTTTGTT  400

seq1  TTATTTTCTTGTAGATAATTTCAATATTGTTTGCTCCTTTCTTATCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTGTAGATAATTTCAATATTGTTTGCTCCTTTCTTATCTTTA  450

seq1  CCCATGAAAGTTTCTTGGCTTATTAAACATTTATTATCAATTTTCTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAAGTTTCTTGGCTTATTAAACATTTATTATCAATTTTCTCAAT  500

seq1  GATAATTTTAATTATTCTGTTGATATTCATTTTACTTCTGGTCTAGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTAATTATTCTGTTGATATTCATTTTACTTCTGGTCTAGTGAC  550

seq1  CTTTATTTTTTATCTTTTATTCATAAAATTTCCTTAGATGTCCAATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTTTATCTTTTATTCATAAAATTTCCTTAGATGTCCAATGTCA  600

seq1  GCAGACTGAATGGGGTCTTACCTTGTCAAGCCTGTCTAGATTAGCTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGAATGGGGTCTTACCTTGTCAAGCCTGTCTAGATTAGCTATCT  650

seq1  AGGCAAAAAACAGTGGAGACCCAATGACTACAAAAAGACTAGCCCTCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAAACAGTGGAGACCCAATGACTACAAAAAGACTAGCCCTCGAG  700

seq1  CTGTTGCTAGTTCAGAAAGACTGTGAACCATTCAAGTTAATATTATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTAGTTCAGAAAGACTGTGAACCATTCAAGTTAATATTATTTTG  750

seq1  TGCCACAGGAAGTCTGTGAGTGCAGATAGAAATGTAAAAAATGCCTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGGAAGTCTGTGAGTGCAGATAGAAATGTAAAAAATGCCTGGGA  800

seq1  AGAGACTTTATTTCTAGCAATGTCTTTTCAATGAGGTTAGACATGATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTTATTTCTAGCAATGTCTTTTCAATGAGGTTAGACATGATAAA  850

seq1  AATAAAGCAATATGTAGTGGAAGTCATGTTTCTCAACAGCTATCTGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAATATGTAGTGGAAGTCATGTTTCTCAACAGCTATCTGGGAA  900

seq1  CCACACTGATTCTTGGAGTGGTAAATTACTTAACCATTAATAAGAAGGGG  950
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  CCACACTGATTCTTGGAGTGGTAAATTACTTAACCATTAATAAG-ATGGG  949

seq1  ATGCTGAAACTTGGCAATA--TAAAAATGCATAAGTCAGTGTAATTTGCA  998
      |||||||||||||||||||   |||||||||||||||||||||| |||||
seq2  ATGCTGAAACTTGGCAATAATAAAAAATGCATAAGTCAGTGTAA-TTGCA  998

seq1  TGTTTAATGGTGAGAGGAAACTTCTTTCAAGATAGTTCCCCACCATAGCA  1048
      |||||||||||||||||||||||||||| |||||| ||||||||||||| 
seq2  TGTTTAATGGTGAGAGGAAACTTCTTTC-AGATAG-TCCCCACCATAGCC  1046

seq1  CAAATGATCAGGCTAGGAACTCTAGGACGATCCTTCTGGATTATCAACTG  1098
        ||||||||| ||||  |||||| |||||||  ||| ||||||| ||||
seq2  ACAATGATCAGCCTAG--ACTCTA-GACGATC--TCT-GATTATC-ACTG  1089

seq1  GCTGTGTAGACAGCAGATGGCTCATAATAAACTAGAGTTTGCAGAATTGC  1148
       |||  |||||||| ||| ||||||| ||| |||||||| |||| |||||
seq2  CCTGGTTAGACAGC-GAT-GCTCATATTAACCTAGAGTTGGCAG-ATTGC  1136

seq1  AGATTTTACATGC--TTGGAACTCATGAA  1175
      |||   |||||||  ||| | ||||||||
seq2  AGA---TACATGCCGTTGAACCTCATGAA  1162


seq1: chr3_112731008_112732152
seq2: B6Ng01-187F03.g_66_1210 (reverse)

seq1  CACATAAATTCCATCTTAAAAATTCTGTT-CATATTCACA-TCCTAGTAG  48
      ||||| ||| |  |||||||| | ||||| |||| ||||| |||||||||
seq2  CACAT-AATGCATTCTTAAAATTCCTGTTCCATA-TCACATTCCTAGTAG  48

seq1  GGCATAATATGGCTTTGTTATGTCAAATCACAGAAATAATAGTCCATCTT  98
      | ||  |||||||||||||||||||||||||||||||||||||||||| |
seq2  GACAATATATGGCTTTGTTATGTCAAATCACAGAAATAATAGTCCATC-T  97

seq1  CAGACTAAGAT-ATAGCAGTGGTAGTAATGAATATATCAGTATAGTTACA  147
      |||||||  || |||||||||||||||||| |||||||||||||||||||
seq2  CAGACTAGAATAATAGCAGTGGTAGTAATG-ATATATCAGTATAGTTACA  146

seq1  ACATTA-TTTGTTCTTATTTACATCCAGAGACATATCCACAACAGTTGAA  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTTGTTCTTATTTACATCCAGAGACATATCCACAACAGTTGAA  196

seq1  AGCTTTAAATGAGAATAGCTGAAGGAAGTATTTAGTTTTACACAGCAAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAATGAGAATAGCTGAAGGAAGTATTTAGTTTTACACAGCAAAT  246

seq1  AATACAAGTTTATTTTAGAAAATCTTATACTTTACTGTAAATATGATAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGTTTATTTTAGAAAATCTTATACTTTACTGTAAATATGATAAG  296

seq1  ATAATTTCTGGAAAATGTATGAATATGATGTGCTTCTAATATCATCTCGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTGGAAAATGTATGAATATGATGTGCTTCTAATATCATCTCGG  346

seq1  AAAGATAAGACTTTTCCATGAATGAAAGACCTTGAGCTCTACTGGAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAGACTTTTCCATGAATGAAAGACCTTGAGCTCTACTGGAAAAT  396

seq1  GATTTTTAAGTTATATTAAGGAAGATGCAATCACACAATTGTATAGTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAGTTATATTAAGGAAGATGCAATCACACAATTGTATAGTCAT  446

seq1  TCTTTAATTGACTTGTTTCCTATTGGTAGGCAGTTATATAAGATACGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTGACTTGTTTCCTATTGGTAGGCAGTTATATAAGATACGTAG  496

seq1  GCATGGGTCAGTTTATTTCTTAAGAATTTAATACCAAGTACTATAGTAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTCAGTTTATTTCTTAAGAATTTAATACCAAGTACTATAGTAGA  546

seq1  AGTAATGAAAGGAAGATGATTTTGAGATGACATGAAACAAGACCTGGATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGAAAGGAAGATGATTTTGAGATGACATGAAACAAGACCTGGATA  596

seq1  CAAAACCACAATGTTTGGTGTCCTAAAATTATTAGAGGACAGATTTAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCACAATGTTTGGTGTCCTAAAATTATTAGAGGACAGATTTAGTA  646

seq1  AAGTATACTATTCAGTCAGTGCCAGGTGATTGTATGAATAAAATTCTCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACTATTCAGTCAGTGCCAGGTGATTGTATGAATAAAATTCTCTA  696

seq1  GACTTTGAGGTGGACCTAAGGAACTACACTTTATTCTTAAACCCAATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAGGTGGACCTAAGGAACTACACTTTATTCTTAAACCCAATAAA  746

seq1  ATCCTGAGAAAATAATCTTTACTGTTCCTTCATTGTTAGCAGAATAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGAAAATAATCTTTACTGTTCCTTCATTGTTAGCAGAATAATTC  796

seq1  AGAGATACTTCTCTGATATGGTTGAACACTATCACATTACATTGATCATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACTTCTCTGATATGGTTGAACACTATCACATTACATTGATCATG  846

seq1  TCTATGTAACTTCAGGGGTTATAACTGTGTGAGTTCTGTACCATATTATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAACTTCAGGGGTTATAACTGTGTGAGTTCTGTACCATATTATA  896

seq1  ATGGGTGCATGGGGAGCGTTGGGCATTTGTTTCCTTTACGTGTTTCTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGCATGGGGAGCGTTGGGCATTTGTTTCCTTTACGTGTTTCTTTA  946

seq1  AGTTTGCTGCTAAGTGTTCATGCAAATACAGCTAGCTTCTGTACTTAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGCTAAGTGTTCATGCAAATACAGCTAGCTTCTGTACTTAATA  996

seq1  CAAACCATCACTTTTGGGTATTTTTATCTTCTTTTACTATTTGGTAATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATCACTTTTGGGTATTTTTATCTTCTTTTACTATTTGGTAATCT  1046

seq1  CAAAAGATTATTAGATGCTTTTCCATAGATCCACTTAAATTACGTTGTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATTATTAGATGCTTTTCCATAGATCCACTTAAATTACGTTGTTA  1096

seq1  CTTTGTTTTTGCAGTTGTTGAACATTAACTTTTAAAGAACTTGGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTGCAGTTGTTGAACATTAACTTTTAAAGAACTTGGAATTC  1145


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