BAC Information

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BAC

Clone NameB6Ng01-187I04
Chromosome3 (Build37)
Map Location 158,484,670 - 158,639,262
singlet/doubletdoublet
Overlap geneLOC668905
Upstream geneLOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7, LOC100041008
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187I04.bB6Ng01-187I04.g
ACCGA012071GA012072
length9511,102
definitionB6Ng01-187I04.b B6Ng01-187I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,484,670 - 158,485,632)(158,638,147 - 158,639,262)
sequence
gaattcatatctcagtgataattttgaaacagaatgcagtctcctaaata
gcatttaagagtctatttatttatcactttgtttttgatggcagagtaac
attctcaatattcatgttttaaagataaatatggtattaaatagaatgct
ttgacctatattttatgtagatccgcttctggaaattatagaacaattta
cagtgcttattcatccttggtggctgtagattgaggatgtgcctgtgaac
tacactggggttatggggaggcttccagccatcaggccatttggtgctgt
gattatctttattctgcatgaccatatttcattttagtaacatcccagat
agacagtgcttacagaaactgttcctcccttgcttataaaatctttgggc
tggattcactgaaaaagatttttttttatgatcagtcaatattttgattt
gccaaaaaaaaaaaatgctaacagagtttaagttcctggaagaaagaaac
cacagtaactttaagaggctagtatcttggatgagttctaggccttccaa
agagctattccttatccacctgatttggaattaatatcttgtgcctaaca
attaaaaccattttgaattaacttccaccaacccaaaagatcttgggttt
atagaaaagcttccctagccgggcagtggtgggtgcatgcctttaatccc
agtatttgggagacagaggcaggtgaatttctgagtttgaggccagccct
tgtctacagaatgagtcccaggacagccagggctattacagagaaaccct
gtttcaaaaaatccaacctactaccatctaatcgaaccaaactaaacaaa
tgttccctcatttcctgtactgcccttgaatatacccccaatgtatgtaa
actgaattttatttatgacttcctttgtctgtaaacttttataaattgat
t
gaattcatatgctttattgaggcaaaccaagaattatataattttgggaa
aagctgtgagactatccaggaaggaaaggtcattagctgaaggctgaggc
tactgaaatgcctcgttatcatgaataagtgttccaggtgttgggtatgt
gactgactgcttgtgaccatctgtttgggatttgcttggttatatagccc
aaggcacaaatggaaacagggagggagttatctctagtcctgctagcctc
aggttctgaggcttctgaggcttgagtgtgcttcaactcactagtcctat
gccaactcctctagtggcatggtccacttacctcagctctgtagttaata
ctcaaaagaaaaaaaactttcaaaatattaatgataacaatttcaagttc
ttaaacaaaaacattaccaccattagtgtgtttttcctctactttttctc
ttagaggccttttcatgccattttattaaaatgtgatattatattttgct
aattattgattgttttcacattgttttagtcttgaaaatattctctttat
aaagttttgcagcacttattttgagctctgttgaaacccaagtaggacaa
gtaataatcagaatttctgtaggtactaaccagaagacccttcctatttt
tttcagttctgagagttttagaaatacaacccacccttccatcctttttc
tgactcattgtttgatactgtatctatatatgttaatcatatgcatactg
tgactacagtcctccaacccttctaataatacaacataactttccatgtt
gacttttaaaacaaaactatattctatgaaattctagattctgggtagtg
ataacataggatattaacacttgcttataaaacttatcagataaatctga
ttgaagccagatgagataacatgtccatattccagcaatggaagactgag
cagaagattgccatatgtgagctggtctggtctacaacagtgagatttct
tttctttttcttttcatttttttatttttgggttttcgagaacaggttct
ctctgtaataggcttgcctgtccttgaactcactttgtagaacaaggctg
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158484670_158485632
seq2: B6Ng01-187I04.b_48_998

seq1  GAATTCATATCTCAGTGATAATTTTGAAACAGAATGCAGTCTCCTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCTCAGTGATAATTTTGAAACAGAATGCAGTCTCCTAAATA  50

seq1  GCATTTAAGAGTCTATTTATTTATCACTTTGTTTTTGATGGCAGAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAGAGTCTATTTATTTATCACTTTGTTTTTGATGGCAGAGTAAC  100

seq1  ATTCTCAATATTCATGTTTTAAAGATAAATATGGTATTAAATAGAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAATATTCATGTTTTAAAGATAAATATGGTATTAAATAGAATGCT  150

seq1  TTGACCTATATTTTATGTAGATCCGCTTCTGGAAATTATAGAACAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTATATTTTATGTAGATCCGCTTCTGGAAATTATAGAACAATTTA  200

seq1  CAGTGCTTATTCATCCTTGGTGGCTGTAGATTGAGGATGTGCCTGTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTATTCATCCTTGGTGGCTGTAGATTGAGGATGTGCCTGTGAAC  250

seq1  TACACT-GGGTTATGGGGAGGCTTCCAGCCATCAGGCCATTTGGTGCTGT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGGGTTATGGGGAGGCTTCCAGCCATCAGGCCATTTGGTGCTGT  300

seq1  GATTATCTTTATTCTGCATGACCATATTTCATTTTAGTAACATCCCAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTTTATTCTGCATGACCATATTTCATTTTAGTAACATCCCAGAT  350

seq1  AGACAGTGCTTACAGAAACTGTTCCTCCCTTGCTTAT-AAATCTTTGGGC  398
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGACAGTGCTTACAGAAACTGTTCCTCCCTTGCTTATAAAATCTTTGGGC  400

seq1  TGGATTCACTGAAAAAGATTTTTTTTTATGATCAGTCAATATTTTGATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCACTGAAAAAGATTTTTTTTTATGATCAGTCAATATTTTGATTT  450

seq1  GCCAAAAAAAAAAAATGCTAACAGAGTTTAAGTTCCTGGAAGAAAGAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAAAAAAAATGCTAACAGAGTTTAAGTTCCTGGAAGAAAGAAAC  500

seq1  CACAGTAACTTTAAGAGGCTAGTATCTTGGATGAGTTCTAGGCCTTCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAACTTTAAGAGGCTAGTATCTTGGATGAGTTCTAGGCCTTCCAA  550

seq1  AGAGCTATTCCTTATCCACCTGATTTGGAATTAATATCTTGTGCCTAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATTCCTTATCCACCTGATTTGGAATTAATATCTTGTGCCTAACA  600

seq1  ATTAAAACCATTTTGAATTAACTTCCACCAACCCAAAAGATCTTGGGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACCATTTTGAATTAACTTCCACCAACCCAAAAGATCTTGGGTTT  650

seq1  ATAGAAAAGCTTCCCTAGCCGGGCAGTGGT-GGTGCATGCCTTTAATCCC  697
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGAAAAGCTTCCCTAGCCGGGCAGTGGTGGGTGCATGCCTTTAATCCC  700

seq1  AGTATTTGGGAGACAGAGGCAGGTGAATTTCTGAGTTTGAGGCCAG-CCT  746
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTATTTGGGAGACAGAGGCAGGTGAATTTCTGAGTTTGAGGCCAGCCCT  750

seq1  TGTCTACAGAATGAGTCCCAGGACAGCCAGGGCTA-TACAGAGAAACCCT  795
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTCTACAGAATGAGTCCCAGGACAGCCAGGGCTATTACAGAGAAACCCT  800

seq1  GTTTCAAAAAAAATCAAACTAACAAACAAACAAAAACAAAAACAAAAACA  845
      |||||  |||||||| |||  || | ||   ||       ||| |||  |
seq2  GTTTC--AAAAAATCCAACCTACTACCATCTAA----TCGAACCAAACTA  844

seq1  AAAACAAAATGTTTCCCTCATTTTCCTGTAACTGCCCTTTTGATATACCC  895
      ||    ||||| |||||||| |||||||| ||||||| ||  ||||| ||
seq2  AA---CAAATG-TTCCCTCA-TTTCCTGT-ACTGCCC-TTGAATATA-CC  886

seq1  CCCAATGTATGTTAAACTTGATTTTATTTATGACTTTCTTTGTTCTGTAA  945
      ||||||||||| ||||||  |||||||||||||||| ||||| |||||||
seq2  CCCAATGTATG-TAAACTGAATTTTATTTATGACTTCCTTTG-TCTGTAA  934

seq1  AACTTTATAAAAGTGATT  963
      |  ||||| ||| |||||
seq2  ACTTTTAT-AAATTGATT  951

seq1: chr3_158638147_158639262
seq2: B6Ng01-187I04.g_65_1166 (reverse)

seq1  GTCAGCC-TGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTA-TACAG  48
      ||||||| || |||||||||||||||| ||||||| |||| ||| |||||
seq2  GTCAGCCTTGTTCTACAAAGTGAGTTCAAGGACAGGCAAGCCTATTACAG  50

seq1  AGAAACCCTG-TCTCGAAAAAACCAAAAAAAAAAAAAAAAAAAAAAGAAA  97
      ||| | |||| |||||||||  |    ||||| |||||||  ||||||||
seq2  AGAGAACCTGTTCTCGAAAACCC----AAAAATAAAAAAATGAAAAGAAA  96

seq1  AAGAAAAAAGAAAAAGAAATCTCACTG-TGTAGACCAGACCAGCCTCAAC  146
      |||        |||||||||||||||| ||||||||||||||| ||||  
seq2  AAG--------AAAAGAAATCTCACTGTTGTAGACCAGACCAG-CTCA--  135

seq1  CATATGGCAATCCTTCTGCCTCAGTCTTCCCATTGCTGGAATATGGACAT  196
      ||||||||||| |||||| ||||||||| |||||||||||||||||||||
seq2  CATATGGCAAT-CTTCTG-CTCAGTCTT-CCATTGCTGGAATATGGACAT  182

seq1  GTTATCTCATCTGGCTTCAATCAGATTTATCTGATAAGTTTTATAAGCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCATCTGGCTTCAATCAGATTTATCTGATAAGTTTTATAAGCAA  232

seq1  GTGTTAATATCCTATGTTATCACTACCCAGAATCTAGAATTTCATAGAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATATCCTATGTTATCACTACCCAGAATCTAGAATTTCATAGAAT  282

seq1  ATAGTTTTGTTTTAAAAGTCAACATGGAAAGTTATGTTGTATTATTAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTGTTTTAAAAGTCAACATGGAAAGTTATGTTGTATTATTAGAA  332

seq1  GGGTTGGAGGACTGTAGTCACAGTATGCATATGATTAACATATATAGATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGAGGACTGTAGTCACAGTATGCATATGATTAACATATATAGATA  382

seq1  CAGTATCAAACAATGAGTCAGAAAAAGGATGGAAGGGTGGGTTGTATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCAAACAATGAGTCAGAAAAAGGATGGAAGGGTGGGTTGTATTTC  432

seq1  TAAAACTCTCAGAACTGAAAAAAATAGGAAGGGTCTTCTGGTTAGTACCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCTCAGAACTGAAAAAAATAGGAAGGGTCTTCTGGTTAGTACCT  482

seq1  ACAGAAATTCTGATTATTACTTGTCCTACTTGGGTTTCAACAGAGCTCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTCTGATTATTACTTGTCCTACTTGGGTTTCAACAGAGCTCAA  532

seq1  AATAAGTGCTGCAAAACTTTATAAAGAGAATATTTTCAAGACTAAAACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGCTGCAAAACTTTATAAAGAGAATATTTTCAAGACTAAAACAA  582

seq1  TGTGAAAACAATCAATAATTAGCAAAATATAATATCACATTTTAATAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAACAATCAATAATTAGCAAAATATAATATCACATTTTAATAAAA  632

seq1  TGGCATGAAAAGGCCTCTAAGAGAAAAAGTAGAGGAAAAACACACTAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAAAAGGCCTCTAAGAGAAAAAGTAGAGGAAAAACACACTAATG  682

seq1  GTGGTAATGTTTTTGTTTAAGAACTTGAAATTGTTATCATTAATATTTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATGTTTTTGTTTAAGAACTTGAAATTGTTATCATTAATATTTTG  732

seq1  AAAGTTTTTTTTCTTTTGAGTATTAACTACAGAGCTGAGGTAAGTGGACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTTTTCTTTTGAGTATTAACTACAGAGCTGAGGTAAGTGGACC  782

seq1  ATGCCACTAGAGGAGTTGGCATAGGACTAGTGAGTTGAAGCACACTCAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTAGAGGAGTTGGCATAGGACTAGTGAGTTGAAGCACACTCAAG  832

seq1  CCTCAGAAGCCTCAGAACCTGAGGCTAGCAGGACTAGAGATAACTCCCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGCCTCAGAACCTGAGGCTAGCAGGACTAGAGATAACTCCCTC  882

seq1  CCTGTTTCCATTTGTGCCTTGGGCTATATAACCAAGCAAATCCCAAACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCATTTGTGCCTTGGGCTATATAACCAAGCAAATCCCAAACAG  932

seq1  ATGGTCACAAGCAGTCAGTCACATACCCAACACCTGGAACACTTATTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACAAGCAGTCAGTCACATACCCAACACCTGGAACACTTATTCAT  982

seq1  GATAACGAGGCATTTCAGTAGCCTCAGCCTTCAGCTAATGACCTTTCCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACGAGGCATTTCAGTAGCCTCAGCCTTCAGCTAATGACCTTTCCTT  1032

seq1  CCTGGATAGTCTCACAGCTTTTCCCAAAATTATATAATTCTTGGTTTGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATAGTCTCACAGCTTTTCCCAAAATTATATAATTCTTGGTTTGCC  1082

seq1  TCAATAAAGCATATGAATTC  1116
      ||||||||||||||||||||
seq2  TCAATAAAGCATATGAATTC  1102