BAC Information

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BAC

Clone NameB6Ng01-187O04
Chromosome3 (Build37)
Map Location 35,252,412 - 35,362,188
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187O04.bB6Ng01-187O04.g
ACCGA012338GA012339
length1541,144
definitionB6Ng01-187O04.b B6Ng01-187O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,252,412 - 35,252,565)(35,361,039 - 35,362,188)
sequence
gaattcagtttaacctcgctcacagaggaggacttacagccatcttcaca
ggagaaggtcgatggcaggaaccaataataacagtgtttgacccaccaaa
cccaatcttgggatgcagggccaggcttggaccctgcctggggtgggggt
ggag
gaattcatctatgcagctcaggtgcatgttggtggaactaaagactgtat
taaattccaccacagccaattttctttcctaggcccattagaacattaca
gagcacatccaacataaacacaacagattgagcaggcatctctcacttgc
cagtattagtgggaggaaatagagcctgtgcaaatgaaatcagtagataa
tccctaaggctcaccagggtctttggtttaatctccttccctagcaacgt
tgtcaggtgccagactcagaggaagagaatcctgacctttgaagagaacg
tggacattatttgtgtttgctgcacacaaagacccaggagcaactttgaa
attccattttaaagtttatccaccgacgaaagtaatgttcaggtcaaaat
tcagggcaggctgctgctgccttgtagactttcagtctgggacccaggca
gtgtgcagacctgtgattattctgtgtacaggaacgactaataccaaagc
aggaatgatggtttgatgatggccacctttgtgaactgtagctccacaat
gcacctcgggtggtgcttaggttattgtgtggccttttctggagagatat
gaatgaaccatagataaggcactgatgccaaaccaaagatcccactcata
cctaccttggtaagccagagaatctggggagggagaaggtcacttatatg
agcacgaaagagggattccatgtaggaatgtgggatgctcataggtagcc
atattactgggaagtccatcccagcatgggtgtgggtttgtcagtttcaa
ggatccgtgagagttataaattgcctttacttccttagacttgtatagta
agtgtttcttttgcctgagttttggactctctttcttccctccaggaagg
aatggctcactttgtagaggataggaaactcagacactgaaaagatagga
acttaaacagtctcctattgcatttccttctgtgccagctccaattgcag
gcttttctttcgttcagaggtactcccagtgctgctgggtcagggtcttc
aaccctcctttatgctacaacccctttacacaggtttctcgatgttgtaa
gtgaccccaaccgtagaatatttgttgttacttcgactgtaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35252412_35252565
seq2: B6Ng01-187O04.b_39_192

seq1  GAATTCAGTTTAACCTCGCTCACAGAGGAGGACTTACAGCCATCTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTAACCTCGCTCACAGAGGAGGACTTACAGCCATCTTCACA  50

seq1  GGAGAAGGTCGATGGCAGGAACCAATAATAACAGTGTTTGACCCACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTCGATGGCAGGAACCAATAATAACAGTGTTTGACCCACCAAA  100

seq1  CCCAATCTTGGGATGCAGGGCCAGGCTTGGACCCTGCCTGGGGTGGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTTGGGATGCAGGGCCAGGCTTGGACCCTGCCTGGGGTGGGGGT  150

seq1  GGAG  154
      ||||
seq2  GGAG  154

seq1: chr3_35361039_35362188
seq2: B6Ng01-187O04.g_64_1207 (reverse)

seq1  AATTACAGTTATGAAGTAACAACAAAATAATTTTACGGTTGGGGGGTCAC  50
      |||||||||   ||||||||||||||   ||| |||||||  ||||||||
seq2  AATTACAGT--CGAAGTAACAACAAA--TATTCTACGGTT--GGGGTCAC  44

seq1  -TACAACAT-GAGAAA-CTGTGTTAAAGGGTTGTAGCAT-TAGGAAGGTT  96
       |||||||| |||||| |||||| || ||||||||||||  |||| ||||
seq2  TTACAACATCGAGAAACCTGTGTAAAGGGGTTGTAGCATAAAGGAGGGTT  94

seq1  GAAGGACCCTGA-CCAGCAGCACTGGGAGTA-CTCTGAAACGGAAAGGAA  144
      ||| |||||||| |||||||||||||||||| ||||| ||||  || |||
seq2  GAA-GACCCTGACCCAGCAGCACTGGGAGTACCTCTG-AACG--AAAGAA  140

seq1  AAGCCTGCAATTGGAGCTGGCACAG-AGGAAATGCAATAGGAGACTGTTT  193
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  AAGCCTGCAATTGGAGCTGGCACAGAAGGAAATGCAATAGGAGACTG-TT  189

seq1  TAAGTTCCTATCTTTTTCAGTTGTCTGAGTTTCCTATCCTCTACAAAGTG  243
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TAAGTTCCTATC-TTTTCAG-TGTCTGAGTTTCCTATCCTCTACAAAGTG  237

seq1  AGCCATTCCCTTCTGGAGGGAAGAAAGAGAGTCCAAAACTCAGGCAAAAG  293
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCCTTCCTGGAGGGAAGAAAGAGAGTCCAAAACTCAGGCAAAAG  287

seq1  AAACACTTACTATACAAGTCTAAGGAAGTAAAGGCAATTTATAACTCTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTACTATACAAGTCTAAGGAAGTAAAGGCAATTTATAACTCTCA  337

seq1  CGGATCCTTGAAACTGACAAACCCACACCCATGCTGGGATGGACTTCCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCTTGAAACTGACAAACCCACACCCATGCTGGGATGGACTTCCCA  387

seq1  GTAATATGGCTACCTATGAGCATCCCACATTCCTACATGGAATCCCTCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGGCTACCTATGAGCATCCCACATTCCTACATGGAATCCCTCTT  437

seq1  TCGTGCTCATATAAGTGACCTTCTCCCTCCCCAGATTCTCTGGCTTACCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTCATATAAGTGACCTTCTCCCTCCCCAGATTCTCTGGCTTACCA  487

seq1  AGGTAGGTATGAGTGGGATCTTTGGTTTGGCATCAGTGCCTTATCTATGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTATGAGTGGGATCTTTGGTTTGGCATCAGTGCCTTATCTATGG  537

seq1  TTCATTCATATCTCTCCAGAAAAGGCCACACAATAACCTAAGCACCACCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATATCTCTCCAGAAAAGGCCACACAATAACCTAAGCACCACCC  587

seq1  GAGGTGCATTGTGGAGCTACAGTTCACAAAGGTGGCCATCATCAAACCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCATTGTGGAGCTACAGTTCACAAAGGTGGCCATCATCAAACCAT  637

seq1  CATTCCTGCTTTGGTATTAGTCGTTCCTGTACACAGAATAATCACAGGTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGCTTTGGTATTAGTCGTTCCTGTACACAGAATAATCACAGGTC  687

seq1  TGCACACTGCCTGGGTCCCAGACTGAAAGTCTACAAGGCAGCAGCAGCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTGCCTGGGTCCCAGACTGAAAGTCTACAAGGCAGCAGCAGCCT  737

seq1  GCCCTGAATTTTGACCTGAACATTACTTTCGTCGGTGGATAAACTTTAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAATTTTGACCTGAACATTACTTTCGTCGGTGGATAAACTTTAAA  787

seq1  ATGGAATTTCAAAGTTGCTCCTGGGTCTTTGTGTGCAGCAAACACAAATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTTCAAAGTTGCTCCTGGGTCTTTGTGTGCAGCAAACACAAATA  837

seq1  ATGTCCACGTTCTCTTCAAAGGTCAGGATTCTCTTCCTCTGAGTCTGGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCACGTTCTCTTCAAAGGTCAGGATTCTCTTCCTCTGAGTCTGGCA  887

seq1  CCTGACAACGTTGCTAGGGAAGGAGATTAAACCAAAGACCCTGGTGAGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAACGTTGCTAGGGAAGGAGATTAAACCAAAGACCCTGGTGAGCC  937

seq1  TTAGGGATTATCTACTGATTTCATTTGCACAGGCTCTATTTCCTCCCACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATTATCTACTGATTTCATTTGCACAGGCTCTATTTCCTCCCACT  987

seq1  AATACTGGCAAGTGAGAGATGCCTGCTCAATCTGTTGTGTTTATGTTGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGCAAGTGAGAGATGCCTGCTCAATCTGTTGTGTTTATGTTGGA  1037

seq1  TGTGCTCTGTAATGTTCTAATGGGCCTAGGAAAGAAAATTGGCTGTGGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGTAATGTTCTAATGGGCCTAGGAAAGAAAATTGGCTGTGGTG  1087

seq1  GAATTTAATACAGTCTTTAGTTCCACCAACATGCACCTGAGCTGCATAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAATACAGTCTTTAGTTCCACCAACATGCACCTGAGCTGCATAGA  1137

seq1  TGAATTC  1150
      |||||||
seq2  TGAATTC  1144