BAC Information

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BAC

Clone NameB6Ng01-188F05
Chromosome3 (Build37)
Map Location 141,357,834 - 141,513,005
singlet/doubletdoublet
Overlap geneUnc5c, Bmpr1b
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188F05.bB6Ng01-188F05.g
ACCGA012652GA012653
length1,1591,191
definitionB6Ng01-188F05.b B6Ng01-188F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,511,835 - 141,513,005)(141,357,834 - 141,359,017)
sequence
gaattcatacttactctacatcgtcctgggctgggctagaaaaatcactt
gatctcagacagttaggaagccctttgccacccatccctctgaatctctg
attctttttttctttctgctagctagtgacaggtcagagatacaagcttg
gtatgcagtttgaagttcaaatacatggaggcattatatatcccatcaga
agtattaaaacagtaagtgagaaattgtaaaatggctggcagaaacgaag
ctcttcctaaaagaaatttgtgtttctatttttattttttaaattatctt
taatctttttttacagtccagtcattatcccagtctaccctctggcagtt
cctcatcccatttctccttcactgtctccatgaggatgcaccccatccca
ccctaccctaccctgcaaggcctcccctttccctggggcctcaagtctct
ccagggttaggtgcattttctctcactgaggccagaccagtgagagaggc
ggtcctctgcagtgtgtgtgtctggggcctcagaccagctagtgtctgct
gcctggttggtggctcagtgctaagagattcttgggggtcttagaaacac
agatttcttgggatccatctcaaggggaagctctgagaaatttgcatctc
taaacctatcagaatattgaaacaatggactccaaagaaatggggatttc
tctgggaatctcatgctgggtagagagaatggccatggccagaggagaat
ttggcctgcacaaagtgaagccaaagattttaactctttgtcagcaagta
gcccagacccaggatgagtcagtagttggtgagaaccacaccttgaagag
ttactagcaagcatagccttgactctgtatttaaattaaatctccctgtg
ggtccctgtgttgggcctctggggttttctggatctctgggcctttccaa
ggtgtccacctagcatatagctccttttcctattaacagatgagccttta
ccctctgcatcttgtctgccccagctgtcaggttctcagagcctgttcct
ctctgtataccctcttactttctcaccacactatagaagcttcccccatc
ttgcttgtctgttactccctctggacatactggccaatgcattaacttgc
ctgtattta
gaattcaaattgcatcgccctttggaagaaagctagactaaataaggcaa
aggacgtctcccaaagtcacacgtttagttaatagaagaaagaagattta
gccatatctcttccaagctgtgtactctgtaacagttcatacacagtaat
taaaaataagctttacccacaagtctgcatcagtattatcttctctatgt
atctagtcttaaaacttgttgaccataatctaaatatggaagataaaaat
atatgcaatgggatcagcagaacaacaaaaagatgtttacattattaata
aagaaaatatgaagaagcacattatatttagtggtggtgttttcagtaaa
ccagctttccctctcgaatgattaaaaatgctttcagaatatagggatat
ttgggaactatcagaacgcatagtgatctctcatttcctgcataaataaa
taaataaatactgttgttgtaaagctcctgttcaggatgatattgtcctt
cttggatttaatgagttataattgtgttattatagttctttaaaaaaggg
gagatgaaaagaatattttcactacattaaatctgactttctcagcagtt
acagaacaggatggaggctataaagagtgtgctcactatatgttccctga
attttagagtaaatacctgccatagacaaagtttaaattataggatttat
ttttcatttttctggctaggttgaagttatgtaactactatgatgactaa
ctattcctcctcacctctaaaatataatggcatatctcttatatagatat
atataacaatatcctcacctctaaaatatattggcatatctcttatatag
atatataacaatatcctcacctctaaaatataatgggcatatctcttata
tagatatataacaatatcctcggggaacattttctcattaatcaatcttt
tttacaagcctttactatgttctgggcattatctgagacctgatatagca
tgtaactgagactgtaaccagcgtgctgcagcaaggaagtgaaactctag
aagacttgacctctcctccacttataatctcttttaatacaagtttggtg
ttatttctgcccacctcagaaatccaatcccgtggttctgaagtctgcct
tccatgtattatggataggacgttaaggaatcacaggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141511835_141513005
seq2: B6Ng01-188F05.b_46_1204 (reverse)

seq1  TAAATACAGGCAAGTTTAAAATCCATTGGCAAGTATGTCCAAGAGGGAGT  50
      ||||||||||||||||   ||| ||||||| ||||||||| |||||||||
seq2  TAAATACAGGCAAGTT---AATGCATTGGCCAGTATGTCC-AGAGGGAGT  46

seq1  TACAGAC-AGCAAGATGGGGGGAGCTTTCCTATAGGTGT-GTGAGAAAGG  98
       |||||| ||||||||||||| |||||  ||||| |||| ||||||||| 
seq2  AACAGACAAGCAAGATGGGGGAAGCTT--CTATA-GTGTGGTGAGAAAG-  92

seq1  TAAAGAGGGTATACCAGAGAGGAAACAGGCTCCTGAGAACCCTGACAGGC  148
        ||||||||||| |||||||| |||||||| ||||||| ||||||| ||
seq2  -TAAGAGGGTATA-CAGAGAGG-AACAGGCT-CTGAGAA-CCTGACA-GC  136

seq1  TGGGGCAGACAAGAATGCAGAGGGTAAAGGCTCATCTTGTTAATAGGAAA  198
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TGGGGCAGACAAG-ATGCAGAGGGTAAAGGCTCATC-TGTTAATAGGAAA  184

seq1  AGGAGCTATATGCTAGGTGGACACCTTGGAAAGG-CCAGAGATCCAGAAA  247
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGAGCTATATGCTAGGTGGACACCTTGGAAAGGCCCAGAGATCCAGAAA  234

seq1  ACCCCAGAGG-CCAACACAGGGACCCACAGGGAGATTTAATTTAAATACA  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGGCCCAACACAGGGACCCACAGGGAGATTTAATTTAAATACA  284

seq1  GAGTCAAGGCTATGCTTGCTAGTAACTCTTCAAGGTGTGGTTCTCACCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGGCTATGCTTGCTAGTAACTCTTCAAGGTGTGGTTCTCACCAA  334

seq1  CTACTGACTCATCCTGGGTCTGGGCTACTTGCTGACAAAGAGTTAAAATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACTCATCCTGGGTCTGGGCTACTTGCTGACAAAGAGTTAAAATC  384

seq1  TTTGGCTTCACTTTGTGCAGGCCAAATTCTCCTCTGGCCATGGCCATTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCACTTTGTGCAGGCCAAATTCTCCTCTGGCCATGGCCATTCT  434

seq1  CTCTACCCAGCATGAGATTCCCAGAGAAATCCCCATTTCTTTGGAGTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCAGCATGAGATTCCCAGAGAAATCCCCATTTCTTTGGAGTCCA  484

seq1  TTGTTTCAATATTCTGATAGGTTTAGAGATGCAAATTTCTCAGAGCTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAATATTCTGATAGGTTTAGAGATGCAAATTTCTCAGAGCTTCC  534

seq1  CCTTGAGATGGATCCCAAGAAATCTGTGTTTCTAAGACCCCCAAGAATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGATGGATCCCAAGAAATCTGTGTTTCTAAGACCCCCAAGAATCT  584

seq1  CTTAGCACTGAGCCACCAACCAGGCAGCAGACACTAGCTGGTCTGAGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTGAGCCACCAACCAGGCAGCAGACACTAGCTGGTCTGAGGCC  634

seq1  CCAGACACACACACTGCAGAGGACCGCCTCTCTCACTGGTCTGGCCTCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACACACACTGCAGAGGACCGCCTCTCTCACTGGTCTGGCCTCAG  684

seq1  TGAGAGAAAATGCACCTAACCCTGGAGAGACTTGAGGCCCCAGGGAAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAAATGCACCTAACCCTGGAGAGACTTGAGGCCCCAGGGAAAGG  734

seq1  GGAGGCCTTGCAGGGTAGGGTAGGGTGGGATGGGGTGCATCCTCATGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTTGCAGGGTAGGGTAGGGTGGGATGGGGTGCATCCTCATGGAG  784

seq1  ACAGTGAAGGAGAAATGGGATGAGGAACTGCCAGAGGGTAGACTGGGATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAGGAGAAATGGGATGAGGAACTGCCAGAGGGTAGACTGGGATA  834

seq1  ATGACTGGACTGTAAAAAAAGATTAAAGATAATTTAAAAAATAAAAATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGACTGTAAAAAAAGATTAAAGATAATTTAAAAAATAAAAATAG  884

seq1  AAACACAAATTTCTTTTAGGAAGAGCTTCGTTTCTGCCAGCCATTTTACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAATTTCTTTTAGGAAGAGCTTCGTTTCTGCCAGCCATTTTACA  934

seq1  ATTTCTCACTTACTGTTTTAATACTTCTGATGGGATATATAATGCCTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCACTTACTGTTTTAATACTTCTGATGGGATATATAATGCCTCCA  984

seq1  TGTATTTGAACTTCAAACTGCATACCAAGCTTGTATCTCTGACCTGTCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGAACTTCAAACTGCATACCAAGCTTGTATCTCTGACCTGTCAC  1034

seq1  TAGCTAGCAGAAAGAAAAAAAGAATCAGAGATTCAGAGGGATGGGTGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCAGAAAGAAAAAAAGAATCAGAGATTCAGAGGGATGGGTGGCA  1084

seq1  AAGGGCTTCCTAACTGTCTGAGATCAAGTGATTTTTCTAGCCCAGCCCAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTCCTAACTGTCTGAGATCAAGTGATTTTTCTAGCCCAGCCCAG  1134

seq1  GACGATGTAGAGTAAGTATGAATTC  1171
      |||||||||||||||||||||||||
seq2  GACGATGTAGAGTAAGTATGAATTC  1159

seq1: chr3_141357834_141359017
seq2: B6Ng01-188F05.g_65_1255

seq1  GAATTCAAATTGCATCGCCCTTTGGAAGAAAGCTAGACTAAATAAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGCATCGCCCTTTGGAAGAAAGCTAGACTAAATAAGGCAA  50

seq1  AGGACGTCTCCCAAAGTCACACGTTTAGTTAATAGAAGAAAGAAGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTCTCCCAAAGTCACACGTTTAGTTAATAGAAGAAAGAAGATTTA  100

seq1  GCCATATCTCTTCCAAGCTGTGTACTCTGTAACAGTTCATACACAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATCTCTTCCAAGCTGTGTACTCTGTAACAGTTCATACACAGTAAT  150

seq1  TAAAAATAAGCTTTACCCACAAGTCTGCATCAGTATTATCTTCTCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGCTTTACCCACAAGTCTGCATCAGTATTATCTTCTCTATGT  200

seq1  ATCTAGTCTTAAAACTTGTTGACCATAATCTAAATATGGAAGATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCTTAAAACTTGTTGACCATAATCTAAATATGGAAGATAAAAAT  250

seq1  ATATGCAATGGGATCAGCAGAACAACAAAAAGATGTTTACATTATTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATGGGATCAGCAGAACAACAAAAAGATGTTTACATTATTAATA  300

seq1  AAGAAAATATGAAGAAGCACATTATATTTAGTGGTGGTGTTTTCAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATGAAGAAGCACATTATATTTAGTGGTGGTGTTTTCAGTAAA  350

seq1  CCAGCTTTCCCTCTCGAATGATTAAAAATGCTTTCAGAATATAGGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCCCTCTCGAATGATTAAAAATGCTTTCAGAATATAGGGATAT  400

seq1  TTGGGAACTATCAGAACGCATAGTGATCTCTCATTTCCTGCATAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACTATCAGAACGCATAGTGATCTCTCATTTCCTGCATAAATAAA  450

seq1  TAAATAAATACTGTTGTTGTAAAGCTCCTGTTCAGGATGATATTGTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATACTGTTGTTGTAAAGCTCCTGTTCAGGATGATATTGTCCTT  500

seq1  CTTGGATTTAATGAGTTATAATTGTGTTATTATAGTTCTTTAAAAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTTAATGAGTTATAATTGTGTTATTATAGTTCTTTAAAAAAGGG  550

seq1  GAGATGAAAAGAATATTTTCACTACATTAAATCTGACTTTCTCAGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAAAGAATATTTTCACTACATTAAATCTGACTTTCTCAGCAGTT  600

seq1  ACAGAACAGGATGGAGGCTATAAAGAGTGTGCTCACTATATGTTCCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGGATGGAGGCTATAAAGAGTGTGCTCACTATATGTTCCCTGA  650

seq1  ATTTTAGAGTAAATACCTGCCATAGACAAAGTTTAAATTATAGGATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGTAAATACCTGCCATAGACAAAGTTTAAATTATAGGATTTAT  700

seq1  TTTTCATTTTTCTGGCTAGGTTGAAGTTATGTAACTACTATGATGACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTTCTGGCTAGGTTGAAGTTATGTAACTACTATGATGACTAA  750

seq1  CTATTCCTCCTCACCTCTAAAATATAATGGCATATCTCTTATATAGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTCCTCACCTCTAAAATATAATGGCATATCTCTTATATAGATAT  800

seq1  ATATAACAATATCCTCACCTCTAAAATATATTGGCATATCTCTTATATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAATATCCTCACCTCTAAAATATATTGGCATATCTCTTATATAG  850

seq1  ATATATAACAATATCCTCACCTCTAAAATATAAT-GGCATATCTCTTATA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATATAACAATATCCTCACCTCTAAAATATAATGGGCATATCTCTTATA  900

seq1  TAGATATATAACAATATCCTCGGGGAACATTTTCTCATTAATCAATCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATAACAATATCCTCGGGGAACATTTTCTCATTAATCAATCTTT  950

seq1  TTTACAAGCCTTTACTATGTTCTGGGCATTATCTGAGACCTGATATAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGCCTTTACTATGTTCTGGGCATTATCTGAGACCTGATATAGCA  1000

seq1  TGTAACTGAGACTGTTACCAGCGTGCTGCAGCAGGAAAGTGGAAACTCTA  1049
      ||||||||||||||| ||||||||||||||||| | |||| |||||||||
seq2  TGTAACTGAGACTGTAACCAGCGTGCTGCAGCAAGGAAGT-GAAACTCTA  1049

seq1  GAAGACTTGA-CTCTCCT-CACTTATAATCTCTTTTAAATAC-AGTTT-G  1095
      |||||||||| ||||||| ||||||||||||||||| ||||| ||||| |
seq2  GAAGACTTGACCTCTCCTCCACTTATAATCTCTTTT-AATACAAGTTTGG  1098

seq1  TGT--ATTCTGCCCA-CTCAGAAATTCCAATCCGGTG--TCTGAATGTCC  1140
      |||   ||||||||| |||||||| |||||||| |||  |||||| || |
seq2  TGTTATTTCTGCCCACCTCAGAAA-TCCAATCCCGTGGTTCTGAA-GT-C  1145

seq1  TGCCTTCCATGTATTATTGGATAAGGACG-TAAGGAATCA---GGGAT  1184
      |||||||||||||||| ||||| |||||| ||||||||||   |||||
seq2  TGCCTTCCATGTATTA-TGGAT-AGGACGTTAAGGAATCACAGGGGAT  1191