BAC Information

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BAC

Clone NameB6Ng01-188G13
Chromosome3 (Build37)
Map Location 113,694,343 - 113,840,717
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188G13.bB6Ng01-188G13.g
ACCGA012716GA012717
length1,0481,163
definitionB6Ng01-188G13.b B6Ng01-188G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,694,343 - 113,695,393)(113,839,548 - 113,840,717)
sequence
gaattctcttctctcctcttttccctatcatttttctattgtcctttcca
ttcctctgacctcatcttttcttgtgtttgtctgcttgtttgcttgttca
tttaatgtgagaccagacttcactatgtaaccaaggctgcttagggctac
ctcattatgtagcttaggctagcctcaaactcacaatgttccttccccct
tatcctcttgtgggctaaggagtgtttgcttcatcctgagggtgccctgt
gcttgatcagagataatactgtctagaacataatattttgtcttgatttc
aacccgacgtatcatacctctttgtcatagacgctggtcaaatatatgaa
gcaaatgtgcagaaagaaaaggaaattggtttgtcacagcactaatacct
gaaaattatcattttctcgtgctagtccccaagtctgaatttctacagag
aaactttgtgattttgaaaaccataaatagaggagacttttatgttgaca
ttgacttaatcatctgattattttgcatatacaaacattttttgaagagt
tttctagtcatggcttttctttcacagatccttcccactctcttaccagc
tctctctctctctctctctctctctctctctctctctctctctctcactc
gcgcgtgcgtgcgtgcgtgtgctttctcttgctctctcacactctcactc
tctctcctgctcttgctctcactctctttttcagcaaacaaatggggaaa
caaaacaaactcaagagacaaaagaaaacacacggaaccccaaaaaatta
aatctaaatacacaaataggaaaccatactattaagcaaagactagtcaa
acaacaactgtcctaacaaggaatatgagataaaaaaaaatctcgaaaaa
cacaattggctggggtttatctttaccaatagtggctgagcacaggccct
ggtattaaagtgtggtaaatataccctagtgagactccattggaactaac
aagttttttccttctgcaaaaaactgctcatgggtgataattccttgg

gaattccaaagaccttaattcatatcttctgcttcccaacagcacccaag
taaagcaaggttaggccttgtactctgagactgttttgctgttgcaaggc
aacaacgatctattaatacatcttaatactttgaagtttgtgggagataa
gaaaaaaaaagttcagcattcatcaacaaggaaatgtgggttataaagtg
ataatattatataataaacaatgatggcttagaaatgtaacaagcccata
agtgcacttaatataaataaaatatgactatattttactagtgaaacaga
acttaatcccaataataaaatccctccatttcatattgggcatatgtcca
aacatttctcagagatttttttcatcattatccaagcaggtttatgtctt
tattaaataagtaaatagagaagatagaattttaaacctttttccaaaat
tttgtaaatattactctaaaaatggtgtatatgtgaggtgagagtttcca
caaatctatgtttcttatttaaaccattgtatggaggaaattcaatatgg
gtaagatgcctgagagaatagcagacttttagaatttatacacatctcct
tgtattaagggagtacagaaatattctttgattttttttttttattttgt
gttgttaaattaacttctttacattggacttctccccaaaataatgtctc
caaagtgataaatagctgaaataaattgaaatatactgtaatgcctttaa
aatttggaagtagaattccagactttctgatactgaaaaactctcagata
gggactgagaaatcatgtcactggcctctacagatgacccacacttaatg
atggagaaaaatttcgaagctggatgtttgaatggacaaaagaacattca
cctatatacccctaaaaaatgtggtgaactctgctgccacttgaatgtag
caaatgtttttttatttagcaaacaagctagttagaacatgttcaatttc
aatactggacatatatgatgtaagagtatagagtattttctgtatgacat
gatttcaataatattttgtgttcactatcttatgagtcacttgagaacaa
ataccttttaatggagagttaaatttgcatattacatgaatggatttgca
gcttcactttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113694343_113695393
seq2: B6Ng01-188G13.b_46_1093

seq1  GAATTCTCTTCTCTCCTCTTTTCCCTATCATTTTTCTATTGTCCTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCTCCTCTTTTCCCTATCATTTTTCTATTGTCCTTTCCA  50

seq1  TTCCTCTGACCTCATCTTTTCTTGTGTTTGTCTGCTTGTTTGCTTGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGACCTCATCTTTTCTTGTGTTTGTCTGCTTGTTTGCTTGTTCA  100

seq1  TTTAATGTGAGACCAGACTTCACTATGTAACCAAGGCTGCTTAGGGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGAGACCAGACTTCACTATGTAACCAAGGCTGCTTAGGGCTAC  150

seq1  CTCATTATGTAGCTTAGGCTAGCCTCAAACTCACAATGTTCCTTCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATGTAGCTTAGGCTAGCCTCAAACTCACAATGTTCCTTCCCCCT  200

seq1  TATCCTCTTGTGGGCTAAGGAGTGTTTGCTTCATCCTGAGGGTGCCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTTGTGGGCTAAGGAGTGTTTGCTTCATCCTGAGGGTGCCCTGT  250

seq1  GCTTGATCAGAGATAATACTGTCTAGAACATAATATTTTGTCTTGATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCAGAGATAATACTGTCTAGAACATAATATTTTGTCTTGATTTC  300

seq1  AACCCGACGTATCATACCTCTTTGTCATAGACGCTGGTCAAATATATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGACGTATCATACCTCTTTGTCATAGACGCTGGTCAAATATATGAA  350

seq1  GCAAATGTGCAGAAAGAAAAGGAAATTGGTTTGTCACAGCACTAATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTGCAGAAAGAAAAGGAAATTGGTTTGTCACAGCACTAATACCT  400

seq1  GAAAATTATCATTTTCTCGTGCTAGTCCCCAAGTCTGAATTTCTACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTATCATTTTCTCGTGCTAGTCCCCAAGTCTGAATTTCTACAGAG  450

seq1  AAACTTTGTGATTTTGAAAACCATAAATAGAGGAGACTTTTATGTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGTGATTTTGAAAACCATAAATAGAGGAGACTTTTATGTTGACA  500

seq1  TTGACTTAATCATCTGATTATTTTGCATATACAAACATTTTTTGAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAATCATCTGATTATTTTGCATATACAAACATTTTTTGAAGAGT  550

seq1  TTTCTAGTCATGGCTTTTCTTTCACAGATCCTTCCCACTCTCTTACCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTCATGGCTTTTCTTTCACAGATCCTTCCCACTCTCTTACCAGC  600

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCC  650
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC  650

seq1  GCGCGTGCGTGCGTGCGTGTGCTTTCTCTTGCTCTCTCACACTCTCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGTGCGTGCGTGCGTGTGCTTTCTCTTGCTCTCTCACACTCTCACTC  700

seq1  TCACTCTTGCTCTTGCTCTCACTCTCTTTTTCAGCAAACAAATGGGGAAA  750
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGCTCTTGCTCTCACTCTCTTTTTCAGCAAACAAATGGGGAAA  750

seq1  CAAACAAAACTCAGGAGATAAAAGAAAAACACACAGGAACCACAAAAATT  800
      ||||  ||||||| |||| ||||| ||||||||| |||||| |||||| |
seq2  CAAAACAAACTCAAGAGACAAAAG-AAAACACAC-GGAACCCCAAAAAAT  798

seq1  AAAACATAAAAACACAAAATAAGAAACCATACTATTTAAGCAAAAGACTA  850
       |||  |||| |||| ||||| |||||||||||| |||||| ||||||||
seq2  TAAATCTAAATACAC-AAATAGGAAACCATACTA-TTAAGC-AAAGACTA  845

seq1  GTCAAACAAACAAACTGTCCTAACAAAGCAATATGAGAT-AAAAAAAATC  899
      |||||||||   |||||||||||| ||| |||||||||| ||||||||||
seq2  GTCAAACAA--CAACTGTCCTAAC-AAGGAATATGAGATAAAAAAAAATC  892

seq1  TCGAAAAACATCATTGGCT-GGGTTTATCTTTACCAAATAGT-GCTGAGC  947
      ||||||||||  ||||||| ||||||||||||||| |||||| |||||||
seq2  TCGAAAAACACAATTGGCTGGGGTTTATCTTTACC-AATAGTGGCTGAGC  941

seq1  ACAGGCCCTGGTATT-AAGTGTGGTTAATATACCC-AGTGAGACTCCATT  995
      ||||||||||||||| ||||||||| ||||||||| ||||||||||||||
seq2  ACAGGCCCTGGTATTAAAGTGTGGTAAATATACCCTAGTGAGACTCCATT  991

seq1  GGAACAAACAAGTTTTTTCCTT-TGCAAAAAGCTGCTCAATGGTGATAAT  1044
      ||||| |||||||||||||||| |||||||| |||||||  |||||||||
seq2  GGAACTAACAAGTTTTTTCCTTCTGCAAAAAACTGCTCATGGGTGATAAT  1041

seq1  TTCTTGG  1051
      | |||||
seq2  TCCTTGG  1048


seq1: chr3_113839548_113840717
seq2: B6Ng01-188G13.g_64_1226 (reverse)

seq1  AAAAAAGTGAAGGCTTCAAATCCTTTTAAATTGTAATATGC-AATTTTAC  49
      ||||||||||| ||| ||||||| || |   |||||||||| ||||| ||
seq2  AAAAAAGTGAA-GCTGCAAATCCATTCA---TGTAATATGCAAATTTAAC  46

seq1  TCTCCATTTAAAAAGTATTTGTTCTCAAGTGACTCATAAGATAGTGAACA  99
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTCCA-TTAAAAGGTATTTGTTCTCAAGTGACTCATAAGATAGTGAACA  95

seq1  CAAAATA-TATTGAAAATCATGTCATACAAGAAATACTCTATACTCTTTA  148
      ||||||| ||||| |||||||||||||||  ||||||||||||||| |||
seq2  CAAAATATTATTG-AAATCATGTCATACAGAAAATACTCTATACTC-TTA  143

seq1  CATCATTATATGTCCCAGTATTGAAATTGAACATGTTCTTAACTAGCTTG  198
      ||||| ||||||| |||||||||||||||||||||||| |||||||||||
seq2  CATCA-TATATGT-CCAGTATTGAAATTGAACATGTTC-TAACTAGCTTG  190

seq1  TTTGCTAAAT-AAAAAACATTTGCTACATTCAAGTGGCAGCAGAGTTCAC  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAATAAAAAAACATTTGCTACATTCAAGTGGCAGCAGAGTTCAC  240

seq1  CACATTTTTTTAGGGGTATATAGGTGAATGTTCTTTTGTCCATTCAAACA  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACA-TTTTTTAGGGGTATATAGGTGAATGTTCTTTTGTCCATTCAAACA  289

seq1  TCCAGCTTCG-AATTTTTCTCCATCATTAAGTGTGGGTCATCTGTAGAGG  346
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCGAAATTTTTCTCCATCATTAAGTGTGGGTCATCTGTAGAGG  339

seq1  CCAGTGACATGATTTCTCAGTCCCTATCTGAGAGTTTTTCAGTATCAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACATGATTTCTCAGTCCCTATCTGAGAGTTTTTCAGTATCAGAA  389

seq1  AGTCTGGAATTCTACTTCCAAATTTTAAAGGCATTACAGTATATTTCAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGAATTCTACTTCCAAATTTTAAAGGCATTACAGTATATTTCAAT  439

seq1  TTATTTCAGCTATTTATCACTTTGGAGACATTATTTTGGGGAGAAGTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGCTATTTATCACTTTGGAGACATTATTTTGGGGAGAAGTCCA  489

seq1  ATGTAAAGAAGTTAATTTAACAACACAAAATAAAAAAAAAAAATCAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGAAGTTAATTTAACAACACAAAATAAAAAAAAAAAATCAAAGA  539

seq1  ATATTTCTGTACTCCCTTAATACAAGGAGATGTGTATAAATTCTAAAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGTACTCCCTTAATACAAGGAGATGTGTATAAATTCTAAAAGT  589

seq1  CTGCTATTCTCTCAGGCATCTTACCCATATTGAATTTCCTCCATACAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTCTCTCAGGCATCTTACCCATATTGAATTTCCTCCATACAATG  639

seq1  GTTTAAATAAGAAACATAGATTTGTGGAAACTCTCACCTCACATATACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATAAGAAACATAGATTTGTGGAAACTCTCACCTCACATATACAC  689

seq1  CATTTTTAGAGTAATATTTACAAAATTTTGGAAAAAGGTTTAAAATTCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGAGTAATATTTACAAAATTTTGGAAAAAGGTTTAAAATTCTA  739

seq1  TCTTCTCTATTTACTTATTTAATAAAGACATAAACCTGCTTGGATAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTATTTACTTATTTAATAAAGACATAAACCTGCTTGGATAATGA  789

seq1  TGAAAAAAATCTCTGAGAAATGTTTGGACATATGCCCAATATGAAATGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAATCTCTGAGAAATGTTTGGACATATGCCCAATATGAAATGGA  839

seq1  GGGATTTTATTATTGGGATTAAGTTCTGTTTCACTAGTAAAATATAGTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTATTATTGGGATTAAGTTCTGTTTCACTAGTAAAATATAGTCA  889

seq1  TATTTTATTTATATTAAGTGCACTTATGGGCTTGTTACATTTCTAAGCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTATATTAAGTGCACTTATGGGCTTGTTACATTTCTAAGCCA  939

seq1  TCATTGTTTATTATATAATATTATCACTTTATAACCCACATTTCCTTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTATTATATAATATTATCACTTTATAACCCACATTTCCTTGTT  989

seq1  GATGAATGCTGAACTTTTTTTTTCTTATCTCCCACAAACTTCAAAGTATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGCTGAACTTTTTTTTTCTTATCTCCCACAAACTTCAAAGTATT  1039

seq1  AAGATGTATTAATAGATCGTTGTTGCCTTGCAACAGCAAAACAGTCTCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTATTAATAGATCGTTGTTGCCTTGCAACAGCAAAACAGTCTCAG  1089

seq1  AGTACAAGGCCTAACCTTGCTTTACTTGGGTGCTGTTGGGAAGCAGAAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGGCCTAACCTTGCTTTACTTGGGTGCTGTTGGGAAGCAGAAGA  1139

seq1  TATGAATTAAGGTCTTTGGAATTC  1170
      ||||||||||||||||||||||||
seq2  TATGAATTAAGGTCTTTGGAATTC  1163


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