BAC Information

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BAC

Clone NameB6Ng01-188H24
Chromosome3 (Build37)
Map Location 150,438,436 - 150,533,622
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188H24.bB6Ng01-188H24.g
ACCGA012784GA012785
length1,1041,120
definitionB6Ng01-188H24.b B6Ng01-188H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,438,436 - 150,439,539)(150,532,505 - 150,533,622)
sequence
gaattcaactcacattcagttgttagcggtgagagaaagaatacctcact
gtccaattaaaggaggaaacattgacactttagcagatatatgaatccct
ttcaattatagttgttagttagggttttattgctgtgaataagcaccata
tttacagcaattcttataaaggaagtcattttattggggccagcttacag
ttcagatgtttagtccattattgtcatggcagtaaacatggcagcataca
ggcaggcatggtgctggagaaggagctgagatttctacatcttgatccac
aggcagcagacatagttagaaattgtgcattgcttgagcctctgaaaacc
tcaagtctcacccatagagacacacttcctccaacaaggccacacttact
ccagcaagaagacagctcctaatgctgtcacccccttttgatcaagcaat
caaatctatgagtctatggggcatccttatccaagtcaccaaatatagtt
ctgtgtatgcatttcaaattggtgatgtttgctaaatctgctggtccctt
ctcacactataaacacaggtcttgtctcctttaccaaaaatgttatggga
gtgaaataatcctgttttgtttctgtccaagagaaaacacattgaaatat
gcatatgccttatttcccattatattctctaaacaccctatgtttctcca
atttagaaacttcatggaagtaaaggctcattgatatcaaaggttattct
caccattaggtgttgttgtaaactatcttttattattacagatttgctca
aaaccccttctagtttaacaagctgtggttttaattatttcccacagata
taatacaatctggaactggcattttcgaaatccaacttttgaaataaaca
tatgacatctctgttaatctggctctacaatgtaatggtcctacacgcta
attctcctctcaacatttctatttgcttgcaaagagaaatattccagatg
gaatgacttgatccccttaacgttttagtgtaaaaataaggagccgactt
tatatctaccattatttttcgtttctttttagattttcttttttatgtat
gaat

gaattccaatgaagtggatgggaattggctgttcttctttcttatacttg
ttcaatttagtattctcggctattctcatgattactttcaaggtaatgtg
acaaccctctaactttttgtttatcatagtcagatgatcttaacacccac
tccctgatatttaaacttagaaaatatgaagccagatttctttatgtatc
cagtgctataatttcagatgatattaataaatataagaactccaattttt
tatgaaagaaatgaaataattattgggaatggtgttgtgtgttccaagtt
tccacacaggagggaagtgagctttcattccatcgtcagtagccttactc
agtgaaatcatacttattttaattccgcagtaacataatggatagaaagc
tttcaggtatttatcacaatttccctgtgaatacagtcatcactgattct
atatttgaagtatatttttctagtgctacttacataaacatataataact
aataatttcttcctgatatcttagaggtgctaaaaatatttgctttgtgt
gcattccttgctcaatgatgttatcacaatgaaatctaaaaaataaaaaa
aaaattagaaaatctagtaggtatttaaagtgagatgattttgacacttt
cttaaattgattttaattgataatcaaatctttacaactgttgccatttc
attcatatttgaaatctcattggcattttataggaatatgtgaattactt
aactcatattttccttctctgaccaagtacaagtcaaggattggaactaa
atcaatttaacatggaagtcagtataagatgtacggctaagaaataatgt
ttttattatctatttgagatgactataaatatatgttagcgttttagctt
acttatacagcttattattttatatcttaattgttacactagaataaaat
gtattatgcatttttagaatgagagtatttatgcataagtttctaaattg
taagtttatttgtcaaggtggaagtcgtataaacaattaaaactggagct
cattccaaagtagaagatgctagatgccttctggtggtgatggaagctta
acagaactcctggaacttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150438436_150439539
seq2: B6Ng01-188H24.b_46_1149

seq1  GAATTCAACTCACATTCAGTTGTTAGCGGTGAGAGAAAGAATACCTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCACATTCAGTTGTTAGCGGTGAGAGAAAGAATACCTCACT  50

seq1  GTCCAATTAAAGGAGGAAACATTGACACTTTAGCAGATATATGAATCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATTAAAGGAGGAAACATTGACACTTTAGCAGATATATGAATCCCT  100

seq1  TTCAATTATAGTTGTTAGTTAGGGTTTTATTGCTGTGAATAAGCACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTATAGTTGTTAGTTAGGGTTTTATTGCTGTGAATAAGCACCATA  150

seq1  TTTACAGCAATTCTTATAAAGGAAGTCATTTTATTGGGGCCAGCTTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCAATTCTTATAAAGGAAGTCATTTTATTGGGGCCAGCTTACAG  200

seq1  TTCAGATGTTTAGTCCATTATTGTCATGGCAGTAAACATGGCAGCATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGTTTAGTCCATTATTGTCATGGCAGTAAACATGGCAGCATACA  250

seq1  GGCAGGCATGGTGCTGGAGAAGGAGCTGAGATTTCTACATCTTGATCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCATGGTGCTGGAGAAGGAGCTGAGATTTCTACATCTTGATCCAC  300

seq1  AGGCAGCAGACATAGTTAGAAATTGTGCATTGCTTGAGCCTCTGAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAGACATAGTTAGAAATTGTGCATTGCTTGAGCCTCTGAAAACC  350

seq1  TCAAGTCTCACCCATAGAGACACACTTCCTCCAACAAGGCCACACTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTCACCCATAGAGACACACTTCCTCCAACAAGGCCACACTTACT  400

seq1  CCAGCAAGAAGACAGCTCCTAATGCTGTCACCCCCTTTTGATCAAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGAAGACAGCTCCTAATGCTGTCACCCCCTTTTGATCAAGCAAT  450

seq1  CAAATCTATGAGTCTATGGGGCATCCTTATCCAAGTCACCAAATATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATGAGTCTATGGGGCATCCTTATCCAAGTCACCAAATATAGTT  500

seq1  CTGTGTATGCATTTCAAATTGGTGATGTTTGCTAAATCTGCTGGTCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGCATTTCAAATTGGTGATGTTTGCTAAATCTGCTGGTCCCTT  550

seq1  CTCACACTATAAACACAGGTCTTGTCTCCTTTACCAAAAATGTTATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTATAAACACAGGTCTTGTCTCCTTTACCAAAAATGTTATGGGA  600

seq1  GTGAAATAATCCTGTTTTGTTTCTGTCCAAGAGAAAACACATTGAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAATCCTGTTTTGTTTCTGTCCAAGAGAAAACACATTGAAATAT  650

seq1  GCATATGCCTTATTTCCCATTATATTCTCTAAACACCCTATGTTTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCCTTATTTCCCATTATATTCTCTAAACACCCTATGTTTCTCCA  700

seq1  ATTTAGAAACTTCATGGAAGTAAAGGCTCATTGATATCAAAGGTTATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAACTTCATGGAAGTAAAGGCTCATTGATATCAAAGGTTATTCT  750

seq1  CACCATTAGGTGTTGTTGTAAACTATCTTTTATTATTACAGATTTGCTC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCATTAGGTGTTGTTGTAAACTATCTTTTATTATTACAGATTTGCTCA  800

seq1  AAACCCCTTCTAGTTTAACAAGCTGTGGTTTTAATTATTTCCCACAGATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTTCTAGTTTAACAAGCTGTGGTTTTAATTATTTCCCACAGATA  850

seq1  TAATACAATCTGGAACTGGCATTTTCGAAATCCAACTTTTGAAATAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAATCTGGAACTGGCATTTTCGAAATCCAACTTTTGAAATAAACA  900

seq1  TATGACATCTCTGTTAATCTGGCTCTACAATGTAATGGTCCTACACGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGACATCTCTGTTAATCTGGCTCTACAATGTAATGGTCCTACACGCT-  949

seq1  AATTCTCCTCTCAACATTTCTATTTGCTTGCAAAGAGAAATATTCCAAGA  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATTCTCCTCTCAACATTTCTATTTGCTTGCAAAGAGAAATATTCC-AGA  998

seq1  TGGAATGACTTGATCCCCTTAACGTTTTAGTGGTAAAATAGGAGGCCGAC  1049
      ||||||||||||||||||||||||||||||||  |||||| |  ||||||
seq2  TGGAATGACTTGATCCCCTTAACGTTTTAGTGTAAAAATAAGGAGCCGAC  1048

seq1  TTTAATATCTACCAT--ATTTTCGTTTCTTTTTAGATTTTCTTTTTATGG  1097
      ||| |||||||||||   ||||||||||||||||||||||||||||   |
seq2  TTT-ATATCTACCATTATTTTTCGTTTCTTTTTAGATTTTCTTTTTTATG  1097

seq1  TATGAAT  1104
      |||||||
seq2  TATGAAT  1104


seq1: chr3_150532505_150533622
seq2: B6Ng01-188H24.g_62_1181 (reverse)

seq1  GTAAGTTC--AGAG-TCTGTT-AGCCTCCATCACCA-CAGGAGGCATCTA  45
      ||||||||   ||| |||||| ||| |||||||||| ||| |||||||| 
seq2  GTAAGTTCCAGGAGTTCTGTTAAGCTTCCATCACCACCAGAAGGCATCT-  49

seq1  ACCATCTTCTACTTTGGAATGAGCT-CAGTTTTAA-TGTTTATACGACTT  93
      | ||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AGCATCTTCTACTTTGGAATGAGCTCCAGTTTTAATTGTTTATACGACTT  99

seq1  CCACCTTTGACAAATAAACTTACAAATTTAGAAACCTTATGCATAAATAC  143
      ||||| ||||||||||||||||| |||||||||| |||||||||||||||
seq2  CCACC-TTGACAAATAAACTTAC-AATTTAGAAA-CTTATGCATAAATAC  146

seq1  TCTCATTTCTAAAAATGCATAATACATTTTATTCTAGTGTAACAATTAAG  193
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCA-TTCTAAAAATGCATAATACATTTTATTCTAGTGTAACAATTAAG  195

seq1  ATATAAAATAATAAGCTGTATAAGTAAGCTAAAACGCTAACATATATTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATAATAAGCTGTATAAGTAAGCTAAAACGCTAACATATATTTA  245

seq1  TAGTCATCTCAAATAGATAATAAAAACATTATTTCTTAGCCGTACATCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTCAAATAGATAATAAAAACATTATTTCTTAGCCGTACATCTT  295

seq1  ATACTGACTTCCATGTTAAATTGATTTAGTTCCAATCCTTGACTTGTACT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTTCCATGTTAAATTGATTTAGTTCCAATCCTTGACTTGTACT  345

seq1  TGGTCAGAGAAGGAAAATATGAGTTAAGTAATTCACATATTCCTATAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAGAAGGAAAATATGAGTTAAGTAATTCACATATTCCTATAAAA  395

seq1  TGCCAATGAGATTTCAAATATGAATGAAATGGCAACAGTTGTAAAGATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATGAGATTTCAAATATGAATGAAATGGCAACAGTTGTAAAGATTT  445

seq1  GATTATCAATTAAAATCAATTTAAGAAAGTGTCAAAATCATCTCACTTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCAATTAAAATCAATTTAAGAAAGTGTCAAAATCATCTCACTTTA  495

seq1  AATACCTACTAGATTTTCTAATTTTTTTTTTATTTTTTAGATTTCATTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTACTAGATTTTCTAATTTTTTTTTTATTTTTTAGATTTCATTGT  545

seq1  GATAACATCATTGAGCAAGGAATGCACACAAAGCAAATATTTTTAGCACC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATCATTGAGCAAGGAATGCACACAAAGCAAATATTTTTAGCACC  595

seq1  TCTAAGATATCAGGAAGAAATTATTAGTTATTATATGTTTATGTAAGTAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATATCAGGAAGAAATTATTAGTTATTATATGTTTATGTAAGTAG  645

seq1  CACTAGAAAAATATACTTCAAATATAGAATCAGTGATGACTGTATTCACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAAAATATACTTCAAATATAGAATCAGTGATGACTGTATTCACA  695

seq1  GGGAAATTGTGATAAATACCTGAAAGCTTTCTATCCATTATGTTACTGCG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTGTGATAAATACCTGAAAGCTTTCTATCCATTATGTTACTGCG  745

seq1  GAATTAAAATAAGTATGATTTCACTGAGTAAGGCTACTGACGATGGAATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAATAAGTATGATTTCACTGAGTAAGGCTACTGACGATGGAATG  795

seq1  AAAGCTCACTTCCCTCCTGTGTGGAAACTTGGAACACACAACACCATTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCACTTCCCTCCTGTGTGGAAACTTGGAACACACAACACCATTCC  845

seq1  CAATAATTATTTCATTTCTTTCATAAAAAATTGGAGTTCTTATATTTATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTATTTCATTTCTTTCATAAAAAATTGGAGTTCTTATATTTATT  895

seq1  AATATCATCTGAAATTATAGCACTGGATACATAAAGAAATCTGGCTTCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATCTGAAATTATAGCACTGGATACATAAAGAAATCTGGCTTCAT  945

seq1  ATTTTCTAAGTTTAAATATCAGGGAGTGGGTGTTAAGATCATCTGACTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAAGTTTAAATATCAGGGAGTGGGTGTTAAGATCATCTGACTAT  995

seq1  GATAAACAAAAAGTTAGAGGGTTGTCACATTACCTTGAAAGTAATCATGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAAAAAGTTAGAGGGTTGTCACATTACCTTGAAAGTAATCATGA  1045

seq1  GAATAGCCGAGAATACTAAATTGAACAAGTATAAGAAAGAAGAACAGCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCCGAGAATACTAAATTGAACAAGTATAAGAAAGAAGAACAGCCA  1095

seq1  ATTCCCATCCACTTCATTGGAATTC  1118
      |||||||||||||||||||||||||
seq2  ATTCCCATCCACTTCATTGGAATTC  1120


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