BAC Information

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BAC

Clone NameB6Ng01-188M15
Chromosome3 (Build37)
Map Location 148,750,593 - 148,888,151
singlet/doubletdoublet
Overlap geneLOC668893
Upstream geneLOC100040354, Lphn2, LOC100040368
Downstream geneEG381483, LOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188M15.bB6Ng01-188M15.g
ACCGA012991GA012992
length1,1901,032
definitionB6Ng01-188M15.b B6Ng01-188M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,886,990 - 148,888,151)(148,750,593 - 148,751,608)
sequence
gaattctcttttcccctcaatacaaggaaagagctagtgttggaagctga
ttttagttccctagttcaggaacacactagaataggatctcttgctcagg
atttctcctgaggatcctcatattatagtgtgtgtgtgtgtgtgtgtgta
tgtgtgtaatattttccatctgaagaaattatttttctcttaagaattaa
ttccaattttataacatcaggaacatagaactgaatgaaaaatgtttaca
ttgtatctttgtcacaattattttaagtcagtatatttcaaatacttacc
atatgccggacactggattagacccccagagacaggatgatgaggaagat
tggtatagcctgctccttcatggaaaataaagacatatattgctattgta
acttaaataaacaatgtgagaaaaattacagctatcttaactggattaag
cagggtaacctgaaaaggctggacacatttacaaaagaatggcctggttg
tgcaaattgtgagaacagagagaacattctagaaccttccagagaggaca
gaatgtgcaagacggtcaagaatccaagaaagtgtaaaatgcatagaacc
tatttcttcagtttcatctcagcaagaaaagagtgcactgaagagtttcc
aggagaaaaaattaggccggctatcaccggcctggcaccacttttactgt
gtgggaaggagtccaagtgcaactgtctctaaacactgtaatagttaaag
tacaattacacttgaatgtgcccctgcagtacaccagcaagtacatgtgc
ttgcaagtctgactgtaagcacaggctgaggaaaaattggggaacggaac
tggtagtctgccaggctcttctgcaccctctaaaaccaggccccttgttt
cttgaattgacttgaattgactatgcagagaattatgttgaacagttctc
agcttgtagtgctactgttccctattaccacttaagaaacttaattttcc
tgtgcaagtagctacaatgagaccagtgtcgagaagaaatggtttcagtc
tttttccaaatacccttggattcccttcgcttccttaaagccaagttcac
acgatagttggggctttggtaccagattgtaaccaagtttgttagcggat
gagttaaagaaaaccgttcattttagatccgtgctagtat
gaattcttgccagagaaggcgagttcactgttctatggaggacaagccat
cccagttctactccggaggtcaaaatgtccatccttgcccccgccctcct
agactgcacttcagcacttgcccccttcacagggaacggtaagagtttaa
ttatttactaaaatttgtgtgtcagaaaattcaagcagttgagctgtgga
gaaagctcagtggataaggtgctggcgcaggagaggaaccacattagaaa
tcggggaagggggtgagggcacacaatcccgggtccaggaaggtggagac
aactagaaccagaggctcagcttacttttccagttccaggctggaccctg
tcccaataaacaaagtggaggggcacctagggagtcgtcctctggcgcgt
gaaaccccacaaccaccgccaccacgatgaacctcgcgcatacacacatg
cgtgcacacacacacacacacacacacacatacacacacactcaaaatag
actttaaatttcaagaagggtgtaactagaggaaggagaatcaccaattc
gtataaatccagtctcacaaaaccacccacaaaaccttctttatcatttt
ctttattgcctccactttcctcttgaagggagcaggaggacacattggcg
gtgcttcggtttgatctgttcccattgtccccggtgtcgttgtatagagt
cttagcgtgctttttaaaaattaattaattaattaattatttttttttta
atacctgcctctttctaaaagctctcggagactctttaaaatcaactaga
agtcaaatagtctcaattaggtcccgagcggcaaattcagtctcagttag
agattaaacaatggggggaaaaagcgagggctaacgagaaggctgctttt
tcattacccctatctgattttcattagccctaattcacgcttattaatta
ttccggtcttgatgaaatcatcaattgcaggcaaggccaggctccatgga
cggctaacatttgggaaataggtctttactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148886990_148888151
seq2: B6Ng01-188M15.b_49_1238 (reverse)

seq1  ATACTAGCACGG-TCTAAATTGAA---TGTTCTTTTAATCTTC--CTA--  42
      |||||||||||| |||||| ||||   | |||||| | || ||  |||  
seq2  ATACTAGCACGGATCTAAAATGAACGGTTTTCTTTAACTCATCCGCTAAC  50

seq1  CAACTT-GTTACAATCTGGTACC-AAGCCC--AC-ATC-TGTG-ACCTGG  85
       ||||| |||||||||||||||| ||||||  || ||| |||| || |||
seq2  AAACTTGGTTACAATCTGGTACCAAAGCCCCAACTATCGTGTGAACTTGG  100

seq1  C-TTAAGG-AGCGGAGGGATTC--AGGGTATTTGG-AAAAGACTGAAACC  130
      | |||||| |||| ||||| ||  ||||||||||| ||||||||||||||
seq2  CTTTAAGGAAGCGAAGGGAATCCAAGGGTATTTGGAAAAAGACTGAAACC  150

seq1  ATT--CTGTCGACACTGGTCTCATTGTAGCTACTAGCACAGGAAAATTAA  178
      |||   | |||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTCTTCTCGACACTGGTCTCATTGTAGCTACTTGCACAGGAAAATTAA  200

seq1  GTT--CTAAGT-GTAATAGGGAACAGTAGCACTACAGCCTGAGAACTGTT  225
      |||   ||||| ||||||||||||||||||||||||  ||||||||||||
seq2  GTTTCTTAAGTGGTAATAGGGAACAGTAGCACTACAAGCTGAGAACTGTT  250

seq1  CAACATAATTCTCTGCATAGTCAATTCAAGTCAATTCAAGAAACAA-GGG  274
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAACATAATTCTCTGCATAGTCAATTCAAGTCAATTCAAGAAACAAGGGG  300

seq1  CCTGGTTTTAGAGGGTGCAGAAGAGCCTGGCAGACTACCAGTTCCGTTCC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTTAGAGGGTGCAGAAGAGCCTGGCAGACTACCAGTTCCGTTCC  350

seq1  CC-ATTTTTCCTCAGCCTGTGCTTACAGTCAGACTTGCAAGCACATGTAC  373
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTCCTCAGCCTGTGCTTACAGTCAGACTTGCAAGCACATGTAC  400

seq1  TTGCTGGTGTACTGCA-GGGCACATTCAAGTGTAATTGTACTTTAACTAT  422
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGCTGGTGTACTGCAGGGGCACATTCAAGTGTAATTGTACTTTAACTAT  450

seq1  TACAGTGTTTAGAGACAGTTGCACTTGGACTCCTTCCCACACAGTAAAAG  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTTTAGAGACAGTTGCACTTGGACTCCTTCCCACACAGTAAAAG  500

seq1  TGGTGCCAGGCCGGTGATAGCCGGCCTAATTTTTTCTCCTGGAAACTCTT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCAGGCCGGTGATAGCCGGCCTAATTTTTTCTCCTGGAAACTCTT  550

seq1  CAGTGCACTCTTTTCTTGCTGAGATGAAACTGAAGAAATAGGTTCTATGC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCACTCTTTTCTTGCTGAGATGAAACTGAAGAAATAGGTTCTATGC  600

seq1  ATTTTACACTTTCTTGGATTCTTGACCGTCTTGCACATTCTGTCCTCTCT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACACTTTCTTGGATTCTTGACCGTCTTGCACATTCTGTCCTCTCT  650

seq1  GGAAGGTTCTAGAATGTTCTCTCTGTTCTCACAATTTGCACAACCAGGCC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTCTAGAATGTTCTCTCTGTTCTCACAATTTGCACAACCAGGCC  700

seq1  ATTCTTTTGTAAATGTGTCCAGCCTTTTCAGGTTACCCTGCTTAATCCAG  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGTAAATGTGTCCAGCCTTTTCAGGTTACCCTGCTTAATCCAG  750

seq1  TTAAGATAGCTGTAATTTTTCTCACATTGTTTATTTAAGTTACAATAGCA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAGCTGTAATTTTTCTCACATTGTTTATTTAAGTTACAATAGCA  800

seq1  ATATATGTCTTTATTTTCCATGAAGGAGCAGGCTATACCAATCTTCCTCA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCTTTATTTTCCATGAAGGAGCAGGCTATACCAATCTTCCTCA  850

seq1  TCATCCTGTCTCTGGGGGTCTAATCCAGTGTCCGGCATATGGTAAGTATT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGTCTCTGGGGGTCTAATCCAGTGTCCGGCATATGGTAAGTATT  900

seq1  TGAAATATACTGACTTAAAATAATTGTGACAAAGATACAATGTAAACATT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATACTGACTTAAAATAATTGTGACAAAGATACAATGTAAACATT  950

seq1  TTTCATTCAGTTCTATGTTCCTGATGTTATAAAATTGGAATTAATTCTTA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCAGTTCTATGTTCCTGATGTTATAAAATTGGAATTAATTCTTA  1000

seq1  AGAGAAAAATAATTTCTTCAGATGGAAAATATTACACACATACACACACA  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAATAATTTCTTCAGATGGAAAATATTACACACATACACACACA  1050

seq1  CACACACACACACTATAATATGAGGATCCTCAGGAGAAATCCTGAGCAAG  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTATAATATGAGGATCCTCAGGAGAAATCCTGAGCAAG  1100

seq1  AGATCCTATTCTAGTGTGTTCCTGAACTAGGGAACTAAAATCAGCTTCCA  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTATTCTAGTGTGTTCCTGAACTAGGGAACTAAAATCAGCTTCCA  1150

seq1  ACACTAGCTCTTTCCTTGTATTGAGGGGAAAAGAGAATTC  1162
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCTCTTTCCTTGTATTGAGGGGAAAAGAGAATTC  1190

seq1: chr3_148750593_148751608
seq2: B6Ng01-188M15.g_69_1100

seq1  GAATTCTTGCCAGAGAAGGCGAGTTCACTGTTCTATGGAGGACAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCAGAGAAGGCGAGTTCACTGTTCTATGGAGGACAAGCCAT  50

seq1  CCCAGTTCTACTCCGGAGGTCAAAATGTCCATCCTTGCCCCCGCCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCTACTCCGGAGGTCAAAATGTCCATCCTTGCCCCCGCCCTCCT  100

seq1  AGACTGCACTTCAGCACTTGCCCCCTTCACAGGGAACGGTAAGAGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCACTTCAGCACTTGCCCCCTTCACAGGGAACGGTAAGAGTTTAA  150

seq1  TTATTTACTAAAATTTGTGTGTCAGAAAATTCAAGCAGTTGAGCTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTAAAATTTGTGTGTCAGAAAATTCAAGCAGTTGAGCTGTGGA  200

seq1  GAAAGCTCAGTGGATAAGGTGCTGGCGCAGGAGAGGAACCACATTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCAGTGGATAAGGTGCTGGCGCAGGAGAGGAACCACATTAGAAA  250

seq1  TCGGGGAAGGGGGTGAGGGCACACAATCCCGGGTCCAGGAAGGTGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGAAGGGGGTGAGGGCACACAATCCCGGGTCCAGGAAGGTGGAGAC  300

seq1  AACTAGAACCAGAGGCTCAGCTTACTTTTCCAGTTCCAGGCTGGACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAACCAGAGGCTCAGCTTACTTTTCCAGTTCCAGGCTGGACCCTG  350

seq1  TCCCAATAAACAAAGTGGAGGGGCACCTAGGGAGTCGTCCTCTGGCGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATAAACAAAGTGGAGGGGCACCTAGGGAGTCGTCCTCTGGCGCGT  400

seq1  GAAACCCCACAACCACCGCCACCACGATGAACCTCGCGCATACACACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCACAACCACCGCCACCACGATGAACCTCGCGCATACACACATG  450

seq1  CGTGCACACACACACACACACACACACACATACACACACACTCAAAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACACACACACACACACACACACACATACACACACACTCAAAATAG  500

seq1  ACTTTAAATTTCAAGAAGGGTGTAACTAGAGGAAGGAGAATCACCAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATTTCAAGAAGGGTGTAACTAGAGGAAGGAGAATCACCAATTC  550

seq1  GTATAAATCCAGTCTCACAAAACCACCCACAAAACCTTCTTTATCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATCCAGTCTCACAAAACCACCCACAAAACCTTCTTTATCATTTT  600

seq1  CTTTATTGCCTCCACTTTCCTCTTGAAGGGAGCAGGAGGACACATTGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGCCTCCACTTTCCTCTTGAAGGGAGCAGGAGGACACATTGGCG  650

seq1  GTGCTTCGGTTTGATCTGTTCCCATTGTCCCCGGTGTCGTTGTATAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCGGTTTGATCTGTTCCCATTGTCCCCGGTGTCGTTGTATAGAGT  700

seq1  CTTAGCGTGCTTTTTAAAAATTAATTAATTAATTAATTATTTTTTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGTGCTTTTTAAAAATTAATTAATTAATTAATTATTTTTTTTTTA  750

seq1  ATACCTGCCTCTTTCTAAAAGCTCTCGGAGACTCTTTAAAATCAACTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGCCTCTTTCTAAAAGCTCTCGGAGACTCTTTAAAATCAACTAGA  800

seq1  AGTCAAATAGTCTCAATTAGGTCCCGAGCGGCAAATTCAGTCTCAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATAGTCTCAATTAGGTCCCGAGCGGCAAATTCAGTCTCAGTTAG  850

seq1  AGATTAAACAAT-GGGGGAAAAAGCGA-GGCTAACGAGAAGGCTGC-TTT  897
      |||||||||||| |||||||||||||| |||||||||||||||||| |||
seq2  AGATTAAACAATGGGGGGAAAAAGCGAGGGCTAACGAGAAGGCTGCTTTT  900

seq1  TCATTA-CCCTATCTGA-TTTCATTAG-CCTAATTCACGCTTATTAATTA  944
      |||||| |||||||||| ||||||||| ||||||||||||||||||||||
seq2  TCATTACCCCTATCTGATTTTCATTAGCCCTAATTCACGCTTATTAATTA  950

seq1  T--CGGTC-TGATGAAATCATCAA-TGCAGGCAA-GCCAGGCT-CAT-GA  987
      |  ||||| ||||||||||||||| ||||||||| |||||||| ||| ||
seq2  TTCCGGTCTTGATGAAATCATCAATTGCAGGCAAGGCCAGGCTCCATGGA  1000

seq1  CGGCT-ACATTTGGGAAATA-GTC-TTACTGA  1016
      ||||| |||||||||||||| ||| |||||||
seq2  CGGCTAACATTTGGGAAATAGGTCTTTACTGA  1032