BAC Information

Click to search

BAC

Clone NameB6Ng01-189A05
Chromosome3 (Build37)
Map Location 144,291,067 - 144,292,064
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A05.bB6Ng01-189A05.g
ACCGA013149GA013150
length1,1641,008
definitionB6Ng01-189A05.b B6Ng01-189A05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaac
atacttaatcatcagggaaatgcaaatcaaaacaacactgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcgtggatgtggagaacgaggaacactcctccattgttggtgggaatg
caagcttgtacaaccactctggaaatcagtctagcggttcctcagaaaat
tggacatagtactaccagaggatcccgcaatacctctcctgggcatatat
ccagaagatgccccaactggtaagaaggacacatgctccactatgttcat
agcagccttatttataatagccagaagctggaaagaacccagatgcccct
caacagaggaatggatacagaaaatgtggtacatctacacaatggagtac
tactcagctattaaaaagaatgaatttatgaaattcctagccaaatggat
ggacctggagggcatcatcctgagtgaggtaacacaataataaaggaact
cacacaatatgtactcactgataagtggatattaccccaaaacctaggat
acccaagatataagatacaatttcctaaacacatgaaactcaagaaaaat
gaagactgaagtgtggacactatgccccttcttagaagtgggaacaaaac
acccttggaaggagttacagagacaaagtttggagttgagataaaaggat
ggaccatgtagagactgccatatccagggatccaccccataatcagcatc
caaatgttgacaccattgcatacactagcaagattttatggaaaggaccg
agatgtagctgtctcttgtgagactatgcccggggcctagcaaacacagt
agtggatgctcacaagcagctaatggatggatcacagggccccattggag
gagctagagaaagtacccaaggagctaaagggatctgcaaccctatagtg
aacacatatgactaaccagtaccccggagctctgactctagctgcatatg
tatcaaagatggcctagtcgcatcactggaaagaagagcccattggacat
gccaactttatattgcccagtacaggtaacgcaggtctataaggggagtg
gtggtaaggggcag
gaattctggcgaactttagctagcagcacaccagcaggaaatatgtggtc
aggaggagagaggagctgaaacttattccaacacccagtctgctatctgc
acagcctgcctagctgcctaccaccctgtctgtgtttatctttgagaaca
ggacgcctggagggcagacgttgctcttcatgatctcaaggtgaaaccac
ccgtatccaaaatggccactcaaatgatttctagaagaccacagtcttca
tcattctccaatttcatgctaagtgacatgccaccagccaccattgcagg
aaaccccagaccatgaaagtgttctgggaaagccctgcttatttcaggaa
gactataaatgttcctccccttcactggcctgcccttcccccattcctct
ttacctccttctgtcccgagaagccgacttgtgagctacttctcaagacg
aggctcccacttctttcttcagccactaacaaatctgtgttattgttacc
caggctcagttttgtgctttggtttttgacagacacaaagggggaaaatg
agttgagaaggtttctctcttaagagaagaccctcagaattgttgtcttg
cttcttctcaccatgctggcatttggggttttgcctgacttcctctgcta
gcacagttcctgtggtctggcttctcttcccggactccagccactactga
gtttgggtgacatcactccctgcccttgaccgtcacaggcaggagtggtg
gttgacagtggcttgcagtcacaagttattgatgcctccccgtctgttga
tggctcccttagctctgtcagcatgctatgggtttgaagcatggatgttt
ccccaaagcccatatcctgaaaggttttgatagttctgtgatgctgagac
agagctttgaagaggctagtactttagttgggaggaaggtagtttatggg
gtgtgttccttaagtatagttatgggaacccttaactactttcctgtcct
cttctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144291067_144292064
seq2: B6Ng01-189A05.g_66_1073

seq1  GAATTCTGGCGAACTTTAGCTAGCAGCACACCAGCAGGAAATATGTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCGAACTTTAGCTAGCAGCACACCAGCAGGAAATATGTGGTC  50

seq1  AGGAGGAGAGAGGAGCTGAAACTTATTCCAACACCCAGTCTGCTATCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAGAGGAGCTGAAACTTATTCCAACACCCAGTCTGCTATCTGC  100

seq1  ACAGCCTGCCTAGCTGCCTACCACCCTGTCTGTGTTTATCTTTGAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGCCTAGCTGCCTACCACCCTGTCTGTGTTTATCTTTGAGAACA  150

seq1  GGACGCCTGGAGGGCAGACGTTGCTCTTCATGATCTCAAGGTGAAACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCCTGGAGGGCAGACGTTGCTCTTCATGATCTCAAGGTGAAACCAC  200

seq1  CCGTATCCAAAATGGCCACTCAAATGATTTCTAGAAGACCACAGTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATCCAAAATGGCCACTCAAATGATTTCTAGAAGACCACAGTCTTCA  250

seq1  TCATTCTCCAATTTCATGCTAAGTGACATGCCACCAGCCACCATTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCCAATTTCATGCTAAGTGACATGCCACCAGCCACCATTGCAGG  300

seq1  AAACCCCAGACCATGAAAGTGTTCTGGGAAAGCCCTGCTTATTTCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAGACCATGAAAGTGTTCTGGGAAAGCCCTGCTTATTTCAGGAA  350

seq1  GACTATAAATGTTCCTCCCCTTCACTGGCCTGCCCTTCCCCCATTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAAATGTTCCTCCCCTTCACTGGCCTGCCCTTCCCCCATTCCTCT  400

seq1  TTACCTCCTTCTGTCCCGAGAAGCCGACTTGTGAGCTACTTCTCAAGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCTTCTGTCCCGAGAAGCCGACTTGTGAGCTACTTCTCAAGACG  450

seq1  AGGCTCCCACTTCTTTCTTCAGCCACTAACAAATCTGTGTTATTGTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCCACTTCTTTCTTCAGCCACTAACAAATCTGTGTTATTGTTACC  500

seq1  CAGGCTCAGTTTTGTGCTTTGGTTTTTGACAGACACAAAGGGGGAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGTTTTGTGCTTTGGTTTTTGACAGACACAAAGGGGGAAAATG  550

seq1  AGTTGAGAAGGTTTCTCTCTTAAGAGAAGACCCTCAGAATTGTTGTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAAGGTTTCTCTCTTAAGAGAAGACCCTCAGAATTGTTGTCTTG  600

seq1  CTTCTTCTCACCATGCTGGCATTTGGGGTTTTGCCTGACTTCCTCTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCACCATGCTGGCATTTGGGGTTTTGCCTGACTTCCTCTGCTA  650

seq1  GCACAGTTCCTGTGGTCTGGCTTCTCTTCCCGGACTCCAGCCACTACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTCCTGTGGTCTGGCTTCTCTTCCCGGACTCCAGCCACTACTGA  700

seq1  GTTTGGGTGACATCACTCCCTGCCCTTGACCGTCACAGGCAGGAGTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTGACATCACTCCCTGCCCTTGACCGTCACAGGCAGGAGTGGTG  750

seq1  GTTGACAGTGGCTTGCAGTCACAAGTTATTGATGCCTCCCCGTCTGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGTGGCTTGCAGTCACAAGTTATTGATGCCTCCCCGTCTGTTGA  800

seq1  TGGCTCCCTTAGCTCTGTCAGCATGCTAT-GGTTTGAAGCATGGATGTTT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGCTCCCTTAGCTCTGTCAGCATGCTATGGGTTTGAAGCATGGATGTTT  850

seq1  CCCCAAAGCCCATATCCTGAA--GGTTTGATAG-TCTGTGATGCTGAGAC  896
      |||||||||||||||||||||  | |||||||| ||||||||||||||||
seq2  CCCCAAAGCCCATATCCTGAAAGGTTTTGATAGTTCTGTGATGCTGAGAC  900

seq1  AGAGCTTTGAAGAGGCTAGTAC-TTAGTT-GGAGGAAGTTAGGTTATGGG  944
      |||||||||||||||||||||| |||||| |||||||| ||| |||||||
seq2  AGAGCTTTGAAGAGGCTAGTACTTTAGTTGGGAGGAAGGTAGTTTATGGG  950

seq1  GTGTG-TCCTTAAGTATAG-TATGGGAACCC-TAACTAC-TTCCTGTCCT  990
      ||||| ||||||||||||| ||||||||||| ||||||| ||||||||||
seq2  GTGTGTTCCTTAAGTATAGTTATGGGAACCCTTAACTACTTTCCTGTCCT  1000

seq1  CCTCTGAT  998
      | ||||||
seq2  CTTCTGAT  1008