BAC Information

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BAC

Clone NameB6Ng01-189E02
Chromosome3 (Build37)
Map Location 17,916,714 - 18,016,175
singlet/doubletdoublet
Overlap geneBhlhb5, Cyp7b1
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508
Downstream geneLOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189E02.bB6Ng01-189E02.g
ACCGA013327GA013328
length928918
definitionB6Ng01-189E02.b B6Ng01-189E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,916,714 - 17,917,641)(18,015,456 - 18,016,175)
sequence
gaattcttggttcttccagcaccttgactgcctgggtgcttgctgccctg
ctatctgccatgatgataatggactgaacctctgaaactgtaagccaacc
acaatcaaatgtttgcctttatgagagttgccttggtcatggtgtctgtt
catagcaatgaaactctaactaagataacatactagtgaatctatggcca
catttctaattagttctttaacattaattctaagatgtgtttttattgag
tcaaagtgtgtccgttcaaaatttcaacacactatttattttttattttt
atattatttgttttacatttaacaaatgtatgcccaccagaagcatgacg
gtcatactcttttctttgtttcaggaattttaacactcattttagtgttg
ttgttgctttttaaagataatagttttatcttaaatacccatggaaggag
ttgcagagacaaagtttggagctgagacagaaagaaagaccatccagaga
ctgccccacggggggatccatcccatatacaaccaccaaacccagacact
attgtatatgccagaaagattttgcttacaggaccctgacatagctttct
cttgtgagtctatgccaatgcctggcaaatacagaagtggatgttcacag
tcatctattggatggaacacaggcccctaatgaaggagctagagaaagta
cccaaggagttaaaggggtctgcaaccctataggaggaagaacgatatga
actaacgagtacccaacagagctgtgcctctagttgcatatgtagcagag
gatggcttagtcggccatcaatgggaggaaaggcccttggtattgcgaag
atcatatgccccagtacaggggaatgccagggccaggaagcagagggggt
aggttggggagcaggtcactggggaagg
gaattcataatgactatgaataaagtactcagtttcttttaagttataat
taactgccctcaaaatcttttcaacttcctaacttttagtgttatatcta
aatcctaccaacaaacctagggtcacctacatttcttcaatgttattctc
tgaagatgattttacagcttacaactgtggctctcatttgttttgagttc
ttctgtataaaaatcactgtcactcatgttttcacatataatcacagctg
ttataacccttgttgaaaaactaccatctctccattgagctgtgtttgct
agttgattgtatttatatgtctacatctggatttcttactctcctgttat
ctatgttactattctcttcattagtattactctctcagttactgcagcat
tatgttcacatgatgtcagatggtatggatcatcccattctcttctcttt
caagattaaattgactatttgaggggttttttccagacaaaattaaaagt
ctatttatttacattcacagaataatttatggacacttaagaatgtttgc
atttttctccaatccagatttgagcttttcttatatagactttatacata
tttgtttaacttatacctaagtctgaatttttgtagtaaattaaagcata
atatttcattttgtacttatatatgatactatacttttaatttcaaatat
cagttattcattgcaggtttatgagaaaacaactagtttttttaaggtta
cattttgtattttattgattttattttatgtatgtgtatttcctacatgt
atatatgtttgtcacatgcatatctggtgcctatgtaggccataagtggt
caaatacaccctgggcctagaattataactggttgtgatggttttgcctg
acttgagtttttattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17916714_17917641
seq2: B6Ng01-189E02.b_45_972

seq1  GAATTCTTGGTTCTTCCAGCACCTTGACTGCCTGGGTGCTTGCTGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTCTTCCAGCACCTTGACTGCCTGGGTGCTTGCTGCCCTG  50

seq1  CTATCTGCCATGATGATAATGGACTGAACCTCTGAAACTGTAAGCCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCCATGATGATAATGGACTGAACCTCTGAAACTGTAAGCCAACC  100

seq1  ACAATCAAATGTTTGCCTTTATGAGAGTTGCCTTGGTCATGGTGTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAAATGTTTGCCTTTATGAGAGTTGCCTTGGTCATGGTGTCTGTT  150

seq1  CATAGCAATGAAACTCTAACTAAGATAACATACTAGTGAATCTATGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAATGAAACTCTAACTAAGATAACATACTAGTGAATCTATGGCCA  200

seq1  CATTTCTAATTAGTTCTTTAACATTAATTCTAAGATGTGTTTTTATTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAATTAGTTCTTTAACATTAATTCTAAGATGTGTTTTTATTGAG  250

seq1  TCAAAGTGTGTCCGTTCAAAATTTCAACACACTATTTATTTTTTATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGTGTCCGTTCAAAATTTCAACACACTATTTATTTTTTATTTTT  300

seq1  ATATTATTTGTTTTACATTTAACAAATGTATGCCCACCAGAAGCATGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTGTTTTACATTTAACAAATGTATGCCCACCAGAAGCATGACG  350

seq1  GTCATACTCTTTTCTTTGTTTCAGGAATTTTAACACTCATTTTAGTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACTCTTTTCTTTGTTTCAGGAATTTTAACACTCATTTTAGTGTTG  400

seq1  TTGTTGCTTTTTAAAGATAATAGTTTTATCTTAAATACCCATGGAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTTTTTAAAGATAATAGTTTTATCTTAAATACCCATGGAAGGAG  450

seq1  TTGCAGAGACAAAGTTTGGAGCTGAGACAGAAAGAAAGACCATCCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGACAAAGTTTGGAGCTGAGACAGAAAGAAAGACCATCCAGAGA  500

seq1  CTGCCCCACGGGGGGATCCATCCCATATACAACCACCAAACCCAGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCACGGGGGGATCCATCCCATATACAACCACCAAACCCAGACACT  550

seq1  ATTGTATATGCCAGAAAGATTTTGCTTACAGGACCCTGACATAGCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATGCCAGAAAGATTTTGCTTACAGGACCCTGACATAGCTTTCT  600

seq1  CTTGTGAGTCTATGCCAATGCCTGGCAAATACAGAAGTGGATGTTCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGTCTATGCCAATGCCTGGCAAATACAGAAGTGGATGTTCACAG  650

seq1  TCATCTATTGGATGGAACACAGGCCCCTAATGAAGGAGCTAGAGAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTGGATGGAACACAGGCCCCTAATGAAGGAGCTAGAGAAAGTA  700

seq1  CCCAAGGAGTTAAAGGGGTCTGCAACCCTATAGGAGGAAGAACGATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGTTAAAGGGGTCTGCAACCCTATAGGAGGAAGAACGATATGA  750

seq1  ACTAACGAGTACCCAACAGAGCTGTGCCTCTAGTTGCATATGTAGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACGAGTACCCAACAGAGCTGTGCCTCTAGTTGCATATGTAGCAGAG  800

seq1  GATGGCTTAGTCGGCCATCAATGGGAGGAAAGGCCCTTGGTATTGCGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTAGTCGGCCATCAATGGGAGGAAAGGCCCTTGGTATTGCGAAG  850

seq1  ATCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGGGGG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCA-GAGGGGG  899

seq1  TAGGTTGGGGAGCAGGGCAGT-GGGAAGG  928
      |||||||||||||||| || | |||||||
seq2  TAGGTTGGGGAGCAGGTCACTGGGGAAGG  928

seq1: chr3_18015456_18016175
seq2: B6Ng01-189E02.g_68_787 (reverse)

seq1  AAACCTGCAATGAATAACTGATATTTGAAATTAAAAGTATAGTATCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCAATGAATAACTGATATTTGAAATTAAAAGTATAGTATCATAT  50

seq1  ATAAGTACAAAATGAAATATTATGCTTTAATTTACTACAAAAATTCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAAAATGAAATATTATGCTTTAATTTACTACAAAAATTCAGAC  100

seq1  TTAGGTATAAGTTAAACAAATATGTATAAAGTCTATATAAGAAAAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATAAGTTAAACAAATATGTATAAAGTCTATATAAGAAAAGCTCA  150

seq1  AATCTGGATTGGAGAAAAATGCAAACATTCTTAAGTGTCCATAAATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGATTGGAGAAAAATGCAAACATTCTTAAGTGTCCATAAATTATT  200

seq1  CTGTGAATGTAAATAAATAGACTTTTAATTTTGTCTGGAAAAAACCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGTAAATAAATAGACTTTTAATTTTGTCTGGAAAAAACCCCTC  250

seq1  AAATAGTCAATTTAATCTTGAAAGAGAAGAGAATGGGATGATCCATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCAATTTAATCTTGAAAGAGAAGAGAATGGGATGATCCATACCA  300

seq1  TCTGACATCATGTGAACATAATGCTGCAGTAACTGAGAGAGTAATACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATCATGTGAACATAATGCTGCAGTAACTGAGAGAGTAATACTAA  350

seq1  TGAAGAGAATAGTAACATAGATAACAGGAGAGTAAGAAATCCAGATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAATAGTAACATAGATAACAGGAGAGTAAGAAATCCAGATGTAG  400

seq1  ACATATAAATACAATCAACTAGCAAACACAGCTCAATGGAGAGATGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAATACAATCAACTAGCAAACACAGCTCAATGGAGAGATGGTAG  450

seq1  TTTTTCAACAAGGGTTATAACAGCTGTGATTATATGTGAAAACATGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACAAGGGTTATAACAGCTGTGATTATATGTGAAAACATGAGTG  500

seq1  ACAGTGATTTTTATACAGAAGAACTCAAAACAAATGAGAGCCACAGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTTTTATACAGAAGAACTCAAAACAAATGAGAGCCACAGTTGT  550

seq1  AAGCTGTAAAATCATCTTCAGAGAATAACATTGAAGAAATGTAGGTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAAAATCATCTTCAGAGAATAACATTGAAGAAATGTAGGTGACC  600

seq1  CTAGGTTTGTTGGTAGGATTTAGATATAACACTAAAAGTTAGGAAGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTGTTGGTAGGATTTAGATATAACACTAAAAGTTAGGAAGTTGA  650

seq1  AAAGATTTTGAGGGCAGTTAATTATAACTTAAAAGAAACTGAGTACTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTGAGGGCAGTTAATTATAACTTAAAAGAAACTGAGTACTTTA  700

seq1  TTCATAGTCATTATGAATTC  720
      ||||||||||||||||||||
seq2  TTCATAGTCATTATGAATTC  720