BAC Information

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BAC

Clone NameB6Ng01-189H02
Chromosome3 (Build37)
Map Location 38,178,725 - 38,179,668
singlet/doubletsinglet
Overlap genenone
Upstream geneCetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Downstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H02.bB6Ng01-189H02.g
ACCGA013463GA013464
length9511,172
definitionB6Ng01-189H02.b B6Ng01-189H02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcacttgagaggcagaggcaggcagatttctgagttcgaggc
cagcttgatctacagagtgagttccaggaagcagagttatacagagaaac
cctgtcttgaaacaaaacaaaacaaaacaaccaataaaataaaattaaaa
atctgcattgaatattagaaatacagattcctgtgcatgtcgggggattt
gtgcatgtgccccctgtcttagcctcttaacacatctccataagtctgtc
ttcatagtgctccatattctgttcctgaagccagagggaatctcaagtat
gtcttaaaatataacaagtctctcagtgacaccctcccccatcatttcca
tgccccaccccacttccagttctggccactgcctgttaggctgtgctttc
tcactgctgtggtgctgcttcatattcctagtgccagggcacagactggt
tccttgggtctcctatgttcatgtcctcttcagagggcaccactcccatt
cctgtgagcagctgcggtctccactgtaccacaggtgtctctttcaagac
gtcaagccaacgctgttctcctgatctttgatgtggtaagactgcagctg
ttcacccaacacagcccacaacctgtctgcttcacacagacaataaaata
ccagcattgacaagcaacttgtgatttagtttatctaacctaagagctgt
gcctatgccagagacacaacacctggggagactttcaggtttatgggaag
ttaccacaggctgttgacaatttctttaaaggaagatggaatgaaccatt
gtcctgttgcaagatttcccattcttgaccttcagcatcaccaagaccac
tcaagcaaattttgcagtcaaattcgggtttcattcaaattctgaaaccc
tctaatgtcactgctaacttgctcaatgcactcaattgccagcttctgtg
c
gaattcctctcctctgggttcacaagaagagaatgtgggaatggaatgtg
ggaggagatatctctccccatgatcatgtggaatggcatgtcagcctctg
atcaagctctcccttgatgtcctcctgacttcagctgaagggtcttcttg
ctgttctcatctgaagtgtcctctcccctctccctccataactgtgctta
gtcaccactaaatgcctgtctgggaaatgcctgtctttctctaggtcagt
aatgactgtcttagtcggggtttctatttctgaacaaacatcatgaccaa
gaagcaagttggggaagaaagggtttattcggtttacatttccatactgc
tgttcatcaccaaggaagtcaggactggaactcaagcaggtcaggaagca
ggagctgatgcagaggccatggagggatgtttctttactggcttgcttcc
cctggcttgctcagcctgctctcttatagaatcgagactaccagcccaga
gatggtcccacccacaaggggtctttcccccttgatcactaattgagaaa
atgccttacagttggatctcatggaggcatttcctcaactgaagctcctt
tttctgtgataactccagctgtgtcaagttgacacaaaactagccagtac
aattgatcccttgtccacttgacacacaaatacatcactagtaagcctca
acccttacattcttattcatccccaagatctaaataactttaaaagtccc
acagttttttacatattcttaaaatttcaatctctttaaaatatccaact
cttttaaaaccccaaagtctttttacaattaaaagtctcttaactgttga
ttccactaaaatagtttcttccttcagagggaaaatatcaggcacagtca
caagcaaaagcaaaattaatctcactatccatgtctgggatccaactcat
gatcctccctgggctcctccaagggttggggtcacttctccagccatgcc
ctttgtagcacacatgtcgtctctaagcttcagatgcctgtactccactg
ctgcttgctctgttgtcatctcatggtacttgccatccacgaacactggc
tgaccttcagtcctacatcattggcacttgaggctgaacctcatcaatgg
tctctccttggctctctacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38178725_38179668
seq2: B6Ng01-189H02.b_43_993

seq1  GAATTCCAGCACTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  50

seq1  CAGCTTGATCTACAGAGTGAGTTCCAGGACAGCCAGAGTTATACAGAGAA  100
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  CAGCTTGATCTACAGAGTGAGTTCCAGGA-AG-CAGAGTTATACAGAGAA  98

seq1  ACCCTGTCTTGAAACAAAACAAAACAAAACAACCAATAAAATAAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTTGAAACAAAACAAAACAAAACAACCAATAAAATAAAATTAA  148

seq1  AAATCTGCATTGAATATTAGAAATACAGATTCCTGTGCATGTCGGGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCATTGAATATTAGAAATACAGATTCCTGTGCATGTCGGGGGAT  198

seq1  TTGTGCATGTGCCCCCTGTCTTAGCCTCTTAACACATCTCCATAAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGTGCCCCCTGTCTTAGCCTCTTAACACATCTCCATAAGTCTG  248

seq1  TCTTCATAGTGCTCCATATTCTGTTCCTGAAGCCAGAGGGAATCTCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAGTGCTCCATATTCTGTTCCTGAAGCCAGAGGGAATCTCAAGT  298

seq1  ATGTCTTAAAATATAACAAGTCTCTCAGTGACACCCTCCCCCATCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAAAATATAACAAGTCTCTCAGTGACACCCTCCCCCATCATTTC  348

seq1  CATGCCCCACCCCACTTCCAGTTCTGGCCACTGCCTGTTAGGCTGTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCCACCCCACTTCCAGTTCTGGCCACTGCCTGTTAGGCTGTGCTT  398

seq1  TCTCACTGCTGTGGGGCTGCTTCATATTCCTAGTGCCAGGGCACAGACTG  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCACTGCTGTGGTGCTGCTTCATATTCCTAGTGCCAGGGCACAGACTG  448

seq1  GTTCCTTGGGTCTCCTATGTTCATGTCCTCTTCAGAGGGCACCACTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGGTCTCCTATGTTCATGTCCTCTTCAGAGGGCACCACTCCCA  498

seq1  TTCCTGTGAGCAGCTGCGGTCTCCACTGTACCACAGGTGTCTCTTTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGAGCAGCTGCGGTCTCCACTGTACCACAGGTGTCTCTTTCAAG  548

seq1  ACGTCAAGCCAACGCTGTTCTCCTGATCTTTGATGTGGTAAGACTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAAGCCAACGCTGTTCTCCTGATCTTTGATGTGGTAAGACTGCAGC  598

seq1  TGTTCACCCAACACAGCCCACAACCTGTCTGCTTCACACAGACAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCCAACACAGCCCACAACCTGTCTGCTTCACACAGACAATAAAA  648

seq1  TACCAGCATTGACAAGCAACTTGTGATTTAGTTTATCTAACCTAAGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCATTGACAAGCAACTTGTGATTTAGTTTATCTAACCTAAGAGCT  698

seq1  GTGCCTATGCCAGAGACAC-ACACCT-GGGAGACCTTCAGGTTAAT-GGA  747
      ||||||||||||||||||| |||||| ||||||| |||||||| || |||
seq2  GTGCCTATGCCAGAGACACAACACCTGGGGAGACTTTCAGGTTTATGGGA  748

seq1  AGTTA-CACAGGCTGTTGAC-ATTTCTTTAAGGGGAAGATGGAATGAACC  795
      ||||| |||||||||||||| ||||||||||  |||||||||||||||||
seq2  AGTTACCACAGGCTGTTGACAATTTCTTTAA-AGGAAGATGGAATGAACC  797

seq1  A-TGTCCTGTTGCAAGATTTCCCA-TCTTGA-CTCCAGCATCA-CAAGA-  840
      | |||||||||||||||||||||| |||||| || |||||||| ||||| 
seq2  ATTGTCCTGTTGCAAGATTTCCCATTCTTGACCTTCAGCATCACCAAGAC  847

seq1  CACTCAAGCAAATTTTGCAGTCAAATCACGTTTTCATTC-AATTCTGAAC  889
      ||||||||||||||||||||||||||   | |||||||| ||||||||| 
seq2  CACTCAAGCAAATTTTGCAGTCAAATTCGGGTTTCATTCAAATTCTGAA-  896

seq1  ACTCTTAAGTGCCACTGTCAAC-TGCTCAAATGCCACCCATTTG-CAGCT  937
      || ||  | || |||||  ||| ||||| |||| ||| || ||| |||||
seq2  ACCCTCTAATGTCACTGCTAACTTGCTC-AATG-CACTCAATTGCCAGCT  944

seq1  TCTGTGC  944
      |||||||
seq2  TCTGTGC  951