BAC Information

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BAC

Clone NameB6Ng01-189H15
Chromosome3 (Build37)
Map Location 100,768,208 - 100,896,945
singlet/doubletdoublet
Overlap geneTtf2, Igsf2, Ptgfrn
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H15.bB6Ng01-189H15.g
ACCGA013489GA013490
length1,143751
definitionB6Ng01-189H15.b B6Ng01-189H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,768,208 - 100,769,340)(100,896,195 - 100,896,945)
sequence
ttcaggcctgcaattttgttgtgcactgcatgatattatgggtaatggga
acagaatcccaaggcttattcaagagcaccaagtgctcttaaccactaag
catcaatctaaactcgtaatgagagaaagagagagagagagagagagaga
gaaggagggggcaggcctcaccacagccctagctggtcacccctggtttt
tacgtggtgctgaagatctgaattcaggtcttcatgcttgcacagctagc
agcgtatctaagccatcactccagcccctgcagaggacatttttagggct
ggaagtcaagaatcaaaatgatatgatacccgaaaggatgccctggttta
ctctttttttttccctgtatgaaggacaaaggagagagaccagcaatggc
tgccaaacagaaaaaggataaccagatattgtgtgcgccagaagaggggc
cacaatactgtctgaaaaaggaagtagctaaacatacaagaaatactagc
aaactccaaatggtatcacacagctaactgttcacaacctagggtctttc
tggagccccaccatcgctgtcgcagatgagagatggagcaaggtacaccc
tggacgtaccgccaggcgatggcatgccgtcccagctctctcagcctaac
tgcactcagcctcaccacctcaattcaagctgtcactcagagaaagcagc
tgtgttcagtggctggagctgggtttgaatcccagcaaccacttggaact
cagattcccttcccaacctctcgaagagcagacttacacccacctgtaaa
ccagctactgagaccaactactgcagtcgggcatggaaggcacaggataa
caagggtgccatgcggctcagtctttggcagctattatctcaaagcactt
ttcctcagttctccacttttgaacctccatggttcttttaatgcaaatta
gaaagcccactggttgctatctaccacctataggagggttggggtttctg
tatcaagagacaagtgatcttagttgtcaggggaacaggactgaaactat
aaagattggccaagcctggactcttacttaccagaaaaatcaatcactcc
tccatcaatcatccaatcatcagtttcgctctccccccccccc
gaattcactactaagatttgcaagtttgcttgtgtgtgtgtgttcatctc
cagctcacatgaggacagggggatctttctaggactccgaaggcacctga
tctcctgtacgggcctggccggttcagtgtcttggataactgaagcatca
ccaagtctttatttcagggctctgctttgcctataccgctgtcaacatag
cagctgatacatatcttacaaatggctccaatctgaaagccagatgataa
aaatttgggcaataataggaacagattgcaagaatgctttgtaggtaggc
cacactctgcaggtcttgatttagaataatgttcatgataacctgagaaa
taaaattatttcccgtggctatcagggggaggtggaaaatgatcaataaa
taaagtttggtctttattgtctcgtttctcttaatgattccagcagttgc
aggtagaacttactgcggagcacattgcttgtggagtcatttaccttgaa
agccttgcctgcctggcgtttcctgcctttcctcagctactccaaataga
ggcagggatcctgaaggcatctgattacattcttgcatattctaaagagg
ggagatggtaatctggagtcagctctccattgttaaccatctgcccatga
cattacctttcgtgcttgtgggtgcactggcgtgcgtgtgcgtgtgcgtg
tgcgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100768208_100769340
seq2: B6Ng01-189H15.b_52_1194

seq1  TTCAGGCCTGCAATTTTGTTGTGCACTGCATGATATTATGGGTAATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCTGCAATTTTGTTGTGCACTGCATGATATTATGGGTAATGGGA  50

seq1  ACAGAATCCCAAGGCTTATTCAAGAGCACCAAGTGCTCTTAACCACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCCCAAGGCTTATTCAAGAGCACCAAGTGCTCTTAACCACTAAG  100

seq1  CATCAATCTAAACTCGTAATGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCTAAACTCGTAATGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAAGGAGGGGGCAGGCCTCACCACAGCCCTAGCTGGTCACCCCTGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGGGCAGGCCTCACCACAGCCCTAGCTGGTCACCCCTGGTTTT  200

seq1  TACGTGGTGCTGAAGATCTGAATTCAGGTCTTCATGCTTGCACAGCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGTGCTGAAGATCTGAATTCAGGTCTTCATGCTTGCACAGCTAGC  250

seq1  AGCGTATCTAAGCCATCACTCCAGCCCCTGCAGAGGACATTTTTAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTATCTAAGCCATCACTCCAGCCCCTGCAGAGGACATTTTTAGGGCT  300

seq1  GGAAGTCAAGAATCAAAATGATATGATACCCGAAAGGATGCCCTGGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAAGAATCAAAATGATATGATACCCGAAAGGATGCCCTGGTTTA  350

seq1  CTCTTTTTTTTTCCCTGTATGAAGGACAAAGGAGAGAGACCAGCAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTTTCCCTGTATGAAGGACAAAGGAGAGAGACCAGCAATGGC  400

seq1  TGCCAAACAGAAAAAGGATAACCAGATATTGTGTGCGCCAGAAGAGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAACAGAAAAAGGATAACCAGATATTGTGTGCGCCAGAAGAGGGGC  450

seq1  CACAATACTGTCTGAAAAAGGAAGTAGCTAAACATACAAGAAATACTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACTGTCTGAAAAAGGAAGTAGCTAAACATACAAGAAATACTAGC  500

seq1  AAACTCCAAATGGTATCACACAGCTAACTGTTCACAACCTAGGGTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAATGGTATCACACAGCTAACTGTTCACAACCTAGGGTCTTTC  550

seq1  TGGAGCCCCACCATCGCTGTCGCAGATGAGAGATGGAGCAAGGTACACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCCACCATCGCTGTCGCAGATGAGAGATGGAGCAAGGTACACCC  600

seq1  TGGACGTACCGCCAGGCGATGGCATGCCGTCCCAGCTCTCTCAGCCTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGTACCGCCAGGCGATGGCATGCCGTCCCAGCTCTCTCAGCCTAAC  650

seq1  TGCACTCAGCCTCACCACCTCAATTCAAGCTGTCACTCAGAGAAAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCAGCCTCACCACCTCAATTCAAGCTGTCACTCAGAGAAAGCAGC  700

seq1  TGTGTTCAGTGGCTGGAGCTGGGTTTGAATCCCAGCAACCAC-TGGAACT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTTCAGTGGCTGGAGCTGGGTTTGAATCCCAGCAACCACTTGGAACT  750

seq1  CAGATTCCCTTCCCAACCTCTCGAAGAGCAGACTTACACCCACCTGTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCTTCCCAACCTCTCGAAGAGCAGACTTACACCCACCTGTAAA  800

seq1  CCAGCTACTGAGACCAACTACTGCAGTCGGGCATGGAAGGCACAGGATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACTGAGACCAACTACTGCAGTCGGGCATGGAAGGCACAGGATAA  850

seq1  CAA-GGTGCCATGCGGCTCAGTTCTTTGGCAGCTATTATCTCAAAGCACT  898
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAGGGTGCCATGCGGCTCAG-TCTTTGGCAGCTATTATCTCAAAGCACT  899

seq1  TTTCCTCAG-TCTCCACTTTTGAACCTCCATGGTTCTTTTAATGCAAATT  947
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAGTTCTCCACTTTTGAACCTCCATGGTTCTTTTAATGCAAATT  949

seq1  AGAAAG-CCACTGGTTGCTATCTACCACCTATAG--AGGTTGGTGTTTCT  994
      |||||| |||||||||||||||||||||||||||   |||||| ||||||
seq2  AGAAAGCCCACTGGTTGCTATCTACCACCTATAGGAGGGTTGGGGTTTCT  999

seq1  GTATCAAGAGACAAGTGATCTTAAGTGTCAGGGGAACAGGACTGAACCTA  1044
      |||||||||||||||||||||||  ||||||||||||||||||||| || 
seq2  GTATCAAGAGACAAGTGATCTTAGTTGTCAGGGGAACAGGACTGAAACT-  1048

seq1  ATAAAGATTTGCC-AGCCT-GACTC-TAC-TAACAGAAAA--CAATCACT  1088
      ||||||||| ||| ||||| ||||| ||| || |||||||  ||||||||
seq2  ATAAAGATTGGCCAAGCCTGGACTCTTACTTACCAGAAAAATCAATCACT  1098

seq1  CTCCCAATCAATCAATCAATCAATCAATTT--CTCTCCCCCCCCCCC  1133
      | | | ||||||||  ||||| |||| |||  |||||||||||||||
seq2  C-CTCCATCAATCATCCAATC-ATCAGTTTCGCTCTCCCCCCCCCCC  1143

seq1: chr3_100896195_100896945
seq2: B6Ng01-189H15.g_66_816 (reverse)

seq1  ACACACACACACACACACACACACACGCACACGCACACGCACACGCACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACGCACACGCACACGCACACGCACGC  50

seq1  ACACGCACACGCACACGCACGCCAGTGCACCCACAAGCACGAAAGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACACGCACACGCACGCCAGTGCACCCACAAGCACGAAAGGTAAT  100

seq1  GTCATGGGCAGATGGTTAACAATGGAGAGCTGACTCCAGATTACCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGCAGATGGTTAACAATGGAGAGCTGACTCCAGATTACCATCTC  150

seq1  CCCTCTTTAGAATATGCAAGAATGTAATCAGATGCCTTCAGGATCCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTAGAATATGCAAGAATGTAATCAGATGCCTTCAGGATCCCTGC  200

seq1  CTCTATTTGGAGTAGCTGAGGAAAGGCAGGAAACGCCAGGCAGGCAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTGGAGTAGCTGAGGAAAGGCAGGAAACGCCAGGCAGGCAAGGC  250

seq1  TTTCAAGGTAAATGACTCCACAAGCAATGTGCTCCGCAGTAAGTTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTAAATGACTCCACAAGCAATGTGCTCCGCAGTAAGTTCTACC  300

seq1  TGCAACTGCTGGAATCATTAAGAGAAACGAGACAATAAAGACCAAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGCTGGAATCATTAAGAGAAACGAGACAATAAAGACCAAACTTT  350

seq1  ATTTATTGATCATTTTCCACCTCCCCCTGATAGCCACGGGAAATAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGATCATTTTCCACCTCCCCCTGATAGCCACGGGAAATAATTTT  400

seq1  ATTTCTCAGGTTATCATGAACATTATTCTAAATCAAGACCTGCAGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGGTTATCATGAACATTATTCTAAATCAAGACCTGCAGAGTGT  450

seq1  GGCCTACCTACAAAGCATTCTTGCAATCTGTTCCTATTATTGCCCAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACCTACAAAGCATTCTTGCAATCTGTTCCTATTATTGCCCAAATT  500

seq1  TTTATCATCTGGCTTTCAGATTGGAGCCATTTGTAAGATATGTATCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATCTGGCTTTCAGATTGGAGCCATTTGTAAGATATGTATCAGCT  550

seq1  GCTATGTTGACAGCGGTATAGGCAAAGCAGAGCCCTGAAATAAAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTGACAGCGGTATAGGCAAAGCAGAGCCCTGAAATAAAGACTTG  600

seq1  GTGATGCTTCAGTTATCCAAGACACTGAACCGGCCAGGCCCGTACAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTTCAGTTATCCAAGACACTGAACCGGCCAGGCCCGTACAGGAG  650

seq1  ATCAGGTGCCTTCGGAGTCCTAGAAAGATCCCCCTGTCCTCATGTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGCCTTCGGAGTCCTAGAAAGATCCCCCTGTCCTCATGTGAGCT  700

seq1  GGAGATGAACACACACACACAAGCAAACTTGCAAATCTTAGTAGTGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAACACACACACACAAGCAAACTTGCAAATCTTAGTAGTGAATT  750

seq1  C  751
      |
seq2  C  751