BAC Information

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BAC

Clone NameB6Ng01-189I16
Chromosome3 (Build37)
Map Location 45,848,142 - 45,849,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189I16.bB6Ng01-189I16.g
ACCGA013539GA013540
length1,1511,195
definitionB6Ng01-189I16.b B6Ng01-189I16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatctgtgagacaggactcttctgcataccaagcagagtgctac
atcaggcagtgctaatgagtcatcttctctgttgcaatgggcttttccat
gatatagtagcctttgagatgtccatgctccttttacttactccttcctc
tctttggggcataagtatacatcctcatgactccaagaaaagcaacataa
tgctacattttaattgcttccctttttgtctcttttatttattgttttct
aatgtattatatcccaattgcaatatgtcttccctccacttctcccaccc
ttgttacctgcccccacccccctagatgcactccttatccttttcccttc
agaaggctcaggctatccagggatatcaatccaacatggtataacaagtt
gaaataaggcaagtcacaccccctcatatgagggtggtagagtcaaatca
gtaggagaaaaagaagtccccaaagcaggcaaaaatctcagagcatcctt
catttccactgtcaggagtccttcaataacatcaagttatacaatcatag
taggtcagacaacgggcttacaagtgctcacagagttggaactgataatc
atggagcctgtggcagttagttggttctgtgaatcatgttcttaaactat
actcaacccctctgattcctaccacccttccccctgttctaccacaggat
ttccaaggctctgcctattgttggctctgaacctctgtatctgctcccac
taaacactcgatgaagcatctctggtgacaattatgacaggcttcagtct
atgagaacagaagattatgataaggaataatcttattgatttgttatttc
cagtcaacattggttctttcctaggtatctgagctacccagacttggtac
ttagccctccaggcagtgtcaggcttgggctacctctcatggcttgtgtc
tcaatttgaccaatcattattacaccacttgtacatgttctgtgccacca
ttaccccagacatcttcctgatggtcaaataagtaggtcatcttagaaat
gagatataaacactatttaattattgtgacttgcaatgtacaagacaaaa
tggtaagctcaatgaataaacatgtcatctagaactgaagaatatccaac
a
gaattccactttgggcctgtcactggacttccttctcctcaggaacatct
ccatttttgtccctgcatttctttcagacaggaacaattatgggtcagag
tttttgactgtgggatggcatacttgatgccctgtctttctgcagaagga
agactatacaagttacctatccttactgtagggtctgtcatctaagttcc
ttccctttgagtcctgagagactctcacttcccttgtctgtggtacactg
tggagggtatccccacttcctacctcctgagattacctgtttccattctt
tctgctggccctcagggcttcagtccttttcccctatccaatacctgacc
atgttcccctcttaccctccctgtccccttttccactcaggtccctctct
tgtttctccctctcataattgctctcttctccttccaatgtgggattgag
gcatcctgacttcttccagcagtcctgagtttcattcatagcaaccacat
ggtggtacacgatcatctgtaacaggatgtcttcttctgaaatgacaact
tttatttatttatttatttatttatttatttatttatttgatattttctt
attttatttacatttcaaatgttatccccttccccagtttccctccctcc
tggaaacacccaatcacatcctccatccctgcttctatgagggtgttcct
ccacccacccacccactaccacctccctgccctcgattcgattctcctat
actggggcatctatctagccttaataggaccaaggacctctccttccatt
gatgcatgacaaggttatcctctgatccatatgcagctggagccatgtgt
actcttttgttgatgacttagtccctgggagttctgctgggggtctggtt
gattgatattgttgttcctcctatgggattgcaaacccctttcaactcct
tcaatcccttttctctaactcctctattagggaccctggctcagtccaat
gggtggctgctacatctgctctgtatttgtgagctctggcagagcctctc
agagacaggctattattcaacttctttcagccctgcagtttttggccatc
cacaacaagtgtctgagttgtaactgttattggacgtgatgatcccttag
cgtggtacaagatcctctttataagctaaaacatttatacgcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45848142_45849304
seq2: B6Ng01-189I16.b_47_1197 (reverse)

seq1  TGTTTGATA-TCTTCATTTCTAAGATGACATGTTTTATTCATTGAGCTTT  49
      |||| |||| |||||| |||| |||||||||| ||||||||||||||  |
seq2  TGTTGGATATTCTTCAGTTCT-AGATGACATG-TTTATTCATTGAGC--T  46

seq1  TACATTTTTGTCTTTTGTTACATTTTGCAAGTCACAATTATTAAATAGTG  99
      |||  |||||||||    ||||  |||||||||||||| |||||||||||
seq2  TACCATTTTGTCTT---GTACA--TTGCAAGTCACAATAATTAAATAGTG  91

seq1  TTTATTATCTTCATTTCTAAGATGACCTAC-TATTTGACCCATCAGGAAG  148
      |||| |||| |||||||||||||||||||| ||||||| |||||||||||
seq2  TTTA-TATC-TCATTTCTAAGATGACCTACTTATTTGA-CCATCAGGAAG  138

seq1  ATGTTCTGGGGTAATGGTGGCACAGAACATGTACAAGTGGTGTAATAATG  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-TCTGGGGTAATGGTGGCACAGAACATGTACAAGTGGTGTAATAATG  187

seq1  ATTGGTCAAATTTGAGACACAAGCCATGAGAGGTAGCCCAAGCCTGACAC  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCAAA-TTGAGACACAAGCCATGAGAGGTAGCCCAAGCCTGACAC  236

seq1  TGCCTGGAGGGCTAAGTACCAAGTCTGGGTAGCTCAGATACCTAGGAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAGGGCTAAGTACCAAGTCTGGGTAGCTCAGATACCTAGGAAAG  286

seq1  AACCAATGTTGACTGGAAATAACAAATCAATAAGATTATTCCTTATCATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGTTGACTGGAAATAACAAATCAATAAGATTATTCCTTATCATA  336

seq1  ATCTTCTGTTCTCATAGACTGAAGCCTGTCATAATTGTCACCAGAGATGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTTCTCATAGACTGAAGCCTGTCATAATTGTCACCAGAGATGC  386

seq1  TTCATCGAGTGTTTAGTGGGAGCAGATACAGAGGTTCAGAGCCAACAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGAGTGTTTAGTGGGAGCAGATACAGAGGTTCAGAGCCAACAATA  436

seq1  GGCAGAGCCTTGGAAATCCTGTGGTAGAACAGGGGGAAGGGTGGTAGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCCTTGGAAATCCTGTGGTAGAACAGGGGGAAGGGTGGTAGGAA  486

seq1  TCAGAGGGGTTGAGTATAGTTTAAGAACATGATTCACAGAACCAACTAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGGTTGAGTATAGTTTAAGAACATGATTCACAGAACCAACTAAC  536

seq1  TGCCACAGGCTCCATGATTATCAGTTCCAACTCTGTGAGCACTTGTAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGGCTCCATGATTATCAGTTCCAACTCTGTGAGCACTTGTAAGC  586

seq1  CCGTTGTCTGACCTACTATGATTGTATAACTTGATGTTATTGAAGGACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTCTGACCTACTATGATTGTATAACTTGATGTTATTGAAGGACTC  636

seq1  CTGACAGTGGAAATGAAGGATGCTCTGAGATTTTTGCCTGCTTTGGGGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTGGAAATGAAGGATGCTCTGAGATTTTTGCCTGCTTTGGGGAC  686

seq1  TTCTTTTTCTCCTACTGATTTGACTCTACCACCCTCATATGAGGGGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTCCTACTGATTTGACTCTACCACCCTCATATGAGGGGGTGT  736

seq1  GACTTGCCTTATTTCAACTTGTTATACCATGTTGGATTGATATCCCTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCTTATTTCAACTTGTTATACCATGTTGGATTGATATCCCTGGA  786

seq1  TAGCCTGAGCCTTCTGAAGGGAAAAGGATAAGGAGTGCATCTAGGGGGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAGCCTTCTGAAGGGAAAAGGATAAGGAGTGCATCTAGGGGGGT  836

seq1  GGGGGCAGGTAACAAGGGTGGGAGAAGTGGAGGGAAGACATATTGCAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAGGTAACAAGGGTGGGAGAAGTGGAGGGAAGACATATTGCAATT  886

seq1  GGGATATAATACATTAGAAAACAATAAATAAAAGAGACAAAAAGGGAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAATACATTAGAAAACAATAAATAAAAGAGACAAAAAGGGAAGC  936

seq1  AATTAAAATGTAGCATTATGTTGCTTTTCTTGGAGTCATGAGGATGTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATGTAGCATTATGTTGCTTTTCTTGGAGTCATGAGGATGTATA  986

seq1  CTTATGCCCCAAAGAGAGGAAGGAGTAAGTAAAAGGAGCATGGACATCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCCCCAAAGAGAGGAAGGAGTAAGTAAAAGGAGCATGGACATCTC  1036

seq1  AAAGGCTACTATATCATGGAAAAGCCCATTGCAACAGAGAAGATGACTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTACTATATCATGGAAAAGCCCATTGCAACAGAGAAGATGACTCA  1086

seq1  TTAGCACTGCCTGATGTAGCACTCTGCTTGGTATGCAGAAGAGTCCTGTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGCCTGATGTAGCACTCTGCTTGGTATGCAGAAGAGTCCTGTC  1136

seq1  TCACAGATGGAATTC  1163
      |||||||||||||||
seq2  TCACAGATGGAATTC  1151