BAC Information

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BAC

Clone NameB6Ng01-189J02
Chromosome3 (Build37)
Map Location 13,538,161 - 13,558,074
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneLOC100039798, EG668033, LOC668037, LOC100039823, LOC100039861
Downstream geneLOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189J02.bB6Ng01-189J02.g
ACCGA013557GA013558
length9981,088
definitionB6Ng01-189J02.b B6Ng01-189J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,538,161 - 13,539,151)(13,556,975 - 13,558,074)
sequence
gaattctctgagcaaactctcctggctctccattttcactgtgacgctgc
agcaggggaaacactcctccttttattcccatctcttcttatctattctg
atacagttggtattccaggctgagaatcaatcaacttcaagtttggctag
aaatctttgcataagtcatgctcatatttatatgctttcaaaatgagact
atagagaagcagcagtttcattttatggaaagttttacattttccttttg
agttatagaatataaagaagatataatcaacaaaatcagcttcagggact
gcatcttttaaaattagcttgatacaatatgagcataaattatctagctt
gattatcaaaaaggaaagaaaaaatgtcattttgcattcatgtttccact
tttatattttagctcacttcatagtcattgggggattgtatttttaaacc
aaagtgtttttccattgtgtttaaaaaaaaaagataaagttataaaaagc
tatgctgacaacactgaagcaggtcaacatacaagtagcattaaaatata
tattctttttcctcttttaatttttaattctacttcagtagacatctcca
tttttcacttctcttttttaaacattttatggatcctttgtgaattgcat
aagacaaaaacaaaacctacaaatttccttctggaacctatgttatgtta
caagtgtatccacagtatacccagttgtccatatattgttccttgaaaat
attaattgcaatgagtcattggtcttgtttgaggactctggctcctgcta
cactagtaatactggatcctcattggacataactgtatcctctgggatat
catgtttttgttctgtgtcatggacatcctgcagttatggaccaccaaga
gctgtcttctttcatgtgctctaacagttgggtaggtggagtagatgttg
ggtggactcacttgaattccattccttcttgggccttgggtagtagct

gaattctcggtggtgtaatcacttaggcctaaagctcaaaacaacaggat
ggagattttctttcttataaaacaaaaagaatgatttccttggcagcatc
acaaggatgctcattgctcttcccagtgagatcctgaagacctgctgtgg
agcaggttacacacacacaatcttgtacttaaggctctcctcttcctatc
tcagctgtgaccctgaatgcagatcagacagataggagtccctttgtctc
tcaagtcaatcgaagaaagaggcattttcctactgagactgtaatttgat
ttcactaggaattctcaatctctgttcaggaagaggaatgaaaaacaaag
ggtcaaacacccgttgccacaagccagccagatttgtctgacataacttt
gaagtctaggatgggtggatgtttcagattcccaccttcaaaaatagaaa
ggaaaacgatatggcggagatttttctgacaaaaaatcatcgcaccggcc
ttactctcttaaaaatctgaagtttcctcttcattgttatttgacgaata
ggagtacaatctaggtgaagcatttcctaatttgggaggcactaaaacaa
tgagaagcagggtttgaaaaggggaacggtgccatgccagagaggagtct
gtacattgaagttgagaggacagagaggcaaaaccacgctggcaaaaatc
caggaggtataattaagggctctgagtgagccaagttggctagagaagaa
gattcctgtgaaatataatgggatatgaagcatagtaaatggaagttgaa
acaaggtagcagagtaccttgaaagcttcaccacaaaaaaaagactataa
tgtcagagaaccatttaacgtttttgactcagaagcaacaagattaaaaa
aaaaaaaaaaaagaaagaaagacagaagaaagaaggacaagaaagagaaa
agaagaaaagagcctaaaagataatttccaagttgagcgcagacagaggg
aagaaggcagagccaatcggatactgagttcgagggctagcctgtctaca
aaggtggagtcccaaagaatactagggtttaatacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13538161_13539151
seq2: B6Ng01-189J02.b_48_1045

seq1  GAATTCTCTGAGCAAACTCTCCTGGCTCTCCATTTTCACTGTGACGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGCAAACTCTCCTGGCTCTCCATTTTCACTGTGACGCTGC  50

seq1  AGCAGGGGAAACACTCCTCCTTTTATTCCCATCTCTTCTTATCTATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGAAACACTCCTCCTTTTATTCCCATCTCTTCTTATCTATTCTG  100

seq1  ATACAGTTGGTATTCCAGGCTGAGAATCAATCAACTTCAAGTTTGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTGGTATTCCAGGCTGAGAATCAATCAACTTCAAGTTTGGCTAG  150

seq1  AAATCTTTGCATAAGTCATGCTCATATTTATATGCTTTCAAAATGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGCATAAGTCATGCTCATATTTATATGCTTTCAAAATGAGACT  200

seq1  ATAGAGAAGCAGCAGTTTCATTTTATGGAAAGTTTTACATTTTCCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGCAGCAGTTTCATTTTATGGAAAGTTTTACATTTTCCTTTTG  250

seq1  AGTTATAGAATATAAAGAAGATATAATCAACAAAATCAGCTTCAGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGAATATAAAGAAGATATAATCAACAAAATCAGCTTCAGGGACT  300

seq1  GCATCTTTTAAAATTAGCTTGATACAATATGAGCATAAATTATCTAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTTAAAATTAGCTTGATACAATATGAGCATAAATTATCTAGCTT  350

seq1  GATTATCAAAAAGGAAAGAAAAAATGTCATTTTGCATTCATGTTTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCAAAAAGGAAAGAAAAAATGTCATTTTGCATTCATGTTTCCACT  400

seq1  TTTATATTTTAGCTCACTTCATAGTCATTGGGGGATTGTATTTTTAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTAGCTCACTTCATAGTCATTGGGGGATTGTATTTTTAAACC  450

seq1  AAAGTGTTTTTCCATTGTGTTTAAAAAAAAAAGATAAAGTTATAAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTTTCCATTGTGTTTAAAAAAAAAAGATAAAGTTATAAAAAGC  500

seq1  TATGCTGACAACACTGAAGCAGGTCAACATACAAGTAGCATTAAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGACAACACTGAAGCAGGTCAACATACAAGTAGCATTAAAATATA  550

seq1  TATTCTTTTTCCTCTTTTAATTTTTAATTCTACTTCAGTAGACATCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTCCTCTTTTAATTTTTAATTCTACTTCAGTAGACATCTCCA  600

seq1  TTTTTCACTTCTCTTTTTTAAACATTTTATGGATCCTTTGTGAATTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTTCTCTTTTTTAAACATTTTATGGATCCTTTGTGAATTGCAT  650

seq1  AAGACAAAAACAAAACCTACAAATTTCCTTCTGGAACCTATGTTATGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAAACAAAACCTACAAATTTCCTTCTGGAACCTATGTTATGTTA  700

seq1  CAAGTGTATCCACAGTATACCCAGTTGTCCATATATTGTTCCTTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTATCCACAGTATACCCAGTTGTCCATATATTGTTCCTTGAAAAT  750

seq1  ATTAATTGCAATGAGTCATTGGTCTTGTTTGAGGACTCTGGCTCCTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGCAATGAGTCATTGGTCTTGTTTGAGGACTCTGGCTCCTGCTA  800

seq1  CACTAGTAATACTGGATCCTCATTGGACATAACTGTATCCTCTGGGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTAATACTGGATCCTCATTGGACATAACTGTATCCTCTGGGATAT  850

seq1  CATGTTTTTGTTCTGTGTCATGGACATCCTGCAGTTATGGACCACCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTGTTCTGTGTCATGGACATCCTGCAGTTATGGACCACCAAGA  900

seq1  GCTGTCT--CTTCATGTGCTCTAACAGTT-GGTAGGTGGAGTAGATGTTG  947
      |||||||   ||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGTCTTCTTTCATGTGCTCTAACAGTTGGGTAGGTGGAGTAGATGTTG  950

seq1  GGTGGACCCACTTGAA-TCCATT-CTTCT--GGGCTTGGGTAGTAGCT  991
      ||||||| |||||||| |||||| |||||  || ||||||||||||||
seq2  GGTGGACTCACTTGAATTCCATTCCTTCTTGGGCCTTGGGTAGTAGCT  998


seq1: chr3_13556975_13558074
seq2: B6Ng01-189J02.g_67_1154 (reverse)

seq1  TCTGTAT--AACCCTAGGTATC-TTGGGACTC--ACTTTGTAGACCAGGC  45
      |||||||  ||||||||   || |||||||||   ||||||||| |||||
seq2  TCTGTATTAAACCCTAGTATTCTTTGGGACTCCACCTTTGTAGA-CAGGC  49

seq1  T-GGCCTCGAACTCAGTAATCCGATTGCCTCTGCCTTCTCCTCT-TGTCT  93
      | | ||||||||||||| ||||||||| ||||||||||| | || |||||
seq2  TAGCCCTCGAACTCAGT-ATCCGATTGGCTCTGCCTTCTTCCCTCTGTCT  98

seq1  GCGCTCAACTTGGAAATTATCTTTTAAGGCTTCTTTTTCTTTTCTTTTTT  143
      ||||||||||||||||||||||||| ||||       ||||||||| |||
seq2  GCGCTCAACTTGGAAATTATCTTTT-AGGC-------TCTTTTCTTCTTT  140

seq1  CTCTTTTTCTTTGTTCTTTCTTTCTTTCTTTGTTCTTTCTTTTCTTTTTT  193
       ||| |||||      | || |||||||||   |||||||||  ||||||
seq2  -TCTCTTTCT------TGTCCTTCTTTCTTCTGTCTTTCTTTCTTTTTTT  183

seq1  TTTTTTTTTTAATCTTGTTGCTTTCCTGAGTC-AAAACGTTAAATGGTTC  242
      |||||||||||||||||||||||  ||||||| |||||||||||||||||
seq2  TTTTTTTTTTAATCTTGTTGCTT--CTGAGTCAAAAACGTTAAATGGTTC  231

seq1  TCTGACATTTATAGTCTTTTTTTTGTGGTGAAGCTTTCAAGGTACTCTGC  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACA-TTATAGTCTTTTTTTTGTGGTGAAGCTTTCAAGGTACTCTGC  280

seq1  TACCTTGTTTCAACTTCCATTTACTATGCTTCATATCCCATTATATTTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTTTCAACTTCCATTTACTATGCTTCATATCCCATTATATTTCA  330

seq1  CAGGAATCTTCTTCTCTAGCCAACTTGGCTCACTCAGAGCCCTTAATTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCTTCTTCTCTAGCCAACTTGGCTCACTCAGAGCCCTTAATTAT  380

seq1  ACCTCCTGGATTTTTGCCAGCGTGGTTTTGCCTCTCTGTCCTCTCAACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGGATTTTTGCCAGCGTGGTTTTGCCTCTCTGTCCTCTCAACTT  430

seq1  CAATGTACAGACTCCTCTCTGGCATGGCACCGTTCCCCTTTTCAAACCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACAGACTCCTCTCTGGCATGGCACCGTTCCCCTTTTCAAACCCT  480

seq1  GCTTCTCATTGTTTTAGTGCCTCCCAAATTAGGAAATGCTTCACCTAGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCATTGTTTTAGTGCCTCCCAAATTAGGAAATGCTTCACCTAGAT  530

seq1  TGTACTCCTATTCGTCAAATAACAATGAAGAGGAAACTTCAGATTTTTAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCTATTCGTCAAATAACAATGAAGAGGAAACTTCAGATTTTTAA  580

seq1  GAGAGTAAGGCCGGTGCGATGATTTTTTGTCAGAAAAATCTCCGCCATAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAAGGCCGGTGCGATGATTTTTTGTCAGAAAAATCTCCGCCATAT  630

seq1  CGTTTTCCTTTCTATTTTTGAAGGTGGGAATCTGAAACATCCACCCATCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCCTTTCTATTTTTGAAGGTGGGAATCTGAAACATCCACCCATCC  680

seq1  TAGACTTCAAAGTTATGTCAGACAAATCTGGCTGGCTTGTGGCAACGGGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCAAAGTTATGTCAGACAAATCTGGCTGGCTTGTGGCAACGGGT  730

seq1  GTTTGACCCTTTGTTTTTCATTCCTCTTCCTGAACAGAGATTGAGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCCTTTGTTTTTCATTCCTCTTCCTGAACAGAGATTGAGAATTC  780

seq1  CTAGTGAAATCAAATTACAGTCTCAGTAGGAAAATGCCTCTTTCTTCGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAATCAAATTACAGTCTCAGTAGGAAAATGCCTCTTTCTTCGAT  830

seq1  TGACTTGAGAGACAAAGGGACTCCTATCTGTCTGATCTGCATTCAGGGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAGAGACAAAGGGACTCCTATCTGTCTGATCTGCATTCAGGGTC  880

seq1  ACAGCTGAGATAGGAAGAGGAGAGCCTTAAGTACAAGATTGTGTGTGTGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGAGATAGGAAGAGGAGAGCCTTAAGTACAAGATTGTGTGTGTGT  930

seq1  AACCTGCTCCACAGCAGGTCTTCAGGATCTCACTGGGAAGAGCAATGAGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTCCACAGCAGGTCTTCAGGATCTCACTGGGAAGAGCAATGAGC  980

seq1  ATCCTTGTGATGCTGCCAAGGAAATCATTCTTTTTGTTTTATAAGAAAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTGATGCTGCCAAGGAAATCATTCTTTTTGTTTTATAAGAAAGA  1030

seq1  AAATCTCCATCCTGTTGTTTTGAGCTTTAGGCCTAAGTGATTACACCACC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCATCCTGTTGTTTTGAGCTTTAGGCCTAAGTGATTACACCACC  1080

seq1  GAGAATTC  1100
      ||||||||
seq2  GAGAATTC  1088


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