BAC Information

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BAC

Clone NameB6Ng01-189J10
Chromosome3 (Build37)
Map Location 47,509,582 - 47,697,364
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189J10.bB6Ng01-189J10.g
ACCGA013572GA013573
length1,021530
definitionB6Ng01-189J10.b B6Ng01-189J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,696,355 - 47,697,364)(47,509,582 - 47,510,111)
sequence
gaattccatattaatatatagaaaatttgactcactcattagggtaaaga
attgtcacttttatagtcaccaataaacttcaaatgtactatttttgaaa
ggctttctttgcatatgaccaagaggcaacatagattattttctatagct
atcattatagttaagcaatatttgttgaggtttggtctgttgctatgtgt
tttaatgccaaatgcaggccaccatacctggtttccccagagaaattgca
tgtaggcctctagggatactatgtgagatgccaacagtcaatagctgggc
agaagagacacaggtggggtttcagtttcccaggttttggtaagaggaga
accaggaaaggaagaagattgacagaagagaaagcaaccatggggtaaga
atcttaaaaataatagccacgaggattggctaattgcagttaaagcagcc
cagaagaaacatgacaaattatataatgggattattggctgagaaatagg
catagtagccttagctaattaaggcttgttataaatataaagtttgtgtg
tgaaccaaatggtcaaaggtaggatagaactcccagatagggattacaaa
tttctataacacatattctatttccaaggtgaatgaaaaaatgttttgtt
aaattttatctcagtactatgtatgtatgggtacaacttaacaattttac
aaataaagtaaatgcacattgattcaatcaataatcaatggatctattaa
tattaatagtggatagcaaacatattcatttaacctacatatgatactta
atattaaaacttgtccaatcctaggaatcagacacagtttgttacttttt
cctgctgattgataattgattgaaaaaaaaatgtaagtagttgcagggta
ttccatcaagagactgttacataaaaaaaaaacttaaatattattaaaat
cctttattagaggagctggtgattaactgggtattttaggatctctgttg
tacctcccaagccctttgctt

gaattcagagctgccataaattaaacctgatgtgatagccagaagctgga
aagaacccagatacccctcaacagaggaatggatacagaaaatgtggtac
atttacacgatggagtactacttagctattaaaaagaatgaatttatgaa
attcctagccaaatggatggacctggagggcatcatcctgagtgaagtaa
cacaatcacaaaggaactcacacaatacgtactcactgataagtggatat
tagcccaaaacttaggatacccaagatataaggtacaatttggcaaatgc
atgaaactctagaagaatgaagaccaaagtgtggacactgtgccccttct
tagaattgggaacaaaacacacatggaaggagttacagagacaaattttg
gagctacgacaaaaggatggaccatctagagactgccatatccagggatc
caccccattatcagcttccaaatgctgacaccattgcatacactagtaag
aatttgctgaaaggacccagatatagctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47696355_47697364
seq2: B6Ng01-189J10.b_47_1066 (reverse)

seq1  AGCAA--GGCTT-GGAGTTAC-ACAGAGATCCT-AAATACCAAGTATAAT  45
      |||||  ||||| |||| ||| ||||||||||| ||||||| ||| ||||
seq2  AGCAAAGGGCTTGGGAGGTACAACAGAGATCCTAAAATACCCAGT-TAAT  49

seq1  CACCAGCT-CTCTAATAAA-GATTTT-ATAATAATTTAAG-TTTTTTTTT  91
      |||||||| |||||||||| |||||| ||||| ||||||| |||||||||
seq2  CACCAGCTCCTCTAATAAAGGATTTTAATAAT-ATTTAAGTTTTTTTTTT  98

seq1  ATGT-ACAGTCTTCTTTGATGG-ATACCCTGCAACTACTTACA-TTTTTT  138
      |||| |||||||   ||||||| |||||||||||||||||||| ||||||
seq2  ATGTAACAGTCT--CTTGATGGAATACCCTGCAACTACTTACATTTTTTT  146

seq1  TTCAATCAATTATCAATCAGCAGGAAAAAGT-ACAAACTGTGTCTGATTC  187
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCAATCAATTATCAATCAGCAGGAAAAAGTAACAAACTGTGTCTGATTC  196

seq1  CTAGGATTGGACAAGTTTTAATATTAAGTATCATATGTAGGTTAAATGAA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTGGACAAGTTTTAATATTAAGTATCATATGTAGGTTAAATGAA  246

seq1  TATGTTTGCTATCCACTATTAATATTAATAGATCCATTGATTATTGATTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGCTATCCACTATTAATATTAATAGATCCATTGATTATTGATTG  296

seq1  AATCAATGTGCATTTAC-TTATTTGTAAAATTGTTAAGTTGTACCCATAC  336
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCAATGTGCATTTACTTTATTTGTAAAATTGTTAAGTTGTACCCATAC  346

seq1  ATACATAGTACTGAGATAAAATTTAACAAAACATTTTTTCATTCACCTTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGTACTGAGATAAAATTTAACAAAACATTTTTTCATTCACCTTG  396

seq1  GAAATAGAATATGTGTTATAGAAATTTGTAATCCCTATCTGGGAGTTCTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAATATGTGTTATAGAAATTTGTAATCCCTATCTGGGAGTTCTA  446

seq1  TCCTACCTTTGACCATTTGGTTCACACACAAACTTTATATTTATAACAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTTTGACCATTTGGTTCACACACAAACTTTATATTTATAACAAG  496

seq1  CCTTAATTAGCTAAGGCTACTATGCCTATTTCTCAGCCAATAATCCCATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTAGCTAAGGCTACTATGCCTATTTCTCAGCCAATAATCCCATT  546

seq1  ATATAATTTGTCATGTTTCTTCTGGGCTGCTTTAACTGCAATTAGCCAAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTGTCATGTTTCTTCTGGGCTGCTTTAACTGCAATTAGCCAAT  596

seq1  CCTCGTGGCTATTATTTTTAAGATTCTTACCCCATGGTTGCTTTCTCTTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGGCTATTATTTTTAAGATTCTTACCCCATGGTTGCTTTCTCTTC  646

seq1  TGTCAATCTTCTTCCTTTCCTGGTTCTCCTCTTACCAAAACCTGGGAAAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCTTCTTCCTTTCCTGGTTCTCCTCTTACCAAAACCTGGGAAAC  696

seq1  TGAAACCCCACCTGTGTCTCTTCTGCCCAGCTATTGACTGTTGGCATCTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCCACCTGTGTCTCTTCTGCCCAGCTATTGACTGTTGGCATCTC  746

seq1  ACATAGTATCCCTAGAGGCCTACATGCAATTTCTCTGGGGAAACCAGGTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTATCCCTAGAGGCCTACATGCAATTTCTCTGGGGAAACCAGGTA  796

seq1  TGGTGGCCTGCATTTGGCATTAAAACACATAGCAACAGACCAAACCTCAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCTGCATTTGGCATTAAAACACATAGCAACAGACCAAACCTCAA  846

seq1  CAAATATTGCTTAACTATAATGATAGCTATAGAAAATAATCTATGTTGCC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGCTTAACTATAATGATAGCTATAGAAAATAATCTATGTTGCC  896

seq1  TCTTGGTCATATGCAAAGAAAGCCTTTCAAAAATAGTACATTTGAAGTTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCATATGCAAAGAAAGCCTTTCAAAAATAGTACATTTGAAGTTT  946

seq1  ATTGGTGACTATAAAAGTGACAATTCTTTACCCTAATGAGTGAGTCAAAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGACTATAAAAGTGACAATTCTTTACCCTAATGAGTGAGTCAAAT  996

seq1  TTTCTATATATTAATATGGAATTC  1010
      ||||||||||||||||||||||||
seq2  TTTCTATATATTAATATGGAATTC  1020


seq1: chr3_47509582_47510111
seq2: B6Ng01-189J10.g_65_594

seq1  GAATTCAGAGCTGCCATAAATTAAACCTGATGTGATAGCCAGAAGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTGCCATAAATTAAACCTGATGTGATAGCCAGAAGCTGGA  50

seq1  AAGAACCCAGATACCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCAGATACCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC  100

seq1  ATTTACACGATGGAGTACTACTTAGCTATTAAAAAGAATGAATTTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACGATGGAGTACTACTTAGCTATTAAAAAGAATGAATTTATGAA  150

seq1  ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAAGTAA  200

seq1  CACAATCACAAAGGAACTCACACAATACGTACTCACTGATAAGTGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCACAAAGGAACTCACACAATACGTACTCACTGATAAGTGGATAT  250

seq1  TAGCCCAAAACTTAGGATACCCAAGATATAAGGTACAATTTGGCAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAAAACTTAGGATACCCAAGATATAAGGTACAATTTGGCAAATGC  300

seq1  ATGAAACTCTAGAAGAATGAAGACCAAAGTGTGGACACTGTGCCCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCTAGAAGAATGAAGACCAAAGTGTGGACACTGTGCCCCTTCT  350

seq1  TAGAATTGGGAACAAAACACACATGGAAGGAGTTACAGAGACAAATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGGGAACAAAACACACATGGAAGGAGTTACAGAGACAAATTTTG  400

seq1  GAGCTACGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATC  450

seq1  CACCCCATTATCAGCTTCCAAATGCTGACACCATTGCATACACTAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATTATCAGCTTCCAAATGCTGACACCATTGCATACACTAGTAAG  500

seq1  AATTTGCTGAAAGGACCCAGATATAGCTGT  530
      ||||||||||||||||||||||||||||||
seq2  AATTTGCTGAAAGGACCCAGATATAGCTGT  530


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