BAC Information

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BAC

Clone NameB6Ng01-189L18
Chromosome3 (Build37)
Map Location 80,584,441 - 80,585,545
singlet/doubletsinglet
Overlap geneGria2
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189L18.bB6Ng01-189L18.g
ACCGA013676GA013677
length1,099500
definitionB6Ng01-189L18.b B6Ng01-189L18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagacagcagagttagccaagcacacacacagggaaaagtggagc
cattatcctgatatcaaattgtcactgtcctatagacagacgtcagactt
ttctcagttcaagtcaaggtgaaactgagcattcttccaagctggaagaa
atttgtggagcatttacttaataaactaaacacatggaggcatctatctc
aaaaggtgatgtgatctagttaaagcagcagtcatttaaaaaacagattt
ggactctgtatctaggatatatgactcaaaacatcatgtgtctggcaaag
tgcctggttagaatgtgctgaatgaatgatactaatctcattctttgcta
ccctgtaattttctcaagtataactttatgcttagtacttgtattgtgta
tcatggagaccagtgcagcattgagctagctgtaggtgataaaaatctat
ttagctattaattccttaatataagccattgtctaatggtcttcataatg
agaaactacaattcttgaaagaaagccactatgggagtgttgaattctct
tacctttgtgttttataagtgatatttatggttcccgagtcttacagtca
agcagaaggcatgtgctgaggacattacctcagggaaggtaactgctgat
tgcttacatttcaatgaactgacttcagtgctctctgaatactttgtaac
taccattatgctgccacaccttacatcaaaactggtgattgtgcattaac
tagactgccaagaatcattacatttcataaatcaaataaaatgtttcttt
ttttgtgtggatagatatttaaagccccaagttttaagttcaatgcacaa
gtttaattctcttgacactatcttccctcaggaagggtaatgattaatag
agtataaaaaatagaacacgaaaagcattttttactttctgcagtatttt
gcttagtgacacatatctaaactcaaacatagttattctacttatctaaa
atactctagactagtatagtcataggtggatccacggcttgaggccacag
atgattgctacatcatagtgtgctacatgagcaggcagatccacactga

gaattcttaggcaaatggatggatttggaagatatcatcccaagtgagtt
aacccaatcacaaaagaacacacatgatgtgcactcactgataagtggcc
cagaaactcagaatgcccaagatataatttgcaaacacatgaaaattaag
aaggaagaccaaagtgtggatacttcgttccttcctagaatggtgaacaa
aatacccatggaaagagttacagagacaaacttcagacctgagacagaag
gaaggaccatccagagactgccccatccagggatccatcccataaacaat
gaccaaacccagatactattgcatatgtcaacaagattttgctgacagga
ccctgatataggtatcttttgtgaggctatgccagcgcctggcaaataca
gaagtggatgctcacagtcatctatttgatggaacacaggacccccccaa
tgaaggagctatagaaagtacccaaggagctgaaggggtctgcaacccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80584441_80585545
seq2: B6Ng01-189L18.b_46_1144 (reverse)

seq1  TCAGTGTGAATTCTTGCCCTGCTCCATGTAGCACACTATGATGTAGCAAT  50
      |||||||| | |||   |||||| ||||||||||||||||||||||||||
seq2  TCAGTGTGGA-TCT--GCCTGCT-CATGTAGCACACTATGATGTAGCAAT  46

seq1  CATCCTGT-GCCTCAAGCCGT-GATCCACCCTATGACTATACTAAGTCCT  98
      ||| |||| |||||||||||| |||||| |||||||||||||| ||| ||
seq2  CAT-CTGTGGCCTCAAGCCGTGGATCCA-CCTATGACTATACT-AGT-CT  92

seq1  AGAGTATTTTAGATAAGTAG-ATAACTATGTTTGAGTTTAGATATGTGTC  147
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGTATTTTAGATAAGTAGAATAACTATGTTTGAGTTTAGATATGTGTC  142

seq1  ACTAAGCAAAATACTGCAGAAAGTTAAAAATGCTTTTCGTGTTTCTATTT  197
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  ACTAAGCAAAATACTGCAGAAAGTAAAAAATGCTTTTCGTG-TTCTATTT  191

seq1  TTTATACTCTATTAATCATTACCCTTCCTGAGGGAAGATAGTGTCAAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTCTATTAATCATTACCCTTCCTGAGGGAAGATAGTGTCAAGAG  241

seq1  AATTAAACTTGTGCATTGAACTTAAAACTTGGGGCTTTAAATATCTATCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACTTGTGCATTGAACTTAAAACTTGGGGCTTTAAATATCTATCC  291

seq1  ACACAAAAAAAGAAACATTTTATTTGATTTATGAAATGTAATGATTCTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAAAAGAAACATTTTATTTGATTTATGAAATGTAATGATTCTTG  341

seq1  GCAGTCTAGTTAATGCACAATCACCAGTTTTGATGTAAGGTGTGGCAGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTAGTTAATGCACAATCACCAGTTTTGATGTAAGGTGTGGCAGCA  391

seq1  TAATGGTAGTTACAAAGTATTCAGAGAGCACTGAAGTCAGTTCATTGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAGTTACAAAGTATTCAGAGAGCACTGAAGTCAGTTCATTGAAA  441

seq1  TGTAAGCAATCAGCAGTTACCTTCCCTGAGGTAATGTCCTCAGCACATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAATCAGCAGTTACCTTCCCTGAGGTAATGTCCTCAGCACATGC  491

seq1  CTTCTGCTTGACTGTAAGACTCGGGAACCATAAATATCACTTATAAAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTGACTGTAAGACTCGGGAACCATAAATATCACTTATAAAACA  541

seq1  CAAAGGTAAGAGAATTCAACACTCCCATAGTGGCTTTCTTTCAAGAATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAGAGAATTCAACACTCCCATAGTGGCTTTCTTTCAAGAATTG  591

seq1  TAGTTTCTCATTATGAAGACCATTAGACAATGGCTTATATTAAGGAATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCATTATGAAGACCATTAGACAATGGCTTATATTAAGGAATTA  641

seq1  ATAGCTAAATAGATTTTTATCACCTACAGCTAGCTCAATGCTGCACTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAATAGATTTTTATCACCTACAGCTAGCTCAATGCTGCACTGGT  691

seq1  CTCCATGATACACAATACAAGTACTAAGCATAAAGTTATACTTGAGAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGATACACAATACAAGTACTAAGCATAAAGTTATACTTGAGAAAA  741

seq1  TTACAGGGTAGCAAAGAATGAGATTAGTATCATTCATTCAGCACATTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGTAGCAAAGAATGAGATTAGTATCATTCATTCAGCACATTCTA  791

seq1  ACCAGGCACTTTGCCAGACACATGATGTTTTGAGTCATATATCCTAGATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACTTTGCCAGACACATGATGTTTTGAGTCATATATCCTAGATA  841

seq1  CAGAGTCCAAATCTGTTTTTTAAATGACTGCTGCTTTAACTAGATCACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCAAATCTGTTTTTTAAATGACTGCTGCTTTAACTAGATCACAT  891

seq1  CACCTTTTGAGATAGATGCCTCCATGTGTTTAGTTTATTAAGTAAATGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTGAGATAGATGCCTCCATGTGTTTAGTTTATTAAGTAAATGCT  941

seq1  CCACAAATTTCTTCCAGCTTGGAAGAATGCTCAGTTTCACCTTGACTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATTTCTTCCAGCTTGGAAGAATGCTCAGTTTCACCTTGACTTGA  991

seq1  ACTGAGAAAAGTCTGACGTCTGTCTATAGGACAGTGACAATTTGATATCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAAGTCTGACGTCTGTCTATAGGACAGTGACAATTTGATATCA  1041

seq1  GGATAATGGCTCCACTTTTCCCTGTGTGTGTGCTTGGCTAACTCTGCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGGCTCCACTTTTCCCTGTGTGTGTGCTTGGCTAACTCTGCTGT  1091

seq1  CTGAATTC  1105
      ||||||||
seq2  CTGAATTC  1099


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