BAC Information

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BAC

Clone NameB6Ng01-190B09
Chromosome3 (Build37)
Map Location 82,579,428 - 82,580,371
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190B09.bB6Ng01-190B09.g
ACCGA013931GA013932
length1,234988
definitionB6Ng01-190B09.b B6Ng01-190B09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatttgatttaggataggtaaagctcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttacgttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
catttttcccctgtgcccatatcttcgaggcttttccccactttctcctc
tataagtttcactgtctctggttttatgtggagttccttgatccacttag
atttgaccttagtacaaggagataggaatggatcaattcccattcttcta
catgataaccaccagttgtgccagcaccatttgttgaaaatgctgtcttt
cttccactggatggttttagctcccttgtcgaagatcaagtgaccatagg
tgtgtgggttcatttctgggtcttcagttctattggattggtctacttgt
ctgtcattataccagtatcatgcagtttttatcacaatggctctgtagta
cagctttaggtcaggcatggtgattccaccagaggttcttttatccttga
gaagagtttttgcaatcctaggttttttgttattccagatgaatttgcag
attgctctttctaattcgttgaagaattgagttggaagtttgatggggat
tgcattgaatctgtagattgcttttggcaagatagccatttttactatat
tgatcctgccaatccatgagcatgggagatctttccatcttctgagattg
tctttaatttctttcttcagagacttgaagttcttatcatactgatcttt
cacttccttagttagagtcacgccaagatatttatattatttgtgactat
tgagaagggtgttgtttcctaatttctttctcagcctgtttattctttgt
gtaggagaaaggccattgacttgttgagttaaatttatatccagctacta
cacgaagctgtttatcaggtttaggagttcttctggtggactttttaggt
cacttattatatactattcatatccaatctgcaaagaggtgaattttgga
cttccatcttccgatcggtacccccgtgatctcctttggtgtgtgtcgca
atgtgtcgtctgcggcgatagagaaccatcccag
gaattcaacttccaccatgtcagaggcatgccagagaaccacgactcatt
tcagagtttgctttcaaaattattcacatggagaggtgaggagtgtttgt
taaaattatagatacttaggactcactctaggctagctggatcaggatct
ttaatgtggaagaaagcttctttgccctgcagtctgagagcaattgagag
caacttcttatttcctgcctgcctttaaattctgtctcaaatgctagaat
tttttctaaatgtgccattaagagaaaaatttaaatgtattaaaactact
taaaacctcctacttcttatcctgaacagtttttaaaacttactttctta
gcacttggagttcagaaaatattgtcttgaatgttttaaatttctgccta
accatggaagataagtatattccaaagatgtctatgaagaggagatgagt
tgtgtcctgtggggctggcctttaatccactcagagagtagtaagctact
cccataatgttcatgccaatatgatgccactgtgaatacctgaccttgtc
aggccttttgtctttatagctgcagggttaacagtctggtaggagttttg
attacttctcttccccagaagcctgaccaaaccttccagtacaatgatag
ctgactagtagagaggacggttccaagttaataccatcttgaagcttcct
tttgcagtggatagcattaatgaagactcacaactggtcaaaatgcaaag
aaaaagtgactatagagttcttatccccaaacgggaaatttacattatct
gctttcatgtcaaggctcaggaatgtgatgggaaaagggcagaaagtgct
aggagtcagaagttggagaggcgtgctgaaagacagagccttctggacct
gggggagctcgctgcacttgggaacacacagcagctgtaagtgtgttcac
aaagaccttcagaagacaggctcatatatcctgcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82579428_82580371
seq2: B6Ng01-190B09.g_65_1008

seq1  GAATTCAACTTCCACCATGTCAGAGGCATGCCAGAGAACCACGACTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTCCACCATGTCAGAGGCATGCCAGAGAACCACGACTCATT  50

seq1  TCAGAGTTTGCTTTCAAAATTATTCACATGGAGAGGTGAGGAGTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTTGCTTTCAAAATTATTCACATGGAGAGGTGAGGAGTGTTTGT  100

seq1  TAAAATTATAGATACTTAGGACTCACTCTAGGCTAGCTGGATCAGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATAGATACTTAGGACTCACTCTAGGCTAGCTGGATCAGGATCT  150

seq1  TTAATGTGGAAGAAAGCTTCTTTGCCCTGCAGTCTGAGAGCAATTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGGAAGAAAGCTTCTTTGCCCTGCAGTCTGAGAGCAATTGAGAG  200

seq1  CAACTTCTTATTTCCTGCCTGCCTTTAAATTCTGTCTCAAATGCTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTTATTTCCTGCCTGCCTTTAAATTCTGTCTCAAATGCTAGAAT  250

seq1  TTTTTCTAAATGTGCCATTAAGAGAAAAATTTAAATGTATTAAAACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAATGTGCCATTAAGAGAAAAATTTAAATGTATTAAAACTACT  300

seq1  TAAAACCTCCTACTTCTTATCCTGAACAGTTTTTAAAACTTACTTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTCCTACTTCTTATCCTGAACAGTTTTTAAAACTTACTTTCTTA  350

seq1  GCACTTGGAGTTCAGAAAATATTGTCTTGAATGTTTTAAATTTCTGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGAGTTCAGAAAATATTGTCTTGAATGTTTTAAATTTCTGCCTA  400

seq1  ACCATGGAAGATAAGTATATTCCAAAGATGTCTATGAAGAGGAGATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAAGATAAGTATATTCCAAAGATGTCTATGAAGAGGAGATGAGT  450

seq1  TGTGTCCTGTGGGGCTGGCCTTTAATCCACTCAGAGAGTAGTAAGCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGTGGGGCTGGCCTTTAATCCACTCAGAGAGTAGTAAGCTACT  500

seq1  CCCATAATGTTCATGCCAATATGATGCCACTGTGAATACCTGACCTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAATGTTCATGCCAATATGATGCCACTGTGAATACCTGACCTTGTC  550

seq1  AGGCCTTTTGTCTTTATAGCTGCAGGGTTAACAGTCTGGTAGGAGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTTGTCTTTATAGCTGCAGGGTTAACAGTCTGGTAGGAGTTTTG  600

seq1  ATTACTTCTCTTCCCCAGAAGCCTGACCAAACCTTCCAGTACAATGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCTCTTCCCCAGAAGCCTGACCAAACCTTCCAGTACAATGATAG  650

seq1  CTGACTAGTAGAGAGGACGGTTCCAAGTTAATACCATCTTGAAGCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGTAGAGAGGACGGTTCCAAGTTAATACCATCTTGAAGCTTCCT  700

seq1  TTTGCAGTGGATAGCATTAATGAAGACTCACAACTGGTCAAAATGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTGGATAGCATTAATGAAGACTCACAACTGGTCAAAATGCAAAG  750

seq1  AAAAAGTGACTATAGAGTTCTTATCCCCAAACGGGAAATTTACATTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGACTATAGAGTTCTTATCCCCAAACGGGAAATTTACATTATCT  800

seq1  GCTTTCATGTCAAGGCTCAGGGAATGTGATGGGAAAAGGGCAGAAAGTGC  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTTTCATGTCAAGGCTCA-GGAATGTGATGGGAAAAGGGCAGAAAGTGC  849

seq1  TAGGAGTCAGAAGTTGGAGAGGCGTGCTGAAAGACAGAGCCTTCTGGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCAGAAGTTGGAGAGGCGTGCTGAAAGACAGAGCCTTCTGGACC  899

seq1  T-GGGGAGCTCGCTGCACTTGGGAACACACAGCAGCTGTAAGTGT  944
      | |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGCTCGCTGCACTTGGGAACACACAGCAGCTGTAAGTGT  944